Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00181 * 2 1 4 4 H 1.09000 * 109.46471 * 30.00912 * 3 2 1 5 5 C 1.50690 * 109.47418 * 270.00510 * 3 2 1 6 6 O 1.21290 * 120.00353 * 353.28912 * 5 3 2 7 7 N 1.34779 * 120.00051 * 173.29354 * 5 3 2 8 8 C 1.39939 * 120.00180 * 174.99429 * 7 5 3 9 9 C 1.39295 * 119.94679 * 325.93678 * 8 7 5 10 10 C 1.38483 * 120.42829 * 179.76369 * 9 8 7 11 11 C 1.37684 * 120.32123 * 0.50969 * 10 9 8 12 12 C 1.40742 * 119.88481 * 359.74617 * 11 10 9 13 13 C 1.41407 * 120.21121 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00441 * 209.83449 * 13 12 11 15 15 C 1.39933 * 119.99811 * 29.83417 * 13 12 11 16 16 N 1.30825 * 120.00255 * 9.58034 * 15 13 12 17 17 Si 1.86807 * 119.99907 * 189.57993 * 15 13 12 18 18 H 1.48496 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46758 * 119.99901 * 17 15 13 20 20 H 1.48499 * 109.47114 * 240.00004 * 17 15 13 21 21 C 1.38239 * 119.94662 * 146.20829 * 8 7 5 22 22 C 1.53001 * 109.46847 * 150.00058 * 3 2 1 23 23 C 1.53001 * 109.47559 * 296.60693 * 22 3 2 24 24 C 1.53001 * 109.47142 * 56.61403 * 22 3 2 25 25 H 1.09000 * 109.46925 * 299.99041 * 1 2 3 26 26 H 1.08996 * 109.47430 * 59.99496 * 1 2 3 27 27 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 28 28 H 0.97002 * 120.00068 * 354.99157 * 7 5 3 29 29 H 1.08006 * 119.78425 * 0.02562 * 9 8 7 30 30 H 1.08003 * 119.84015 * 180.25745 * 10 9 8 31 31 H 1.08001 * 120.05795 * 179.77032 * 11 10 9 32 32 H 0.96998 * 120.00346 * 180.02562 * 16 15 13 33 33 H 1.07990 * 120.16135 * 359.96061 * 21 8 7 34 34 H 1.09006 * 109.46629 * 176.60824 * 22 3 2 35 35 H 1.09006 * 109.46788 * 64.97708 * 23 22 3 36 36 H 1.08998 * 109.47277 * 184.97608 * 23 22 3 37 37 H 1.08997 * 109.47290 * 304.98147 * 23 22 3 38 38 H 1.08996 * 109.47416 * 59.99046 * 24 22 3 39 39 H 1.09002 * 109.47169 * 179.97438 * 24 22 3 40 40 H 1.09006 * 109.46885 * 299.99264 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9992 0.5140 5 6 2.2145 1.7644 -1.4207 6 8 2.0088 1.0008 -2.3403 7 7 2.6259 3.0235 -1.6696 8 6 2.9163 3.4186 -2.9802 9 6 3.4704 2.5060 -3.8750 10 6 3.7572 2.8849 -5.1757 11 6 3.5073 4.1719 -5.5960 12 6 2.9526 5.1064 -4.7016 13 6 2.6926 6.4300 -5.1260 14 1 2.7377 7.2433 -4.4168 15 6 2.3767 6.6860 -6.4650 16 7 2.1377 5.6927 -7.2822 17 14 2.2964 8.4461 -7.0856 18 1 2.6058 9.3783 -5.9719 19 1 3.2873 8.6322 -8.1760 20 1 0.9329 8.7270 -7.6025 21 6 2.6581 4.7154 -3.3834 22 6 3.3590 1.2631 0.7213 23 6 3.1421 0.8790 2.1863 24 6 4.2635 0.2272 0.0508 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.7206 3.6559 -0.9402 29 1 3.6737 1.4952 -3.5533 30 1 4.1829 2.1684 -5.8627 31 1 3.7361 4.4638 -6.6103 32 1 1.9192 5.8702 -8.2104 33 1 2.2321 5.4247 -2.6894 34 1 3.8299 2.2448 0.6689 35 1 2.7531 -0.1378 2.2416 36 1 4.0904 0.9348 2.7207 37 1 2.4282 1.5663 2.6403 38 1 4.4180 0.5008 -0.9929 39 1 5.2245 0.1973 0.5644 40 1 3.7926 -0.7545 0.1032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456744711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = -91.324244 kcal Electronic energy + Delta-G solvation = -21519.368980 eV Core-core repulsion = 18297.790522 eV Total energy + Delta-G solvation = -3221.578458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60259 -39.56891 -38.31921 -36.23414 -35.77640 -34.77066 -31.77841 -30.56001 -28.61307 -28.03565 -27.22399 -26.88693 -23.39742 -22.82453 -21.91788 -20.84110 -19.46379 -18.59940 -17.80678 -17.32883 -16.97245 -16.58808 -16.35252 -15.93307 -15.65913 -15.01974 -14.83540 -14.78660 -14.47217 -14.15032 -13.98685 -13.56615 -13.36890 -12.94734 -12.94041 -12.87171 -12.79847 -12.58828 -12.28625 -12.11523 -11.92670 -11.77122 -11.69898 -11.46835 -11.40735 -11.17953 -10.86361 -10.23674 -9.40089 -8.77698 -8.54800 -6.38826 0.82533 0.94781 1.40551 1.48468 1.55916 1.74142 2.07591 2.23785 2.77061 2.79491 3.61428 3.68219 3.72234 3.88414 4.15054 4.33233 4.40234 4.47329 4.51825 4.62117 4.67590 4.81703 4.85080 4.95118 4.98962 5.02213 5.04802 5.11548 5.16501 5.18811 5.33769 5.38811 5.48161 5.73596 5.79955 5.98732 6.08461 6.09972 6.29882 6.61939 6.69592 6.93436 6.97680 7.27306 8.39587 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031908 B = 0.003772 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.307021 B = 7421.920286 C = 7464.841120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.370 6.370 3 C 0.085 3.915 4 H 0.118 0.882 5 C 0.481 3.519 6 O -0.557 6.557 7 N -0.656 5.656 8 C 0.161 3.839 9 C -0.233 4.233 10 C -0.102 4.102 11 C -0.186 4.186 12 C 0.094 3.906 13 C -0.496 4.496 14 H 0.082 0.918 15 C 0.030 3.970 16 N -0.838 5.838 17 Si 0.988 3.012 18 H -0.254 1.254 19 H -0.267 1.267 20 H -0.269 1.269 21 C -0.247 4.247 22 C -0.084 4.084 23 C -0.136 4.136 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.022 0.978 27 H 0.101 0.899 28 H 0.420 0.580 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.286 0.714 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.022 0.978 39 H 0.075 0.925 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.247 -4.201 17.089 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C 0.024 3.976 4 H 0.135 0.865 5 C 0.269 3.731 6 O -0.434 6.434 7 N -0.304 5.304 8 C 0.067 3.933 9 C -0.254 4.254 10 C -0.121 4.121 11 C -0.206 4.206 12 C 0.091 3.909 13 C -0.527 4.527 14 H 0.100 0.900 15 C -0.183 4.183 16 N -0.465 5.465 17 Si 0.809 3.191 18 H -0.177 1.177 19 H -0.191 1.191 20 H -0.194 1.194 21 C -0.269 4.269 22 C -0.103 4.103 23 C -0.193 4.193 24 C -0.201 4.201 25 H 0.091 0.909 26 H 0.041 0.959 27 H 0.119 0.881 28 H 0.258 0.742 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.369 -5.035 16.274 17.039 hybrid contribution -0.324 0.899 -0.832 1.267 sum -0.693 -4.136 15.442 16.001 Atomic orbital electron populations 1.23025 0.79744 1.04169 1.00347 1.87957 1.21135 1.25469 1.94139 1.22309 0.98919 0.87170 0.89224 0.86452 1.22344 0.75806 0.81273 0.93690 1.90707 1.50291 1.54545 1.47852 1.43475 1.65992 1.13341 1.07549 1.17463 0.97412 0.93517 0.84873 1.20449 1.11148 0.98925 0.94911 1.20818 1.00008 0.95998 0.95280 1.21343 1.04920 0.93857 1.00501 1.17782 0.88099 0.93971 0.91030 1.19837 1.43919 0.93687 0.95208 0.89980 1.26806 0.91609 1.03600 0.96330 1.69888 1.34911 1.35206 1.06490 0.85068 0.78656 0.76576 0.78815 1.17711 1.19131 1.19407 1.20951 1.12506 0.95161 0.98245 1.21307 0.91164 1.01235 0.96603 1.21746 1.02987 1.02276 0.92297 1.21740 0.99990 0.99458 0.98926 0.90937 0.95928 0.88074 0.74236 0.88362 0.87546 0.87771 0.90391 0.86777 0.88128 0.92443 0.90839 0.90938 0.95837 0.90574 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.81 113.37 1.23 1.71 16 2 O -0.37 -9.70 8.64 -130.03 -1.12 -10.83 16 3 C 0.09 2.02 2.22 29.85 0.07 2.09 16 4 H 0.12 1.98 7.79 -2.39 -0.02 1.96 16 5 C 0.48 16.65 5.75 87.65 0.50 17.15 16 6 O -0.56 -25.22 14.23 15.89 0.23 -25.00 16 7 N -0.66 -22.51 5.30 -303.65 -1.61 -24.12 16 8 C 0.16 7.30 6.25 38.10 0.24 7.54 16 9 C -0.23 -11.52 8.66 22.58 0.20 -11.32 16 10 C -0.10 -5.22 10.02 22.20 0.22 -5.00 16 11 C -0.19 -10.26 8.65 22.75 0.20 -10.07 16 12 C 0.09 5.14 5.54 -21.31 -0.12 5.02 16 13 C -0.50 -26.62 9.06 23.46 0.21 -26.41 16 14 H 0.08 4.15 7.86 -2.91 -0.02 4.13 16 15 C 0.03 1.51 5.27 85.25 0.45 1.96 16 16 N -0.84 -45.13 10.85 21.82 0.24 -44.89 16 17 Si 0.99 38.33 29.57 68.60 2.03 40.36 16 18 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 19 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 21 C -0.25 -11.97 9.70 22.85 0.22 -11.75 16 22 C -0.08 -1.61 2.75 -10.79 -0.03 -1.64 16 23 C -0.14 -1.81 9.02 71.98 0.65 -1.16 16 24 C -0.14 -3.42 8.81 71.98 0.63 -2.78 16 25 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 26 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.42 10.58 8.82 -92.71 -0.82 9.76 16 29 H 0.10 4.87 6.44 -2.91 -0.02 4.86 16 30 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.10 5.97 6.25 -2.91 -0.02 5.95 16 32 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 33 H 0.11 4.96 8.06 -2.92 -0.02 4.94 16 34 H 0.10 1.64 8.13 -2.38 -0.02 1.62 16 35 H 0.06 0.87 7.92 -2.38 -0.02 0.85 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.02 0.70 7.33 -2.39 -0.02 0.68 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.43 7.60 -2.38 -0.02 1.41 16 Total: -1.00 -70.66 333.75 4.64 -66.02 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.22 Total: 33.12 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 4.67 Total: -34.67 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -1.37 Total: -69.01 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.90 Total: -35.82 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -70.66 4.64 -66.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456744711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.309 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds