Wall clock time and date at job start Mon Mar 30 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00290 * 2 1 4 4 H 1.08995 * 109.47530 * 11.94352 * 3 2 1 5 5 C 1.50694 * 109.47311 * 131.94887 * 3 2 1 6 6 O 1.21286 * 120.00238 * 5.83593 * 5 3 2 7 7 N 1.34778 * 120.00162 * 185.83871 * 5 3 2 8 8 C 1.39938 * 120.00018 * 184.77002 * 7 5 3 9 9 C 1.39290 * 119.94946 * 33.39648 * 8 7 5 10 10 C 1.38490 * 120.42704 * 179.76707 * 9 8 7 11 11 C 1.37687 * 120.32478 * 0.51285 * 10 9 8 12 12 C 1.40746 * 119.88143 * 359.74169 * 11 10 9 13 13 C 1.41400 * 120.20711 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00327 * 29.49982 * 13 12 11 15 15 C 1.39934 * 119.99936 * 209.50126 * 13 12 11 16 16 N 1.30829 * 119.99755 * 9.97247 * 15 13 12 17 17 Si 1.86797 * 120.00286 * 189.97022 * 15 13 12 18 18 H 1.48506 * 109.46938 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47350 * 119.99589 * 17 15 13 20 20 H 1.48502 * 109.47546 * 240.00231 * 17 15 13 21 21 C 1.38244 * 119.94648 * 213.67457 * 8 7 5 22 22 C 1.53006 * 109.46936 * 251.94525 * 3 2 1 23 23 C 1.52997 * 109.47499 * 305.71656 * 22 3 2 24 24 C 1.53001 * 109.47018 * 65.72006 * 22 3 2 25 25 H 1.08997 * 109.46908 * 54.95740 * 1 2 3 26 26 H 1.09004 * 109.46841 * 294.95753 * 1 2 3 27 27 H 1.08994 * 109.47547 * 174.95645 * 1 2 3 28 28 H 0.97000 * 120.00048 * 4.76510 * 7 5 3 29 29 H 1.08003 * 119.78636 * 0.02562 * 9 8 7 30 30 H 1.08000 * 119.83864 * 180.23480 * 10 9 8 31 31 H 1.07995 * 120.06038 * 179.77141 * 11 10 9 32 32 H 0.97006 * 120.00161 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.15993 * 359.95222 * 21 8 7 34 34 H 1.09008 * 109.46859 * 185.71328 * 22 3 2 35 35 H 1.09001 * 109.47269 * 64.19509 * 23 22 3 36 36 H 1.08994 * 109.47093 * 184.20126 * 23 22 3 37 37 H 1.09002 * 109.47071 * 304.20223 * 23 22 3 38 38 H 1.08995 * 109.47498 * 55.09559 * 24 22 3 39 39 H 1.08993 * 109.47287 * 175.10209 * 24 22 3 40 40 H 1.09003 * 109.46768 * 295.09970 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2397 2.0463 0.2127 5 6 3.0822 1.3779 1.0567 6 8 3.3982 0.3802 1.6696 7 7 3.6899 2.5516 1.3207 8 6 4.7529 2.6003 2.2295 9 6 5.6271 1.5211 2.3355 10 6 6.6852 1.5607 3.2281 11 6 6.8785 2.6641 4.0286 12 6 6.0001 3.7599 3.9363 13 6 6.1925 4.8968 4.7547 14 1 7.1865 5.1664 5.0796 15 6 5.0948 5.6726 5.1438 16 7 3.8790 5.2450 4.9190 17 14 5.3654 7.3188 5.9843 18 1 6.8225 7.5713 6.1206 19 1 4.7507 8.3975 5.1696 20 1 4.7384 7.2965 7.3303 21 6 4.9304 3.7171 3.0247 22 6 2.6261 1.5894 -1.3715 23 6 3.6052 0.4705 -1.7327 24 6 1.5178 1.6568 -2.4242 25 1 -0.3633 0.5901 -0.8414 26 1 -0.3633 0.4336 0.9317 27 1 -0.3634 -1.0236 -0.0903 28 1 3.3904 3.3626 0.8808 29 1 5.4812 0.6495 1.7146 30 1 7.3595 0.7201 3.2998 31 1 7.7029 2.6889 4.7258 32 1 3.1180 5.7829 5.1884 33 1 4.2509 4.5529 2.9459 34 1 3.1569 2.5410 -1.3414 35 1 3.0616 -0.4687 -1.8359 36 1 4.0991 0.7098 -2.6743 37 1 4.3522 0.3731 -0.9449 38 1 0.7741 2.3941 -2.1221 39 1 1.9457 1.9446 -3.3844 40 1 1.0440 0.6794 -2.5159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456744710.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:33 Heat of formation + Delta-G solvation = -89.871362 kcal Electronic energy + Delta-G solvation = -21673.060318 eV Core-core repulsion = 18451.544861 eV Total energy + Delta-G solvation = -3221.515456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56300 -39.60633 -38.44090 -36.07888 -35.61229 -34.96690 -31.50031 -30.72421 -28.89647 -28.05811 -27.18535 -26.67612 -23.31494 -22.96762 -21.82744 -20.88660 -19.24977 -18.74099 -17.84938 -17.29651 -16.98496 -16.50787 -16.39239 -15.99556 -15.64490 -15.02070 -14.80642 -14.71735 -14.43484 -14.22781 -14.00500 -13.61160 -13.37319 -12.97871 -12.93520 -12.79443 -12.63811 -12.52362 -12.26058 -12.18454 -12.02532 -11.79964 -11.73151 -11.66728 -11.24989 -11.07897 -10.80245 -10.27287 -9.28844 -8.79694 -8.54879 -6.38546 0.78692 1.02777 1.41279 1.48803 1.55972 1.72799 1.96941 2.24037 2.77624 2.97678 3.58588 3.67389 3.69803 3.87781 4.15575 4.28929 4.44059 4.50409 4.53930 4.67368 4.70538 4.81862 4.83044 4.83695 4.93812 5.00481 5.11028 5.14204 5.15487 5.19630 5.35879 5.37171 5.41253 5.77773 5.82995 5.99710 6.07726 6.09132 6.34540 6.58258 6.72857 6.94981 6.97405 7.27105 8.39406 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.004433 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.987460 B = 6315.440635 C = 6846.255807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.380 6.380 3 C 0.086 3.914 4 H 0.114 0.886 5 C 0.497 3.503 6 O -0.556 6.556 7 N -0.656 5.656 8 C 0.149 3.851 9 C -0.236 4.236 10 C -0.089 4.089 11 C -0.242 4.242 12 C 0.091 3.909 13 C -0.498 4.498 14 H 0.077 0.923 15 C 0.034 3.966 16 N -0.836 5.836 17 Si 0.986 3.014 18 H -0.259 1.259 19 H -0.262 1.262 20 H -0.270 1.270 21 C -0.194 4.194 22 C -0.102 4.102 23 C -0.140 4.140 24 C -0.140 4.140 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.416 0.584 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.286 0.714 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 -0.998 -13.344 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.297 6.297 3 C 0.025 3.975 4 H 0.132 0.868 5 C 0.285 3.715 6 O -0.432 6.432 7 N -0.302 5.302 8 C 0.056 3.944 9 C -0.257 4.257 10 C -0.107 4.107 11 C -0.261 4.261 12 C 0.088 3.912 13 C -0.528 4.528 14 H 0.095 0.905 15 C -0.179 4.179 16 N -0.463 5.463 17 Si 0.807 3.193 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.195 1.195 21 C -0.216 4.216 22 C -0.120 4.120 23 C -0.197 4.197 24 C -0.197 4.197 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.118 0.882 28 H 0.254 0.746 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.478 -1.863 -12.928 15.571 hybrid contribution -0.092 0.909 0.686 1.143 sum -8.569 -0.954 -12.241 14.973 Atomic orbital electron populations 1.23187 0.79038 1.04408 1.01102 1.87997 1.21595 1.25495 1.94663 1.22120 0.94284 0.87844 0.93296 0.86798 1.21632 0.83370 0.82597 0.83922 1.90682 1.64776 1.36519 1.51260 1.43389 1.32696 1.11092 1.43038 1.17682 0.88369 0.96020 0.92342 1.20517 0.98864 0.99474 1.06819 1.20742 0.96895 0.97420 0.95685 1.21271 1.04623 0.95188 1.05062 1.17790 0.90927 0.92312 0.90127 1.19815 0.95125 1.09193 1.28652 0.90465 1.26724 0.93917 1.02248 0.95022 1.69865 0.99911 1.37792 1.38685 0.85099 0.79676 0.76525 0.78006 1.18251 1.18622 1.19525 1.21067 1.03620 0.98771 0.98094 1.21545 0.98054 1.00024 0.92425 1.21691 0.98246 0.98937 1.00842 1.21829 0.97260 1.02686 0.97932 0.90989 0.94195 0.88222 0.74639 0.88192 0.86347 0.87902 0.90342 0.86479 0.88950 0.92216 0.90780 0.95929 0.90963 0.90723 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.42 113.37 1.18 1.52 16 2 O -0.38 -10.63 8.75 -130.01 -1.14 -11.77 16 3 C 0.09 2.25 2.33 29.85 0.07 2.32 16 4 H 0.11 2.30 7.64 -2.39 -0.02 2.28 16 5 C 0.50 18.76 5.86 87.66 0.51 19.27 16 6 O -0.56 -26.64 14.17 15.92 0.23 -26.41 16 7 N -0.66 -25.00 5.23 -303.65 -1.59 -26.59 16 8 C 0.15 7.18 6.27 38.10 0.24 7.42 16 9 C -0.24 -11.67 8.66 22.58 0.20 -11.47 16 10 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 11 C -0.24 -12.40 9.79 22.75 0.22 -12.18 16 12 C 0.09 5.01 5.54 -21.31 -0.12 4.89 16 13 C -0.50 -26.85 9.06 23.46 0.21 -26.64 16 14 H 0.08 4.02 7.86 -2.91 -0.02 3.99 16 15 C 0.03 1.71 5.26 85.25 0.45 2.15 16 16 N -0.84 -43.41 10.85 21.82 0.24 -43.17 16 17 Si 0.99 37.84 29.57 68.60 2.03 39.87 16 18 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 19 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 20 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 21 C -0.19 -10.15 8.56 22.85 0.20 -9.96 16 22 C -0.10 -2.10 2.73 -10.79 -0.03 -2.13 16 23 C -0.14 -3.43 8.80 71.98 0.63 -2.80 16 24 C -0.14 -1.94 8.27 71.98 0.60 -1.34 16 25 H 0.07 0.92 6.89 -2.39 -0.02 0.90 16 26 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.42 12.59 8.74 -92.71 -0.81 11.78 16 29 H 0.10 4.97 6.39 -2.91 -0.02 4.95 16 30 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 31 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.29 13.38 8.30 -92.70 -0.77 12.61 16 33 H 0.12 6.19 6.25 -2.91 -0.02 6.17 16 34 H 0.09 1.76 7.98 -2.38 -0.02 1.74 16 35 H 0.06 1.50 7.69 -2.39 -0.02 1.48 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.02 0.70 7.28 -2.39 -0.02 0.68 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.87 7.25 -2.39 -0.02 0.85 16 Total: -1.00 -70.24 330.56 4.58 -65.66 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.23 Total: 35.42 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 4.58 Total: -33.00 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.35 Total: -69.76 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.91 Total: -38.18 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -70.24 4.58 -65.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456744710.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.213 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds