Wall clock time and date at job start Mon Mar 30 2020 02:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00236 * 2 1 4 4 C 1.52992 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47115 * 60.00134 * 4 3 2 6 6 C 1.53008 * 109.47176 * 300.00345 * 4 3 2 7 7 C 1.50697 * 109.47651 * 180.02562 * 4 3 2 8 8 O 1.21294 * 119.99771 * 359.97438 * 7 4 3 9 9 N 1.34778 * 120.00458 * 180.02562 * 7 4 3 10 10 C 1.39938 * 120.00022 * 174.39778 * 9 7 4 11 11 C 1.39291 * 119.94374 * 145.35358 * 10 9 7 12 12 C 1.38489 * 120.42921 * 179.97438 * 11 10 9 13 13 C 1.37686 * 120.31908 * 0.27655 * 12 11 10 14 14 C 1.40742 * 119.88543 * 359.46262 * 13 12 11 15 15 C 1.41404 * 120.21222 * 180.27378 * 14 13 12 16 16 H 1.07994 * 120.00363 * 214.58550 * 15 14 13 17 17 C 1.39940 * 119.99942 * 34.58002 * 15 14 13 18 18 N 1.30826 * 120.00113 * 5.45576 * 17 15 14 19 19 Si 1.86805 * 119.99817 * 185.45679 * 17 15 14 20 20 H 1.48506 * 109.46984 * 60.00005 * 19 17 15 21 21 H 1.48498 * 109.46676 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47007 * 300.00002 * 19 17 15 23 23 C 1.38240 * 119.94929 * 325.33606 * 10 9 7 24 24 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46776 * 299.99394 * 1 2 3 26 26 H 1.08996 * 109.47139 * 59.99682 * 1 2 3 27 27 H 1.09008 * 109.47077 * 60.00180 * 3 2 1 28 28 H 1.09003 * 109.47569 * 300.00555 * 3 2 1 29 29 H 1.09003 * 109.47447 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47313 * 300.00178 * 5 4 3 31 31 H 1.08997 * 109.47105 * 60.00364 * 5 4 3 32 32 H 1.08995 * 109.47046 * 299.99675 * 6 4 3 33 33 H 1.08999 * 109.47026 * 59.99960 * 6 4 3 34 34 H 1.08998 * 109.46898 * 179.97438 * 6 4 3 35 35 H 0.96995 * 120.00055 * 354.40499 * 9 7 4 36 36 H 1.07997 * 119.78710 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.84115 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.05500 * 179.69413 * 13 12 11 39 39 H 0.97000 * 120.00088 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.16302 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9874 0.4250 1.2483 7 6 4.1484 2.5612 0.0000 8 8 3.4355 3.5425 0.0004 9 7 5.4888 2.7021 -0.0009 10 6 6.0585 3.9749 -0.1187 11 6 7.2420 4.2717 0.5532 12 6 7.8148 5.5278 0.4434 13 6 7.2169 6.4994 -0.3274 14 6 6.0238 6.2122 -1.0165 15 6 5.4069 7.2031 -1.8148 16 1 4.3301 7.2483 -1.8831 17 6 6.1918 8.1253 -2.5160 18 7 7.4947 8.0063 -2.5197 19 14 5.3793 9.5263 -3.4470 20 1 4.6011 10.3644 -2.4997 21 1 6.4224 10.3569 -4.1005 22 1 4.4684 8.9713 -4.4802 23 6 5.4461 4.9354 -0.9019 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 5.0730 0.3391 -1.2505 30 1 3.5430 -0.5702 -1.2503 31 1 3.6644 0.9667 -2.1399 32 1 3.6662 0.9657 2.1385 33 1 3.5441 -0.5708 1.2482 34 1 5.0740 0.3386 1.2476 35 1 6.0586 1.9214 0.0799 36 1 7.7164 3.5173 1.1631 37 1 8.7328 5.7476 0.9682 38 1 7.6646 7.4790 -0.4061 39 1 8.0387 8.6458 -3.0054 40 1 4.5284 4.7062 -1.4231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456761641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:28 Heat of formation + Delta-G solvation = -92.466595 kcal Electronic energy + Delta-G solvation = -21447.532237 eV Core-core repulsion = 18225.904243 eV Total energy + Delta-G solvation = -3221.627994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69251 -39.50289 -38.63076 -36.24088 -35.89148 -34.68247 -31.74821 -30.00659 -28.31845 -28.27464 -27.24904 -26.54440 -24.55689 -22.86458 -22.23286 -20.32489 -19.53400 -18.16510 -17.51648 -17.09339 -16.90907 -16.71455 -16.49503 -16.07825 -16.01092 -15.21753 -14.95377 -14.65176 -14.26494 -14.21818 -13.94234 -13.57743 -13.32332 -13.10405 -12.96534 -12.88839 -12.83491 -12.79353 -12.39693 -12.20094 -12.09414 -11.95108 -11.75816 -11.49526 -11.19124 -10.89334 -10.67305 -10.58333 -9.33491 -8.76599 -8.53968 -6.41500 0.82461 0.98025 1.35545 1.46615 1.47533 1.74163 2.00551 2.22143 2.77606 2.90616 3.47255 3.66978 3.76470 3.84826 4.12759 4.42417 4.45043 4.46083 4.58999 4.59398 4.60676 4.74685 4.80006 4.85837 4.89349 4.96532 5.01340 5.07116 5.11682 5.18697 5.27392 5.30048 5.32217 5.74640 5.82477 6.04131 6.10314 6.10988 6.33949 6.57963 6.67683 6.93698 6.99209 7.25505 8.40788 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.004296 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.587189 B = 6516.794310 C = 7449.325483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.090 3.910 4 C -0.069 4.069 5 C -0.133 4.133 6 C -0.132 4.132 7 C 0.514 3.486 8 O -0.569 6.569 9 N -0.651 5.651 10 C 0.152 3.848 11 C -0.237 4.237 12 C -0.095 4.095 13 C -0.183 4.183 14 C 0.090 3.910 15 C -0.510 4.510 16 H 0.061 0.939 17 C 0.035 3.965 18 N -0.838 5.838 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.265 1.265 23 C -0.226 4.226 24 H 0.109 0.891 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.421 0.579 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.286 0.714 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 -15.783 4.251 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C 0.012 3.988 4 C -0.073 4.073 5 C -0.190 4.190 6 C -0.189 4.189 7 C 0.302 3.698 8 O -0.447 6.447 9 N -0.297 5.297 10 C 0.059 3.941 11 C -0.258 4.258 12 C -0.114 4.114 13 C -0.203 4.203 14 C 0.087 3.913 15 C -0.541 4.541 16 H 0.079 0.921 17 C -0.177 4.177 18 N -0.465 5.465 19 Si 0.804 3.196 20 H -0.187 1.187 21 H -0.185 1.185 22 H -0.190 1.190 23 C -0.248 4.248 24 H 0.128 0.872 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.259 0.741 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.663 -15.209 4.143 16.750 hybrid contribution -0.378 1.003 -0.588 1.222 sum -6.041 -14.207 3.555 15.842 Atomic orbital electron populations 1.22948 0.79504 1.04173 1.00478 1.87748 1.21175 1.26573 1.95516 1.22060 0.91668 0.84612 1.00432 1.20676 0.94564 0.90791 1.01232 1.21810 1.02505 1.00994 0.93698 1.21819 1.02585 1.00991 0.93512 1.21194 0.82153 0.91773 0.74641 1.90739 1.61800 1.42446 1.49683 1.43280 1.06754 1.07770 1.71873 1.17544 0.94630 0.85294 0.96657 1.20561 0.99017 0.98569 1.07630 1.20885 0.99057 0.93161 0.98248 1.21320 0.99135 0.99451 1.00361 1.17813 0.92311 0.91297 0.89865 1.19663 0.94159 1.13283 1.27021 0.92097 1.26629 0.95194 0.99645 0.96267 1.69815 1.06249 1.34672 1.35772 0.85255 0.78787 0.77184 0.78418 1.18653 1.18540 1.18966 1.21034 1.03127 0.94482 1.06151 0.87239 0.93664 0.93976 0.93486 0.94109 0.90416 0.88778 0.93704 0.92905 0.88949 0.90174 0.74082 0.84628 0.85615 0.88057 0.90301 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.39 -8.58 9.35 -148.98 -1.39 -9.98 16 3 C 0.09 2.38 4.09 71.98 0.29 2.67 16 4 C -0.07 -1.74 0.71 -52.93 -0.04 -1.78 16 5 C -0.13 -2.80 8.23 71.98 0.59 -2.21 16 6 C -0.13 -2.50 8.22 71.98 0.59 -1.90 16 7 C 0.51 18.24 6.20 87.66 0.54 18.78 16 8 O -0.57 -26.29 13.77 -3.07 -0.04 -26.33 16 9 N -0.65 -22.24 5.11 -303.64 -1.55 -23.80 16 10 C 0.15 6.79 6.25 38.10 0.24 7.02 16 11 C -0.24 -9.77 9.97 22.58 0.23 -9.55 16 12 C -0.09 -4.29 10.02 22.20 0.22 -4.07 16 13 C -0.18 -9.88 8.62 22.75 0.20 -9.68 16 14 C 0.09 5.20 5.50 -21.31 -0.12 5.09 16 15 C -0.51 -30.07 9.04 23.46 0.21 -29.86 16 16 H 0.06 3.60 7.85 -2.91 -0.02 3.58 16 17 C 0.04 1.90 5.31 85.25 0.45 2.35 16 18 N -0.84 -45.66 10.98 21.83 0.24 -45.42 16 19 Si 0.98 41.02 29.56 68.60 2.03 43.05 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 C -0.23 -12.28 8.39 22.85 0.19 -12.09 16 24 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 1.33 8.10 -2.38 -0.02 1.31 16 28 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 29 H 0.08 1.37 7.70 -2.39 -0.02 1.36 16 30 H 0.09 1.67 7.68 -2.39 -0.02 1.65 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.49 7.68 -2.39 -0.02 1.48 16 34 H 0.08 1.20 7.45 -2.39 -0.02 1.18 16 35 H 0.42 10.44 7.69 -92.71 -0.71 9.72 16 36 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.10 5.71 6.49 -2.91 -0.02 5.69 16 39 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 40 H 0.08 4.77 6.51 -2.91 -0.02 4.75 16 Total: -1.00 -70.93 332.02 4.46 -66.47 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.32 Total: 29.57 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 4.85 Total: -33.56 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.31 Total: -69.22 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.44 Total: -36.31 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -70.93 4.46 -66.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456761641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.995 kcal (2) G-P(sol) polarization free energy of solvation -70.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds