Wall clock time and date at job start Mon Mar 30 2020 01:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47163 * 2 1 4 4 C 1.50698 * 109.47048 * 239.99859 * 2 1 3 5 5 H 1.08003 * 120.00089 * 240.00045 * 4 2 1 6 6 C 1.37883 * 120.00045 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99957 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47282 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46866 * 120.00083 * 8 6 4 11 11 H 1.48500 * 109.47452 * 240.00108 * 8 6 4 12 12 C 1.52998 * 109.47224 * 119.99915 * 2 1 3 13 13 N 1.46500 * 109.47140 * 300.00093 * 12 2 1 14 14 C 1.34784 * 120.00183 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99622 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00106 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47224 * 179.97438 * 16 14 13 18 18 C 1.38269 * 119.94432 * 89.99865 * 17 16 14 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38140 * 119.94299 * 359.46795 * 22 20 19 24 24 H 1.09009 * 109.47142 * 300.00315 * 1 2 3 25 25 H 1.08997 * 109.47124 * 60.00063 * 1 2 3 26 26 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47141 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47155 * 300.00188 * 3 2 1 29 29 H 1.08999 * 109.47376 * 59.99768 * 3 2 1 30 30 H 0.96993 * 119.99782 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47384 * 179.97438 * 12 2 1 32 32 H 1.09005 * 109.47180 * 59.99423 * 12 2 1 33 33 H 0.97000 * 120.00465 * 359.97438 * 13 12 2 34 34 H 1.08997 * 109.47005 * 59.99785 * 16 14 13 35 35 H 1.08997 * 109.46854 * 300.00051 * 16 14 13 36 36 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 38 38 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 39 39 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 40 40 H 1.08003 * 119.97390 * 180.23377 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1474 -2.2864 -3.6037 10 1 1.1676 -1.5868 -4.8164 11 1 3.1471 -0.1859 -4.8161 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6696 15 8 2.5750 -1.4768 3.7808 16 6 1.3759 0.2200 4.9000 17 6 1.8781 -0.4904 6.1305 18 6 3.0866 -0.1244 6.6938 19 6 3.5495 -0.7744 7.8214 20 6 2.8004 -1.7949 8.3890 21 8 3.2533 -2.4355 9.4986 22 6 1.5906 -2.1637 7.8189 23 6 1.1296 -1.5071 6.6943 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.7088 1.1612 -3.4844 31 1 3.1300 -0.7216 1.2490 32 1 1.6766 -1.7489 1.2493 33 1 0.9943 0.7583 2.3565 34 1 0.2859 0.2200 4.9004 35 1 1.7392 1.2476 4.8995 36 1 3.6693 0.6703 6.2517 37 1 4.4938 -0.4885 8.2608 38 1 2.9683 -2.0317 10.3298 39 1 1.0078 -2.9608 8.2563 40 1 0.1861 -1.7913 6.2523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457998219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:17 Heat of formation + Delta-G solvation = -89.090535 kcal Electronic energy + Delta-G solvation = -20932.870210 eV Core-core repulsion = 17711.388613 eV Total energy + Delta-G solvation = -3221.481597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11163 -40.22154 -38.24758 -37.56092 -34.95594 -33.21498 -32.41736 -31.91555 -28.44957 -27.54397 -27.34909 -26.16763 -23.75326 -22.83789 -21.31918 -20.57777 -19.33642 -18.36813 -17.62366 -17.14198 -16.96190 -16.57707 -16.28953 -16.04408 -15.85759 -14.93877 -14.68876 -14.65342 -14.58597 -14.32644 -13.97455 -13.36772 -13.13943 -13.11268 -12.97494 -12.69728 -12.61700 -12.48142 -12.46886 -12.22852 -12.13986 -11.47123 -11.36436 -11.25899 -10.85083 -10.66726 -10.39885 -9.91252 -9.88714 -9.41470 -8.02882 -6.18337 0.25969 0.43802 1.40310 1.44754 1.54004 1.76702 2.33029 2.48733 2.84027 3.20667 3.32203 3.74403 3.91751 4.08022 4.14366 4.38773 4.45220 4.48089 4.53218 4.66161 4.73899 4.75363 4.97535 5.03382 5.07834 5.09774 5.13304 5.21274 5.34672 5.39650 5.47570 5.63532 5.64429 5.67607 5.68977 5.93362 6.17356 6.23305 6.44453 6.74418 6.86387 6.88605 7.40708 7.49520 8.95998 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.003080 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.730977 B = 9088.727373 C = 9266.753720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.149 3.851 13 N -0.711 5.711 14 C 0.503 3.497 15 O -0.591 6.591 16 C -0.093 4.093 17 C -0.085 4.085 18 C -0.100 4.100 19 C -0.156 4.156 20 C 0.093 3.907 21 O -0.511 6.511 22 C -0.156 4.156 23 C -0.100 4.100 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.411 0.589 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.409 0.591 39 H 0.140 0.860 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 2.851 20.692 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.363 5.363 14 C 0.291 3.709 15 O -0.472 6.472 16 C -0.133 4.133 17 C -0.085 4.085 18 C -0.118 4.118 19 C -0.174 4.174 20 C 0.048 3.952 21 O -0.324 6.324 22 C -0.174 4.174 23 C -0.118 4.118 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.248 0.752 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.268 0.732 39 H 0.158 0.842 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.340 1.903 20.213 20.347 hybrid contribution 0.079 -0.112 -0.946 0.955 sum -1.261 1.791 19.268 19.392 Atomic orbital electron populations 1.21676 0.96999 0.98643 1.00588 1.18346 0.93325 0.93050 0.90179 1.21677 0.97859 0.97784 1.00591 1.21329 1.31626 1.12101 0.91787 0.94043 1.25429 0.95164 0.95602 1.00888 1.69905 1.37019 1.23233 1.23538 0.85737 0.78161 0.78734 0.80351 1.20187 1.20662 1.20655 1.21207 0.96765 0.94972 0.84601 1.46137 1.52951 1.32039 1.05185 1.21288 0.79806 0.84350 0.85446 1.90688 1.40227 1.28727 1.87515 1.20725 1.04367 1.00685 0.87488 1.19559 0.95605 0.97533 0.95829 1.21141 0.95169 1.00236 0.95272 1.21577 1.01207 0.96445 0.98175 1.18619 0.92885 0.93106 0.90556 1.84779 1.76100 1.55641 1.15910 1.21575 0.96192 1.01416 0.98218 1.21139 1.00603 0.94765 0.95306 0.93996 0.91942 0.96454 0.96455 0.91942 0.93989 0.93014 0.94785 0.94789 0.75180 0.85128 0.85124 0.84551 0.84168 0.73157 0.84176 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 4 C -0.53 -28.12 8.01 25.60 0.21 -27.92 16 5 H 0.04 2.27 7.74 -2.91 -0.02 2.25 16 6 C 0.03 1.52 5.15 84.66 0.44 1.96 16 7 N -0.90 -47.57 9.35 21.45 0.20 -47.37 16 8 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.28 4.50 86.38 0.39 6.67 16 13 N -0.71 -23.14 4.96 -463.06 -2.30 -25.44 16 14 C 0.50 15.92 7.82 87.66 0.69 16.61 16 15 O -0.59 -24.60 16.03 -3.03 -0.05 -24.65 16 16 C -0.09 -1.89 5.83 29.10 0.17 -1.72 16 17 C -0.08 -1.96 4.37 -19.85 -0.09 -2.05 16 18 C -0.10 -2.25 9.69 22.25 0.22 -2.04 16 19 C -0.16 -3.37 9.99 22.37 0.22 -3.15 16 20 C 0.09 2.03 6.71 22.51 0.15 2.18 16 21 O -0.51 -9.46 13.50 -92.38 -1.25 -10.71 16 22 C -0.16 -3.37 9.99 22.37 0.22 -3.15 16 23 C -0.10 -2.25 9.69 22.25 0.22 -2.04 16 24 H 0.04 1.48 6.86 -2.38 -0.02 1.46 16 25 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 3.03 6.07 -2.38 -0.01 3.02 16 29 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 30 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.41 11.11 6.16 -92.71 -0.57 10.54 16 34 H 0.13 1.90 8.08 -2.39 -0.02 1.88 16 35 H 0.13 1.90 8.08 -2.39 -0.02 1.88 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.41 3.03 9.06 -74.06 -0.67 2.36 16 39 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -68.00 331.23 2.41 -65.59 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.19 Total: 19.53 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.96 Total: -21.68 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -2.10 Total: -72.80 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.30 Total: -35.36 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -68.00 2.41 -65.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.505 kcal (2) G-P(sol) polarization free energy of solvation -67.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds