Wall clock time and date at job start Mon Mar 30 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00181 * 2 1 4 4 H 1.09000 * 109.46471 * 30.00912 * 3 2 1 5 5 C 1.50690 * 109.47418 * 270.00510 * 3 2 1 6 6 O 1.21290 * 120.00353 * 353.28912 * 5 3 2 7 7 N 1.34779 * 120.00051 * 173.29354 * 5 3 2 8 8 C 1.39939 * 120.00180 * 174.99429 * 7 5 3 9 9 C 1.39295 * 119.94679 * 325.93678 * 8 7 5 10 10 C 1.38483 * 120.42829 * 179.76369 * 9 8 7 11 11 C 1.37684 * 120.32123 * 0.50969 * 10 9 8 12 12 C 1.40742 * 119.88481 * 359.74617 * 11 10 9 13 13 C 1.41407 * 120.21121 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00441 * 209.83449 * 13 12 11 15 15 C 1.39933 * 119.99811 * 29.83417 * 13 12 11 16 16 N 1.30825 * 120.00255 * 9.58034 * 15 13 12 17 17 Si 1.86807 * 119.99907 * 189.57993 * 15 13 12 18 18 H 1.48496 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46758 * 119.99901 * 17 15 13 20 20 H 1.48499 * 109.47114 * 240.00004 * 17 15 13 21 21 C 1.38239 * 119.94662 * 146.20829 * 8 7 5 22 22 C 1.53001 * 109.46847 * 150.00058 * 3 2 1 23 23 C 1.53001 * 109.47559 * 296.60693 * 22 3 2 24 24 C 1.53001 * 109.47142 * 56.61403 * 22 3 2 25 25 H 1.09000 * 109.46925 * 299.99041 * 1 2 3 26 26 H 1.08996 * 109.47430 * 59.99496 * 1 2 3 27 27 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 28 28 H 0.97002 * 120.00068 * 354.99157 * 7 5 3 29 29 H 1.08006 * 119.78425 * 0.02562 * 9 8 7 30 30 H 1.08003 * 119.84015 * 180.25745 * 10 9 8 31 31 H 1.08001 * 120.05795 * 179.77032 * 11 10 9 32 32 H 0.96998 * 120.00346 * 180.02562 * 16 15 13 33 33 H 1.07990 * 120.16135 * 359.96061 * 21 8 7 34 34 H 1.09006 * 109.46629 * 176.60824 * 22 3 2 35 35 H 1.09006 * 109.46788 * 64.97708 * 23 22 3 36 36 H 1.08998 * 109.47277 * 184.97608 * 23 22 3 37 37 H 1.08997 * 109.47290 * 304.98147 * 23 22 3 38 38 H 1.08996 * 109.47416 * 59.99046 * 24 22 3 39 39 H 1.09002 * 109.47169 * 179.97438 * 24 22 3 40 40 H 1.09006 * 109.46885 * 299.99264 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9992 0.5140 5 6 2.2145 1.7644 -1.4207 6 8 2.0088 1.0008 -2.3403 7 7 2.6259 3.0235 -1.6696 8 6 2.9163 3.4186 -2.9802 9 6 3.4704 2.5060 -3.8750 10 6 3.7572 2.8849 -5.1757 11 6 3.5073 4.1719 -5.5960 12 6 2.9526 5.1064 -4.7016 13 6 2.6926 6.4300 -5.1260 14 1 2.7377 7.2433 -4.4168 15 6 2.3767 6.6860 -6.4650 16 7 2.1377 5.6927 -7.2822 17 14 2.2964 8.4461 -7.0856 18 1 2.6058 9.3783 -5.9719 19 1 3.2873 8.6322 -8.1760 20 1 0.9329 8.7270 -7.6025 21 6 2.6581 4.7154 -3.3834 22 6 3.3590 1.2631 0.7213 23 6 3.1421 0.8790 2.1863 24 6 4.2635 0.2272 0.0508 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.7206 3.6559 -0.9402 29 1 3.6737 1.4952 -3.5533 30 1 4.1829 2.1684 -5.8627 31 1 3.7361 4.4638 -6.6103 32 1 1.9192 5.8702 -8.2104 33 1 2.2321 5.4247 -2.6894 34 1 3.8299 2.2448 0.6689 35 1 2.7531 -0.1378 2.2416 36 1 4.0904 0.9348 2.7207 37 1 2.4282 1.5663 2.6403 38 1 4.4180 0.5008 -0.9929 39 1 5.2245 0.1973 0.5644 40 1 3.7926 -0.7545 0.1032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456744711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:37 Heat of formation + Delta-G solvation = -72.676612 kcal Electronic energy + Delta-G solvation = -21518.560358 eV Core-core repulsion = 18297.790522 eV Total energy + Delta-G solvation = -3220.769836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20702 -38.08477 -36.76725 -35.02540 -34.28358 -32.99163 -29.81693 -28.98742 -27.44503 -27.16577 -25.87074 -25.20011 -21.83858 -20.97513 -20.59229 -19.47461 -17.72503 -17.20634 -16.64785 -15.79473 -15.44747 -14.94752 -14.82000 -14.50052 -14.29308 -13.97480 -13.62549 -13.25376 -12.90758 -12.80205 -12.41110 -12.23074 -12.13452 -11.73598 -11.65157 -11.20938 -11.17807 -11.15265 -10.94960 -10.91357 -10.80610 -10.51197 -10.33151 -10.04309 -9.55221 -9.32683 -9.12471 -8.77023 -7.43063 -6.91161 -6.65078 -4.37456 2.55177 2.81368 3.09030 3.13727 3.16566 3.34867 3.39007 3.83030 3.96753 4.62818 4.68911 4.71244 4.89982 5.02536 5.18795 5.33655 5.38115 5.53585 5.61756 5.67281 5.67593 5.74989 5.87267 5.95653 6.18067 6.28860 6.37088 6.54603 6.74240 6.90417 6.92999 7.05090 7.08161 7.27750 7.61047 7.67271 7.99114 8.05165 8.14598 8.31792 8.59902 8.71196 8.91619 8.97577 10.27627 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031908 B = 0.003772 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.307021 B = 7421.920286 C = 7464.841120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.078 3.922 4 H 0.082 0.918 5 C 0.483 3.517 6 O -0.506 6.506 7 N -0.666 5.666 8 C 0.149 3.851 9 C -0.220 4.220 10 C -0.098 4.098 11 C -0.160 4.160 12 C 0.121 3.879 13 C -0.467 4.467 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.804 5.804 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.275 1.275 21 C -0.239 4.239 22 C -0.086 4.086 23 C -0.143 4.143 24 C -0.145 4.145 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.398 0.602 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.278 0.722 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -5.290 14.599 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.016 3.984 4 H 0.100 0.900 5 C 0.268 3.732 6 O -0.380 6.380 7 N -0.312 5.312 8 C 0.058 3.942 9 C -0.241 4.241 10 C -0.117 4.117 11 C -0.179 4.179 12 C 0.118 3.882 13 C -0.497 4.497 14 H 0.094 0.906 15 C -0.143 4.143 16 N -0.430 5.430 17 Si 0.735 3.265 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.261 4.261 22 C -0.105 4.105 23 C -0.200 4.200 24 C -0.202 4.202 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.232 0.768 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.046 -6.120 13.727 15.030 hybrid contribution -0.437 1.360 -0.102 1.432 sum -0.391 -4.760 13.625 14.438 Atomic orbital electron populations 1.22851 0.80919 1.03016 1.00012 1.87958 1.19713 1.24883 1.94402 1.22145 0.96868 0.86746 0.92617 0.90044 1.21270 0.77703 0.82313 0.91884 1.90731 1.48215 1.53338 1.45688 1.43543 1.66424 1.12425 1.08828 1.17444 0.99432 0.94361 0.82975 1.20341 1.10413 0.98696 0.94661 1.20618 1.00378 0.96212 0.94542 1.21424 1.02759 0.92869 1.00877 1.17393 0.87655 0.93373 0.89763 1.19523 1.42722 0.93497 0.93996 0.90568 1.25862 0.92735 0.99008 0.96654 1.69804 1.34593 1.32747 1.05873 0.86230 0.78456 0.82439 0.79341 1.18567 1.19832 1.20076 1.20770 1.12440 0.94193 0.98672 1.21209 0.92881 1.00984 0.95429 1.21791 1.01636 1.02273 0.94313 1.21757 0.98425 0.99439 1.00619 0.94169 0.93564 0.89377 0.76804 0.88116 0.89004 0.86151 0.91070 0.88686 0.89624 0.91747 0.92282 0.92822 0.92354 0.92630 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.81 101.05 1.09 1.42 16 2 O -0.35 -4.93 8.64 -55.05 -0.48 -5.40 16 3 C 0.08 1.02 2.22 -27.89 -0.06 0.96 16 4 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 5 C 0.48 8.56 5.75 -10.99 -0.06 8.50 16 6 O -0.51 -11.28 14.23 -14.27 -0.20 -11.48 16 7 N -0.67 -11.85 5.30 -9.91 -0.05 -11.90 16 8 C 0.15 3.39 6.25 -83.76 -0.52 2.87 16 9 C -0.22 -5.32 8.66 -39.10 -0.34 -5.65 16 10 C -0.10 -2.43 10.02 -39.69 -0.40 -2.83 16 11 C -0.16 -4.23 8.65 -38.84 -0.34 -4.57 16 12 C 0.12 3.23 5.54 -106.85 -0.59 2.64 16 13 C -0.47 -12.36 9.06 -37.74 -0.34 -12.70 16 14 H 0.08 1.92 7.86 -52.48 -0.41 1.51 16 15 C 0.07 1.86 5.27 -17.35 -0.09 1.77 16 16 N -0.80 -21.18 10.85 55.55 0.60 -20.58 16 17 Si 0.91 18.80 29.57 -169.99 -5.03 13.77 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 21 C -0.24 -5.78 9.70 -38.69 -0.38 -6.16 16 22 C -0.09 -0.94 2.75 -90.62 -0.25 -1.19 16 23 C -0.14 -1.23 9.02 37.16 0.34 -0.90 16 24 C -0.15 -1.80 8.81 37.16 0.33 -1.48 16 25 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.40 5.52 8.82 -40.82 -0.36 5.16 16 29 H 0.10 2.42 6.44 -52.48 -0.34 2.08 16 30 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 31 H 0.12 3.28 6.25 -52.49 -0.33 2.95 16 32 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 35 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.88 7.33 -51.93 -0.38 0.50 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.87 7.60 -51.93 -0.39 0.47 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -31.33 333.75 -7.71 -39.04 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.96 Total: 8.84 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.62 Total: -17.32 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.55 Total: -32.48 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.68 Total: -16.88 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.33 -7.71 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456744711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.639 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds