Wall clock time and date at job start Mon Mar 30 2020 02:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46962 * 2 1 4 4 C 1.53002 * 109.46515 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46686 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99727 * 180.02562 * 5 4 3 7 7 C 1.50714 * 109.46775 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99611 * 179.97438 * 7 6 5 10 10 C 1.39934 * 119.99619 * 174.88694 * 9 7 6 11 11 C 1.39301 * 119.94407 * 145.78260 * 10 9 7 12 12 C 1.38479 * 120.42722 * 180.02562 * 11 10 9 13 13 C 1.37680 * 120.32453 * 359.97374 * 12 11 10 14 14 C 1.40744 * 119.88647 * 0.03052 * 13 12 11 15 15 C 1.41403 * 120.21462 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00505 * 205.16949 * 15 14 13 17 17 C 1.39933 * 120.00052 * 25.16661 * 15 14 13 18 18 N 1.30836 * 119.99792 * 16.80949 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 196.80781 * 17 15 14 20 20 H 1.48497 * 109.47277 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47355 * 120.00170 * 19 17 15 22 22 H 1.48505 * 109.47113 * 240.00035 * 19 17 15 23 23 C 1.38238 * 119.95249 * 325.51636 * 10 9 7 24 24 H 1.09001 * 109.47182 * 300.00624 * 1 2 3 25 25 H 1.09002 * 109.46914 * 60.00391 * 1 2 3 26 26 H 1.08994 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47105 * 239.99436 * 2 1 3 28 28 H 1.09001 * 109.46477 * 119.99914 * 2 1 3 29 29 H 1.08993 * 109.46942 * 59.99933 * 3 2 1 30 30 H 1.08992 * 109.46908 * 299.99500 * 3 2 1 31 31 H 1.09001 * 109.47212 * 59.99632 * 4 3 2 32 32 H 1.09002 * 109.47332 * 299.99590 * 4 3 2 33 33 H 1.08994 * 109.46853 * 299.99282 * 6 5 4 34 34 H 1.08999 * 109.47409 * 59.99960 * 6 5 4 35 35 H 0.96995 * 120.00342 * 354.89338 * 9 7 6 36 36 H 1.07996 * 119.78208 * 359.97438 * 11 10 9 37 37 H 1.07998 * 119.83949 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.06071 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99868 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.15793 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.4709 2.9025 0.0013 7 6 5.8595 4.3587 0.0013 8 8 5.0010 5.2153 0.0008 9 7 7.1610 4.7087 0.0019 10 6 7.5231 6.0561 -0.1061 11 6 8.6509 6.5286 0.5612 12 6 9.0181 7.8601 0.4618 13 6 8.2720 8.7320 -0.2990 14 6 7.1300 8.2690 -0.9789 15 6 6.3584 9.1585 -1.7617 16 1 5.3141 8.9514 -1.9434 17 6 6.9478 10.3074 -2.3010 18 7 8.2508 10.4028 -2.3709 19 14 5.8744 11.7046 -2.9213 20 1 4.4444 11.3521 -2.7316 21 1 6.1846 12.9421 -2.1614 22 1 6.1407 11.9303 -4.3647 23 6 6.7644 6.9148 -0.8793 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.8736 2.4186 0.8911 34 1 5.8737 2.4193 -0.8889 35 1 7.8467 4.0268 0.0770 36 1 9.2421 5.8523 1.1607 37 1 9.8945 8.2162 0.9828 38 1 8.5625 9.7695 -0.3739 39 1 8.6594 11.1994 -2.7444 40 1 5.8925 6.5484 -1.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456733215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:26 Heat of formation + Delta-G solvation = -77.520770 kcal Electronic energy + Delta-G solvation = -20377.792903 eV Core-core repulsion = 17156.813008 eV Total energy + Delta-G solvation = -3220.979894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.74294 -38.07189 -36.95185 -35.10841 -34.39937 -33.02080 -30.08109 -29.79974 -28.68600 -26.67302 -25.26031 -23.48736 -21.71382 -21.30545 -20.82271 -19.59576 -17.78361 -16.93604 -16.64265 -16.40817 -15.48874 -15.31884 -15.00775 -14.61727 -14.45295 -14.17559 -13.69978 -13.22551 -13.06784 -12.83747 -12.71229 -12.16306 -12.00455 -11.71464 -11.61748 -11.36204 -11.17171 -11.13601 -11.09198 -10.89057 -10.88313 -10.42885 -10.11350 -9.77754 -9.63525 -9.36520 -9.04806 -8.92360 -7.42946 -6.90468 -6.69124 -4.31032 2.59126 2.84862 3.03009 3.12227 3.19513 3.21452 3.39567 3.99059 4.06196 4.65572 4.66900 4.75894 4.86460 4.94749 5.01062 5.09744 5.18475 5.19763 5.34910 5.53315 5.55994 5.62715 5.74473 5.85593 5.99122 6.06873 6.25919 6.40734 6.76010 6.93542 7.05619 7.08393 7.11386 7.28266 7.59522 7.74639 7.98741 8.12676 8.18629 8.29080 8.65236 8.75616 8.96822 9.01021 10.24071 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.003274 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.589179 B = 8551.054921 C = 9765.898569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.060 3.940 5 O -0.362 6.362 6 C 0.048 3.952 7 C 0.502 3.498 8 O -0.495 6.495 9 N -0.668 5.668 10 C 0.152 3.848 11 C -0.261 4.261 12 C -0.092 4.092 13 C -0.172 4.172 14 C 0.119 3.881 15 C -0.457 4.457 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.796 5.796 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.210 4.210 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 -17.053 3.320 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.158 4.158 4 C -0.017 4.017 5 O -0.280 6.280 6 C -0.032 4.032 7 C 0.287 3.713 8 O -0.368 6.368 9 N -0.314 5.314 10 C 0.061 3.939 11 C -0.283 4.283 12 C -0.111 4.111 13 C -0.191 4.191 14 C 0.116 3.884 15 C -0.486 4.486 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.421 5.421 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.232 4.232 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.883 -16.149 3.208 17.484 hybrid contribution 0.311 -0.023 -0.280 0.419 sum -5.571 -16.172 2.929 17.354 Atomic orbital electron populations 1.21757 0.95401 1.01605 1.02209 1.21439 0.96299 0.96035 1.02074 1.21549 0.93261 0.97122 1.03883 1.22587 0.95466 0.83594 1.00041 1.88035 1.18646 1.25912 1.95379 1.22187 0.83762 0.95078 1.02223 1.20197 0.83006 0.90259 0.77820 1.90781 1.49036 1.51268 1.45674 1.43322 1.06663 1.08098 1.73310 1.17406 0.96751 0.81589 0.98154 1.20029 1.01961 0.96398 1.09900 1.20458 0.98495 0.93033 0.99155 1.21352 0.98438 0.99507 0.99850 1.17500 0.91237 0.90262 0.89368 1.19623 0.97721 1.04044 1.27255 0.90281 1.25912 0.95097 0.99066 0.94134 1.69841 1.10694 1.27577 1.34018 0.86262 0.81444 0.80468 0.78573 1.18315 1.19718 1.20045 1.20992 1.03478 0.93536 1.05172 0.92538 0.92513 0.92695 0.91878 0.91915 0.90897 0.90832 0.93270 0.93336 0.90599 0.90401 0.76823 0.89271 0.89014 0.86280 0.91017 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.12 -1.16 5.58 -26.73 -0.15 -1.31 16 4 C 0.06 0.62 5.94 37.16 0.22 0.84 16 5 O -0.36 -5.41 9.88 -55.14 -0.54 -5.95 16 6 C 0.05 0.62 6.42 36.01 0.23 0.85 16 7 C 0.50 9.34 7.63 -10.98 -0.08 9.25 16 8 O -0.50 -11.92 14.25 -14.35 -0.20 -12.12 16 9 N -0.67 -12.01 5.34 -9.91 -0.05 -12.06 16 10 C 0.15 3.52 6.25 -83.76 -0.52 3.00 16 11 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 12 C -0.09 -2.19 10.01 -39.70 -0.40 -2.58 16 13 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 14 C 0.12 3.35 5.57 -106.85 -0.59 2.76 16 15 C -0.46 -12.80 9.05 -37.74 -0.34 -13.14 16 16 H 0.08 2.20 7.90 -52.49 -0.41 1.78 16 17 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 18 N -0.80 -20.97 10.94 55.55 0.61 -20.36 16 19 Si 0.91 19.40 29.59 -169.99 -5.03 14.37 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 C -0.21 -5.60 8.39 -38.69 -0.32 -5.93 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 5.29 8.82 -40.82 -0.36 4.93 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 40 H 0.11 2.92 6.48 -52.48 -0.34 2.58 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -32.80 339.17 -8.75 -41.55 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.07 Total: 6.70 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.57 Total: -17.24 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.55 Total: -32.42 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.75 Total: -18.07 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.80 -8.75 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456733215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.972 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds