Wall clock time and date at job start Mon Mar 30 2020 01:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47163 * 2 1 4 4 C 1.50698 * 109.47048 * 239.99859 * 2 1 3 5 5 H 1.08003 * 120.00089 * 240.00045 * 4 2 1 6 6 C 1.37883 * 120.00045 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99957 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47282 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46866 * 120.00083 * 8 6 4 11 11 H 1.48500 * 109.47452 * 240.00108 * 8 6 4 12 12 C 1.52998 * 109.47224 * 119.99915 * 2 1 3 13 13 N 1.46500 * 109.47140 * 300.00093 * 12 2 1 14 14 C 1.34784 * 120.00183 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99622 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00106 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47224 * 179.97438 * 16 14 13 18 18 C 1.38269 * 119.94432 * 89.99865 * 17 16 14 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38140 * 119.94299 * 359.46795 * 22 20 19 24 24 H 1.09009 * 109.47142 * 300.00315 * 1 2 3 25 25 H 1.08997 * 109.47124 * 60.00063 * 1 2 3 26 26 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47141 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47155 * 300.00188 * 3 2 1 29 29 H 1.08999 * 109.47376 * 59.99768 * 3 2 1 30 30 H 0.96993 * 119.99782 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47384 * 179.97438 * 12 2 1 32 32 H 1.09005 * 109.47180 * 59.99423 * 12 2 1 33 33 H 0.97000 * 120.00465 * 359.97438 * 13 12 2 34 34 H 1.08997 * 109.47005 * 59.99785 * 16 14 13 35 35 H 1.08997 * 109.46854 * 300.00051 * 16 14 13 36 36 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 38 38 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 39 39 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 40 40 H 1.08003 * 119.97390 * 180.23377 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1474 -2.2864 -3.6037 10 1 1.1676 -1.5868 -4.8164 11 1 3.1471 -0.1859 -4.8161 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6696 15 8 2.5750 -1.4768 3.7808 16 6 1.3759 0.2200 4.9000 17 6 1.8781 -0.4904 6.1305 18 6 3.0866 -0.1244 6.6938 19 6 3.5495 -0.7744 7.8214 20 6 2.8004 -1.7949 8.3890 21 8 3.2533 -2.4355 9.4986 22 6 1.5906 -2.1637 7.8189 23 6 1.1296 -1.5071 6.6943 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.7088 1.1612 -3.4844 31 1 3.1300 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2493 33 1 0.9943 0.7583 2.3565 34 1 0.2859 0.2200 4.9004 35 1 1.7392 1.2476 4.8995 36 1 3.6693 0.6703 6.2517 37 1 4.4938 -0.4885 8.2608 38 1 2.9683 -2.0317 10.3298 39 1 1.0078 -2.9608 8.2563 40 1 0.1861 -1.7913 6.2523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457998219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:17 Heat of formation + Delta-G solvation = -68.358763 kcal Electronic energy + Delta-G solvation = -20931.971213 eV Core-core repulsion = 17711.388613 eV Total energy + Delta-G solvation = -3220.582600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06811 -39.04408 -37.01577 -36.22193 -33.27114 -32.07821 -31.07371 -30.77414 -27.32315 -25.74388 -25.48870 -24.57358 -22.90372 -21.83627 -20.01283 -18.79381 -18.54416 -16.92463 -16.12234 -16.02610 -15.73877 -15.44024 -14.76870 -14.73096 -14.54010 -13.80200 -13.55410 -13.34525 -13.07734 -12.90274 -12.31201 -12.22295 -12.08263 -11.65687 -11.64190 -11.35022 -11.21192 -10.88203 -10.66947 -10.56962 -10.40142 -10.21501 -9.65100 -9.57970 -9.28120 -9.04595 -8.79736 -8.52360 -8.46181 -8.31317 -6.03576 -4.13455 1.12432 1.29843 3.06060 3.26396 3.35036 3.39357 3.44471 3.90536 4.09233 4.39941 4.66164 4.73870 4.89373 5.21069 5.23387 5.26396 5.31039 5.46518 5.57353 5.77108 5.92734 6.17845 6.24449 6.32309 6.32571 6.49635 6.51859 6.72033 6.77867 6.80437 6.92224 7.00342 7.03320 7.34171 7.49567 7.54103 7.68473 7.99597 8.05284 8.14897 8.37553 8.71790 8.87841 9.52564 10.97892 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.003080 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.730977 B = 9088.727373 C = 9266.753720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.718 5.718 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.106 4.106 17 C -0.065 4.065 18 C -0.089 4.089 19 C -0.144 4.144 20 C 0.096 3.904 21 O -0.501 6.501 22 C -0.144 4.144 23 C -0.090 4.090 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.259 0.741 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.386 0.614 39 H 0.126 0.874 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.413 2.003 19.363 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.010 3.990 13 N -0.369 5.369 14 C 0.289 3.711 15 O -0.422 6.422 16 C -0.146 4.146 17 C -0.065 4.065 18 C -0.108 4.108 19 C -0.162 4.162 20 C 0.052 3.948 21 O -0.310 6.310 22 C -0.162 4.162 23 C -0.108 4.108 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.241 0.759 39 H 0.144 0.856 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.717 1.019 18.855 18.896 hybrid contribution -0.135 0.191 -0.618 0.661 sum -0.852 1.210 18.237 18.297 Atomic orbital electron populations 1.21832 0.97773 0.99169 1.00084 1.18355 0.92785 0.92752 0.90603 1.21833 0.98584 0.98363 1.00087 1.21041 1.31373 1.12081 0.89914 0.92400 1.24882 0.94864 0.94925 0.98870 1.69810 1.36783 1.22785 1.23122 0.86519 0.78657 0.79772 0.82972 1.19744 1.21056 1.21051 1.21703 0.98107 0.95770 0.83455 1.46322 1.52760 1.31840 1.05982 1.20400 0.81103 0.85029 0.84603 1.90704 1.38149 1.26456 1.86877 1.20713 1.02700 1.00219 0.90969 1.19368 0.95084 0.96832 0.95240 1.20887 0.95057 0.99778 0.95042 1.21340 1.00532 0.96303 0.98068 1.18462 0.92919 0.93319 0.90073 1.84846 1.75917 1.55222 1.15044 1.21336 0.95830 1.00950 0.98104 1.20886 0.99994 0.94809 0.95083 0.97478 0.89596 0.95461 0.95459 0.89595 0.97472 0.93064 0.92805 0.92808 0.76736 0.88096 0.88092 0.85674 0.85556 0.75858 0.85555 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.91 8.08 37.15 0.30 -2.61 16 4 C -0.51 -13.23 8.01 -34.44 -0.28 -13.51 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 8 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 13 N -0.72 -12.36 4.96 -60.29 -0.30 -12.65 16 14 C 0.50 8.41 7.82 -10.98 -0.09 8.32 16 15 O -0.54 -11.42 16.03 5.56 0.09 -11.33 16 16 C -0.11 -1.24 5.83 -29.04 -0.17 -1.41 16 17 C -0.06 -0.81 4.37 -104.60 -0.46 -1.27 16 18 C -0.09 -1.08 9.69 -39.61 -0.38 -1.46 16 19 C -0.14 -1.66 9.99 -39.43 -0.39 -2.05 16 20 C 0.10 1.12 6.71 -39.21 -0.26 0.86 16 21 O -0.50 -5.05 13.50 -19.41 -0.26 -5.31 16 22 C -0.14 -1.66 9.99 -39.43 -0.39 -2.05 16 23 C -0.09 -1.08 9.69 -39.61 -0.38 -1.47 16 24 H 0.01 0.12 6.86 -51.92 -0.36 -0.23 16 25 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 30 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.40 6.03 6.16 -40.82 -0.25 5.78 16 34 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.39 1.80 9.06 45.56 0.41 2.21 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -31.32 331.23 -7.32 -38.64 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.94 Total: 6.58 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.40 Total: -13.65 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.22 Total: -35.63 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.17 Total: -16.64 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.32 -7.32 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.717 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds