Wall clock time and date at job start Mon Mar 30 2020 02:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46962 * 2 1 4 4 C 1.53002 * 109.46515 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46686 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99727 * 180.02562 * 5 4 3 7 7 C 1.50714 * 109.46775 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99611 * 179.97438 * 7 6 5 10 10 C 1.39934 * 119.99619 * 174.88694 * 9 7 6 11 11 C 1.39301 * 119.94407 * 145.78260 * 10 9 7 12 12 C 1.38479 * 120.42722 * 180.02562 * 11 10 9 13 13 C 1.37680 * 120.32453 * 359.97374 * 12 11 10 14 14 C 1.40744 * 119.88647 * 0.03052 * 13 12 11 15 15 C 1.41403 * 120.21462 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00505 * 205.16949 * 15 14 13 17 17 C 1.39933 * 120.00052 * 25.16661 * 15 14 13 18 18 N 1.30836 * 119.99792 * 16.80949 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 196.80781 * 17 15 14 20 20 H 1.48497 * 109.47277 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47355 * 120.00170 * 19 17 15 22 22 H 1.48505 * 109.47113 * 240.00035 * 19 17 15 23 23 C 1.38238 * 119.95249 * 325.51636 * 10 9 7 24 24 H 1.09001 * 109.47182 * 300.00624 * 1 2 3 25 25 H 1.09002 * 109.46914 * 60.00391 * 1 2 3 26 26 H 1.08994 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47105 * 239.99436 * 2 1 3 28 28 H 1.09001 * 109.46477 * 119.99914 * 2 1 3 29 29 H 1.08993 * 109.46942 * 59.99933 * 3 2 1 30 30 H 1.08992 * 109.46908 * 299.99500 * 3 2 1 31 31 H 1.09001 * 109.47212 * 59.99632 * 4 3 2 32 32 H 1.09002 * 109.47332 * 299.99590 * 4 3 2 33 33 H 1.08994 * 109.46853 * 299.99282 * 6 5 4 34 34 H 1.08999 * 109.47409 * 59.99960 * 6 5 4 35 35 H 0.96995 * 120.00342 * 354.89338 * 9 7 6 36 36 H 1.07996 * 119.78208 * 359.97438 * 11 10 9 37 37 H 1.07998 * 119.83949 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.06071 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99868 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.15793 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0464 2.7897 0.0012 6 6 5.4709 2.9025 0.0013 7 6 5.8595 4.3587 0.0013 8 8 5.0010 5.2153 0.0008 9 7 7.1610 4.7087 0.0019 10 6 7.5231 6.0561 -0.1061 11 6 8.6509 6.5286 0.5612 12 6 9.0181 7.8601 0.4618 13 6 8.2720 8.7320 -0.2990 14 6 7.1300 8.2690 -0.9789 15 6 6.3584 9.1585 -1.7617 16 1 5.3141 8.9514 -1.9434 17 6 6.9478 10.3074 -2.3010 18 7 8.2508 10.4028 -2.3709 19 14 5.8744 11.7046 -2.9213 20 1 4.4444 11.3521 -2.7316 21 1 6.1846 12.9421 -2.1614 22 1 6.1407 11.9303 -4.3647 23 6 6.7644 6.9148 -0.8793 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.8736 2.4186 0.8911 34 1 5.8737 2.4193 -0.8889 35 1 7.8467 4.0268 0.0770 36 1 9.2421 5.8523 1.1607 37 1 9.8945 8.2162 0.9828 38 1 8.5625 9.7695 -0.3739 39 1 8.6594 11.1994 -2.7444 40 1 5.8925 6.5484 -1.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456733215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:25 Heat of formation + Delta-G solvation = -97.895491 kcal Electronic energy + Delta-G solvation = -20378.676417 eV Core-core repulsion = 17156.813008 eV Total energy + Delta-G solvation = -3221.863409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27739 -39.35224 -38.53370 -36.23023 -35.79631 -34.86031 -31.76964 -31.17936 -29.98165 -27.99154 -27.23821 -24.21636 -23.35300 -22.72866 -22.04527 -21.21885 -19.59538 -18.26509 -17.78382 -17.56077 -17.17293 -16.64206 -16.49034 -16.28790 -15.73243 -15.39795 -14.89530 -14.76920 -14.48167 -14.04388 -13.90859 -13.67700 -13.52654 -13.03795 -12.93979 -12.85225 -12.77550 -12.41985 -12.19163 -11.99017 -11.96503 -11.85813 -11.53996 -11.52756 -11.17300 -10.89657 -10.66334 -10.64041 -9.41429 -8.77900 -8.62653 -6.38889 0.83390 0.97722 1.35050 1.45330 1.50718 1.74328 1.85772 2.20489 2.71300 2.99431 3.66356 3.77007 3.99068 4.07770 4.19226 4.23273 4.27575 4.43221 4.45924 4.47582 4.62464 4.69022 4.91085 4.95028 5.02519 5.03031 5.07942 5.10617 5.21075 5.23674 5.31379 5.34866 5.44554 5.73384 5.83827 6.05865 6.08528 6.15217 6.32834 6.63853 6.67910 6.91891 6.99224 7.31416 8.31721 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.003274 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.589179 B = 8551.054921 C = 9765.898569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.123 4.123 4 C 0.056 3.944 5 O -0.405 6.405 6 C 0.058 3.942 7 C 0.495 3.505 8 O -0.561 6.561 9 N -0.653 5.653 10 C 0.158 3.842 11 C -0.248 4.248 12 C -0.091 4.091 13 C -0.198 4.198 14 C 0.087 3.913 15 C -0.503 4.503 16 H 0.060 0.940 17 C 0.038 3.962 18 N -0.821 5.821 19 Si 0.982 3.018 20 H -0.267 1.267 21 H -0.257 1.257 22 H -0.260 1.260 23 C -0.240 4.240 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.425 0.575 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.290 0.710 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -19.278 4.133 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.160 4.160 4 C -0.020 4.020 5 O -0.325 6.325 6 C -0.021 4.021 7 C 0.283 3.717 8 O -0.438 6.438 9 N -0.301 5.301 10 C 0.065 3.935 11 C -0.269 4.269 12 C -0.110 4.110 13 C -0.218 4.218 14 C 0.085 3.915 15 C -0.533 4.533 16 H 0.078 0.922 17 C -0.177 4.177 18 N -0.447 5.447 19 Si 0.802 3.198 20 H -0.192 1.192 21 H -0.181 1.181 22 H -0.185 1.185 23 C -0.262 4.262 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.264 0.736 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.543 -18.445 4.031 19.419 hybrid contribution -0.052 0.514 -0.459 0.691 sum -4.595 -17.931 3.571 18.852 Atomic orbital electron populations 1.21784 0.95377 1.02316 1.01747 1.21409 0.96305 0.94312 1.03149 1.21588 0.93535 0.98561 1.02356 1.22824 0.95330 0.81808 1.02017 1.87994 1.19755 1.28899 1.95831 1.22252 0.83478 0.90509 1.05832 1.21402 0.82190 0.92522 0.75601 1.90765 1.50783 1.53750 1.48453 1.43198 1.07716 1.06700 1.72535 1.17504 0.96023 0.83581 0.96406 1.20502 1.01262 0.96515 1.08622 1.20865 0.98776 0.93372 0.97950 1.21322 0.99163 0.99627 1.01678 1.17847 0.92343 0.91122 0.90221 1.19744 0.97219 1.06503 1.29790 0.92223 1.26697 0.96511 1.00760 0.93740 1.69858 1.11938 1.28649 1.34229 0.85178 0.78773 0.77109 0.78727 1.19151 1.18146 1.18468 1.20948 1.03866 0.94120 1.07289 0.92956 0.93124 0.91357 0.90865 0.90655 0.92317 0.92597 0.91377 0.91004 0.86256 0.86907 0.73602 0.84567 0.85638 0.87685 0.89935 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.11 -1.44 5.93 30.60 0.18 -1.26 16 3 C -0.12 -2.28 5.58 30.60 0.17 -2.11 16 4 C 0.06 1.02 5.94 71.98 0.43 1.44 16 5 O -0.41 -11.60 9.88 -129.94 -1.28 -12.88 16 6 C 0.06 1.34 6.42 71.24 0.46 1.80 16 7 C 0.49 18.00 7.63 87.66 0.67 18.67 16 8 O -0.56 -28.06 14.25 16.01 0.23 -27.83 16 9 N -0.65 -22.20 5.34 -303.64 -1.62 -23.82 16 10 C 0.16 7.21 6.25 38.10 0.24 7.44 16 11 C -0.25 -10.39 9.97 22.58 0.23 -10.17 16 12 C -0.09 -4.18 10.01 22.20 0.22 -3.96 16 13 C -0.20 -10.85 8.69 22.75 0.20 -10.65 16 14 C 0.09 5.18 5.57 -21.31 -0.12 5.06 16 15 C -0.50 -30.07 9.05 23.46 0.21 -29.85 16 16 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 17 C 0.04 2.03 5.16 85.25 0.44 2.47 16 18 N -0.82 -44.42 10.94 21.82 0.24 -44.18 16 19 Si 0.98 41.00 29.59 68.60 2.03 43.03 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 C -0.24 -13.43 8.39 22.85 0.19 -13.24 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.43 9.61 8.82 -92.71 -0.82 8.79 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.11 5.94 6.16 -2.91 -0.02 5.92 16 39 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 40 H 0.08 4.75 6.48 -2.91 -0.02 4.73 16 Total: -1.00 -77.96 339.17 4.04 -73.92 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.21 Total: 27.35 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 4.23 Total: -35.59 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -1.38 Total: -68.00 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.06 Total: -40.71 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -77.96 4.04 -73.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456733215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.974 kcal (2) G-P(sol) polarization free energy of solvation -77.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds