Wall clock time and date at job start Mon Mar 30 2020 02:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00236 * 2 1 4 4 C 1.52992 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47115 * 60.00134 * 4 3 2 6 6 C 1.53008 * 109.47176 * 300.00345 * 4 3 2 7 7 C 1.50697 * 109.47651 * 180.02562 * 4 3 2 8 8 O 1.21294 * 119.99771 * 359.97438 * 7 4 3 9 9 N 1.34778 * 120.00458 * 180.02562 * 7 4 3 10 10 C 1.39938 * 120.00022 * 174.39778 * 9 7 4 11 11 C 1.39291 * 119.94374 * 145.35358 * 10 9 7 12 12 C 1.38489 * 120.42921 * 179.97438 * 11 10 9 13 13 C 1.37686 * 120.31908 * 0.27655 * 12 11 10 14 14 C 1.40742 * 119.88543 * 359.46262 * 13 12 11 15 15 C 1.41404 * 120.21222 * 180.27378 * 14 13 12 16 16 H 1.07994 * 120.00363 * 214.58550 * 15 14 13 17 17 C 1.39940 * 119.99942 * 34.58002 * 15 14 13 18 18 N 1.30826 * 120.00113 * 5.45576 * 17 15 14 19 19 Si 1.86805 * 119.99817 * 185.45679 * 17 15 14 20 20 H 1.48506 * 109.46984 * 60.00005 * 19 17 15 21 21 H 1.48498 * 109.46676 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47007 * 300.00002 * 19 17 15 23 23 C 1.38240 * 119.94929 * 325.33606 * 10 9 7 24 24 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46776 * 299.99394 * 1 2 3 26 26 H 1.08996 * 109.47139 * 59.99682 * 1 2 3 27 27 H 1.09008 * 109.47077 * 60.00180 * 3 2 1 28 28 H 1.09003 * 109.47569 * 300.00555 * 3 2 1 29 29 H 1.09003 * 109.47447 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47313 * 300.00178 * 5 4 3 31 31 H 1.08997 * 109.47105 * 60.00364 * 5 4 3 32 32 H 1.08995 * 109.47046 * 299.99675 * 6 4 3 33 33 H 1.08999 * 109.47026 * 59.99960 * 6 4 3 34 34 H 1.08998 * 109.46898 * 179.97438 * 6 4 3 35 35 H 0.96995 * 120.00055 * 354.40499 * 9 7 4 36 36 H 1.07997 * 119.78710 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.84115 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.05500 * 179.69413 * 13 12 11 39 39 H 0.97000 * 120.00088 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.16302 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9874 0.4250 1.2483 7 6 4.1484 2.5612 0.0000 8 8 3.4355 3.5425 0.0004 9 7 5.4888 2.7021 -0.0009 10 6 6.0585 3.9749 -0.1187 11 6 7.2420 4.2717 0.5532 12 6 7.8148 5.5278 0.4434 13 6 7.2169 6.4994 -0.3274 14 6 6.0238 6.2122 -1.0165 15 6 5.4069 7.2031 -1.8148 16 1 4.3301 7.2483 -1.8831 17 6 6.1918 8.1253 -2.5160 18 7 7.4947 8.0063 -2.5197 19 14 5.3793 9.5263 -3.4470 20 1 4.6011 10.3644 -2.4997 21 1 6.4224 10.3569 -4.1005 22 1 4.4684 8.9713 -4.4802 23 6 5.4461 4.9354 -0.9019 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 5.0730 0.3391 -1.2505 30 1 3.5430 -0.5702 -1.2503 31 1 3.6644 0.9667 -2.1399 32 1 3.6662 0.9657 2.1385 33 1 3.5441 -0.5708 1.2482 34 1 5.0740 0.3386 1.2476 35 1 6.0586 1.9214 0.0799 36 1 7.7164 3.5173 1.1631 37 1 8.7328 5.7476 0.9682 38 1 7.6646 7.4790 -0.4061 39 1 8.0387 8.6458 -3.0054 40 1 4.5284 4.7062 -1.4231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456761641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:29 Heat of formation + Delta-G solvation = -73.179703 kcal Electronic energy + Delta-G solvation = -21446.695894 eV Core-core repulsion = 18225.904243 eV Total energy + Delta-G solvation = -3220.791652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24744 -38.15542 -37.11653 -34.79704 -34.38803 -32.89257 -29.79702 -28.27047 -27.37670 -27.36795 -25.61938 -25.26663 -23.08439 -21.01519 -20.53246 -18.88246 -17.75470 -16.95390 -15.94838 -15.86230 -15.58153 -15.30479 -14.81008 -14.71413 -14.48619 -13.88315 -13.39690 -13.38475 -12.94129 -12.82746 -12.34867 -12.18815 -12.02565 -11.90474 -11.68519 -11.55213 -11.21444 -11.09951 -11.05561 -10.92244 -10.76189 -10.46206 -10.12082 -9.73915 -9.59874 -9.36155 -9.11809 -8.90833 -7.37265 -6.90887 -6.60324 -4.34528 2.56935 2.86134 3.11671 3.15800 3.19936 3.25749 3.39351 3.98534 4.02695 4.62789 4.71807 4.80536 4.86227 5.15451 5.21654 5.25659 5.50088 5.55148 5.56257 5.62447 5.67802 5.77745 5.79398 5.88122 6.14709 6.19248 6.23022 6.35983 6.75630 7.00274 7.02316 7.03963 7.08407 7.29360 7.55186 7.72466 7.94915 8.11950 8.15652 8.26428 8.64594 8.72624 8.96947 8.99612 10.33972 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.004296 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.587189 B = 6516.794310 C = 7449.325483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.085 3.915 4 C -0.079 4.079 5 C -0.136 4.136 6 C -0.136 4.136 7 C 0.517 3.483 8 O -0.519 6.519 9 N -0.663 5.663 10 C 0.145 3.855 11 C -0.250 4.250 12 C -0.097 4.097 13 C -0.157 4.157 14 C 0.121 3.879 15 C -0.466 4.466 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.811 5.811 19 Si 0.912 3.088 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.200 4.200 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.278 0.722 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -13.641 3.551 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C 0.008 3.992 4 C -0.082 4.082 5 C -0.193 4.193 6 C -0.194 4.194 7 C 0.303 3.697 8 O -0.394 6.394 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.271 4.271 12 C -0.116 4.116 13 C -0.177 4.177 14 C 0.118 3.882 15 C -0.497 4.497 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.438 5.438 19 Si 0.737 3.263 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.222 4.222 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.408 -13.005 3.429 14.898 hybrid contribution -0.125 0.488 -0.456 0.679 sum -6.533 -12.517 2.973 14.429 Atomic orbital electron populations 1.22708 0.81029 1.02413 1.00181 1.87772 1.19556 1.28015 1.95537 1.22231 0.91240 0.83914 1.01787 1.20701 0.95026 0.93607 0.98886 1.21789 1.01319 1.00730 0.95512 1.21797 1.01184 1.00866 0.95518 1.20272 0.82575 0.90362 0.76481 1.90751 1.60734 1.40181 1.47767 1.43391 1.06270 1.08684 1.72317 1.17461 0.94748 0.84118 0.98276 1.20107 0.99986 0.98235 1.08812 1.20503 0.98312 0.93354 0.99444 1.21372 0.98782 0.99019 0.98553 1.17495 0.91157 0.90489 0.89035 1.19486 0.94514 1.10966 1.24694 0.90588 1.25833 0.94680 0.97686 0.95958 1.69765 1.05175 1.33702 1.35194 0.86312 0.79526 0.80580 0.79897 1.18981 1.20437 1.19140 1.21083 1.03225 0.93572 1.04297 0.89761 0.94100 0.94043 0.92371 0.92261 0.92076 0.90681 0.92073 0.92199 0.90639 0.92177 0.76744 0.89168 0.88909 0.86408 0.91096 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.62 9.35 -35.23 -0.33 -4.95 16 3 C 0.09 1.14 4.09 37.15 0.15 1.29 16 4 C -0.08 -1.05 0.71 -155.66 -0.11 -1.16 16 5 C -0.14 -1.58 8.23 37.16 0.31 -1.28 16 6 C -0.14 -1.50 8.22 37.16 0.31 -1.20 16 7 C 0.52 9.25 6.20 -10.99 -0.07 9.19 16 8 O -0.52 -11.56 13.77 5.54 0.08 -11.48 16 9 N -0.66 -11.86 5.11 -9.91 -0.05 -11.91 16 10 C 0.15 3.30 6.25 -83.76 -0.52 2.78 16 11 C -0.25 -5.49 9.97 -39.10 -0.39 -5.88 16 12 C -0.10 -2.26 10.02 -39.69 -0.40 -2.66 16 13 C -0.16 -4.15 8.62 -38.84 -0.33 -4.49 16 14 C 0.12 3.35 5.50 -106.85 -0.59 2.76 16 15 C -0.47 -12.95 9.04 -37.74 -0.34 -13.29 16 16 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 17 C 0.07 1.92 5.31 -17.34 -0.09 1.83 16 18 N -0.81 -21.54 10.98 55.55 0.61 -20.93 16 19 Si 0.91 19.51 29.56 -169.99 -5.03 14.49 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.20 -5.22 8.39 -38.68 -0.32 -5.55 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.81 8.10 -51.92 -0.42 0.39 16 28 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 29 H 0.06 0.64 7.70 -51.93 -0.40 0.24 16 30 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 34 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 35 H 0.40 5.63 7.69 -40.82 -0.31 5.31 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.12 3.19 6.49 -52.49 -0.34 2.85 16 39 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 40 H 0.11 2.83 6.51 -52.49 -0.34 2.49 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -30.80 332.02 -6.94 -37.73 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.93 Total: 8.28 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.29 Total: -16.24 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.56 Total: -32.84 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.25 Total: -16.43 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.80 -6.94 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456761641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.447 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds