Wall clock time and date at job start Mon Mar 30 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00290 * 2 1 4 4 H 1.08995 * 109.47530 * 11.94352 * 3 2 1 5 5 C 1.50694 * 109.47311 * 131.94887 * 3 2 1 6 6 O 1.21286 * 120.00238 * 5.83593 * 5 3 2 7 7 N 1.34778 * 120.00162 * 185.83871 * 5 3 2 8 8 C 1.39938 * 120.00018 * 184.77002 * 7 5 3 9 9 C 1.39290 * 119.94946 * 33.39648 * 8 7 5 10 10 C 1.38490 * 120.42704 * 179.76707 * 9 8 7 11 11 C 1.37687 * 120.32478 * 0.51285 * 10 9 8 12 12 C 1.40746 * 119.88143 * 359.74169 * 11 10 9 13 13 C 1.41400 * 120.20711 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00327 * 29.49982 * 13 12 11 15 15 C 1.39934 * 119.99936 * 209.50126 * 13 12 11 16 16 N 1.30829 * 119.99755 * 9.97247 * 15 13 12 17 17 Si 1.86797 * 120.00286 * 189.97022 * 15 13 12 18 18 H 1.48506 * 109.46938 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47350 * 119.99589 * 17 15 13 20 20 H 1.48502 * 109.47546 * 240.00231 * 17 15 13 21 21 C 1.38244 * 119.94648 * 213.67457 * 8 7 5 22 22 C 1.53006 * 109.46936 * 251.94525 * 3 2 1 23 23 C 1.52997 * 109.47499 * 305.71656 * 22 3 2 24 24 C 1.53001 * 109.47018 * 65.72006 * 22 3 2 25 25 H 1.08997 * 109.46908 * 54.95740 * 1 2 3 26 26 H 1.09004 * 109.46841 * 294.95753 * 1 2 3 27 27 H 1.08994 * 109.47547 * 174.95645 * 1 2 3 28 28 H 0.97000 * 120.00048 * 4.76510 * 7 5 3 29 29 H 1.08003 * 119.78636 * 0.02562 * 9 8 7 30 30 H 1.08000 * 119.83864 * 180.23480 * 10 9 8 31 31 H 1.07995 * 120.06038 * 179.77141 * 11 10 9 32 32 H 0.97006 * 120.00161 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.15993 * 359.95222 * 21 8 7 34 34 H 1.09008 * 109.46859 * 185.71328 * 22 3 2 35 35 H 1.09001 * 109.47269 * 64.19509 * 23 22 3 36 36 H 1.08994 * 109.47093 * 184.20126 * 23 22 3 37 37 H 1.09002 * 109.47071 * 304.20223 * 23 22 3 38 38 H 1.08995 * 109.47498 * 55.09559 * 24 22 3 39 39 H 1.08993 * 109.47287 * 175.10209 * 24 22 3 40 40 H 1.09003 * 109.46768 * 295.09970 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2397 2.0463 0.2127 5 6 3.0822 1.3779 1.0567 6 8 3.3982 0.3802 1.6696 7 7 3.6899 2.5516 1.3207 8 6 4.7529 2.6003 2.2295 9 6 5.6271 1.5211 2.3355 10 6 6.6852 1.5607 3.2281 11 6 6.8785 2.6641 4.0286 12 6 6.0001 3.7599 3.9363 13 6 6.1925 4.8968 4.7547 14 1 7.1865 5.1664 5.0796 15 6 5.0948 5.6726 5.1438 16 7 3.8790 5.2450 4.9190 17 14 5.3654 7.3188 5.9843 18 1 6.8225 7.5713 6.1206 19 1 4.7507 8.3975 5.1696 20 1 4.7384 7.2965 7.3303 21 6 4.9304 3.7171 3.0247 22 6 2.6261 1.5894 -1.3715 23 6 3.6052 0.4705 -1.7327 24 6 1.5178 1.6568 -2.4242 25 1 -0.3633 0.5901 -0.8414 26 1 -0.3633 0.4336 0.9317 27 1 -0.3634 -1.0236 -0.0903 28 1 3.3904 3.3626 0.8808 29 1 5.4812 0.6495 1.7146 30 1 7.3595 0.7201 3.2998 31 1 7.7029 2.6889 4.7258 32 1 3.1180 5.7829 5.1884 33 1 4.2509 4.5529 2.9459 34 1 3.1569 2.5410 -1.3414 35 1 3.0616 -0.4687 -1.8359 36 1 4.0991 0.7098 -2.6743 37 1 4.3522 0.3731 -0.9449 38 1 0.7741 2.3941 -2.1221 39 1 1.9457 1.9446 -3.3844 40 1 1.0440 0.6794 -2.5159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456744710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:34 Heat of formation + Delta-G solvation = -71.158860 kcal Electronic energy + Delta-G solvation = -21672.248883 eV Core-core repulsion = 18451.544861 eV Total energy + Delta-G solvation = -3220.704021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11453 -38.16124 -36.82256 -34.78376 -34.11199 -33.19248 -29.58800 -29.12052 -27.74312 -27.08811 -25.70659 -25.19782 -21.72952 -21.14658 -20.49842 -19.41766 -17.46431 -17.27115 -16.64659 -15.89223 -15.49077 -14.90229 -14.75651 -14.44511 -14.28929 -13.96922 -13.59111 -13.23175 -12.90367 -12.74265 -12.42888 -12.29847 -12.17381 -11.72538 -11.64757 -11.33661 -11.21342 -11.10967 -11.02367 -10.81446 -10.71635 -10.43437 -10.01943 -9.89283 -9.81447 -9.40658 -9.07446 -8.77223 -7.31493 -6.93384 -6.66144 -4.37883 2.57197 2.85795 3.08171 3.13752 3.19351 3.26279 3.37438 3.95837 4.08339 4.62963 4.67456 4.75308 4.90274 5.08028 5.15323 5.29704 5.36475 5.51831 5.58632 5.61685 5.68209 5.74184 5.85904 5.97619 6.16789 6.28094 6.38158 6.65960 6.70231 6.86537 7.01344 7.08438 7.10623 7.28561 7.62995 7.71967 7.93598 8.04956 8.18119 8.33964 8.59002 8.79429 8.91453 8.97181 10.26391 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.004433 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.987460 B = 6315.440635 C = 6846.255807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.077 3.923 4 H 0.085 0.915 5 C 0.501 3.499 6 O -0.504 6.504 7 N -0.663 5.663 8 C 0.144 3.856 9 C -0.221 4.221 10 C -0.090 4.090 11 C -0.223 4.223 12 C 0.119 3.881 13 C -0.465 4.465 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.807 5.807 17 Si 0.910 3.090 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.275 1.275 21 C -0.176 4.176 22 C -0.105 4.105 23 C -0.142 4.142 24 C -0.146 4.146 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.399 0.601 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.277 0.723 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 -2.250 -12.149 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.269 6.269 3 C 0.015 3.985 4 H 0.103 0.897 5 C 0.286 3.714 6 O -0.378 6.378 7 N -0.308 5.308 8 C 0.052 3.948 9 C -0.242 4.242 10 C -0.109 4.109 11 C -0.242 4.242 12 C 0.116 3.884 13 C -0.496 4.496 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.434 5.434 17 Si 0.734 3.266 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.201 1.201 21 C -0.197 4.197 22 C -0.124 4.124 23 C -0.199 4.199 24 C -0.204 4.204 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.233 0.767 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.077 -3.121 -11.694 14.020 hybrid contribution -0.484 1.405 0.339 1.524 sum -7.561 -1.716 -11.355 13.750 Atomic orbital electron populations 1.22943 0.81198 1.02911 1.00027 1.88021 1.19179 1.25055 1.94633 1.22075 0.95267 0.87036 0.94095 0.89723 1.20547 0.83117 0.83874 0.83861 1.90717 1.62935 1.34921 1.49207 1.43417 1.33753 1.09746 1.43903 1.17623 0.87706 0.97035 0.92439 1.20360 0.98268 0.99273 1.06328 1.20440 0.96800 0.97035 0.96580 1.21099 1.04124 0.94918 1.04108 1.17377 0.90016 0.91476 0.89504 1.19549 0.94434 1.08105 1.27500 0.90422 1.25860 0.94653 0.98885 0.94813 1.69810 0.98988 1.36309 1.38280 0.86242 0.79714 0.81492 0.79107 1.18510 1.19923 1.20085 1.21112 1.03335 0.98148 0.97135 1.21496 0.97359 1.00401 0.93127 1.21711 0.98698 0.98328 1.01175 1.21865 0.98004 1.02007 0.98482 0.93831 0.93934 0.89426 0.76717 0.87942 0.88985 0.88808 0.91231 0.85821 0.89803 0.91729 0.92793 0.92281 0.92768 0.92130 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.42 101.05 1.05 1.32 16 2 O -0.35 -5.15 8.75 -55.07 -0.48 -5.63 16 3 C 0.08 1.07 2.33 -27.88 -0.07 1.01 16 4 H 0.08 0.98 7.64 -51.93 -0.40 0.58 16 5 C 0.50 9.45 5.86 -10.99 -0.06 9.38 16 6 O -0.50 -11.79 14.17 -14.29 -0.20 -11.99 16 7 N -0.66 -12.62 5.23 -9.91 -0.05 -12.67 16 8 C 0.14 3.39 6.27 -83.76 -0.53 2.87 16 9 C -0.22 -5.36 8.66 -39.10 -0.34 -5.70 16 10 C -0.09 -2.13 10.02 -39.69 -0.40 -2.53 16 11 C -0.22 -5.59 9.79 -38.84 -0.38 -5.97 16 12 C 0.12 3.19 5.54 -106.85 -0.59 2.59 16 13 C -0.47 -12.32 9.06 -37.74 -0.34 -12.66 16 14 H 0.08 1.98 7.86 -52.49 -0.41 1.57 16 15 C 0.07 1.84 5.26 -17.34 -0.09 1.75 16 16 N -0.81 -20.87 10.85 55.55 0.60 -20.27 16 17 Si 0.91 18.66 29.57 -169.99 -5.03 13.64 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 C -0.18 -4.49 8.56 -38.68 -0.33 -4.82 16 22 C -0.10 -1.20 2.73 -90.62 -0.25 -1.45 16 23 C -0.14 -1.80 8.80 37.16 0.33 -1.48 16 24 C -0.15 -1.29 8.27 37.16 0.31 -0.98 16 25 H 0.04 0.36 6.89 -51.93 -0.36 0.00 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.40 6.17 8.74 -40.82 -0.36 5.82 16 29 H 0.10 2.47 6.39 -52.48 -0.34 2.14 16 30 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 31 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 33 H 0.12 3.19 6.25 -52.49 -0.33 2.86 16 34 H 0.08 0.90 7.98 -51.92 -0.41 0.49 16 35 H 0.06 0.83 7.69 -51.93 -0.40 0.43 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.91 7.28 -51.93 -0.38 0.53 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.54 7.25 -51.93 -0.38 0.17 16 LS Contribution 330.56 15.07 4.98 4.98 Total: -1.00 -31.47 330.56 -7.72 -39.18 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.85 Total: 9.43 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -1.69 Total: -16.66 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.55 Total: -32.94 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.68 Total: -17.62 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.47 -7.72 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456744710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.978 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds