Wall clock time and date at job start Mon Mar 30 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46873 * 2 1 4 4 C 1.50696 * 109.46992 * 240.00101 * 2 1 3 5 5 H 1.08002 * 119.99919 * 240.00408 * 4 2 1 6 6 C 1.37878 * 120.00118 * 60.00100 * 4 2 1 7 7 N 1.31512 * 120.00059 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99786 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46962 * 89.99906 * 8 6 4 10 10 H 1.48499 * 109.46741 * 209.99553 * 8 6 4 11 11 H 1.48491 * 109.47154 * 329.99787 * 8 6 4 12 12 C 1.53001 * 109.46853 * 119.99890 * 2 1 3 13 13 N 1.46495 * 109.47300 * 300.00014 * 12 2 1 14 14 C 1.34774 * 120.00241 * 180.02562 * 13 12 2 15 15 O 1.21556 * 119.99787 * 359.97438 * 14 13 12 16 16 C 1.47844 * 120.00240 * 179.97438 * 14 13 12 17 17 C 1.39591 * 120.14241 * 359.97438 * 16 14 13 18 18 C 1.37939 * 119.85169 * 180.02562 * 17 16 14 19 19 C 1.38390 * 120.14234 * 359.74648 * 18 17 16 20 20 C 1.38336 * 120.29029 * 0.51287 * 19 18 17 21 21 C 1.50699 * 119.92398 * 179.76654 * 20 19 18 22 22 O 1.42903 * 109.47152 * 269.72534 * 21 20 19 23 23 C 1.37977 * 120.14712 * 359.48550 * 20 19 18 24 24 H 1.09003 * 109.47329 * 300.00390 * 1 2 3 25 25 H 1.09000 * 109.47070 * 59.99946 * 1 2 3 26 26 H 1.09002 * 109.47516 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46587 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47317 * 299.99903 * 3 2 1 29 29 H 1.08994 * 109.47335 * 59.99934 * 3 2 1 30 30 H 0.97003 * 119.99596 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46465 * 180.02562 * 12 2 1 32 32 H 1.08993 * 109.46806 * 60.00222 * 12 2 1 33 33 H 0.97005 * 120.00107 * 359.97438 * 13 12 2 34 34 H 1.07993 * 120.07523 * 0.02562 * 17 16 14 35 35 H 1.07994 * 119.92983 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.85228 * 180.27502 * 19 18 17 37 37 H 1.08997 * 109.47198 * 149.72212 * 21 20 19 38 38 H 1.09008 * 109.47393 * 29.71929 * 21 20 19 39 39 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.07087 * 180.22989 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4908 3.6695 15 8 2.5764 -1.4791 3.7811 16 6 1.3852 0.2065 4.8767 17 6 0.5829 1.3420 4.7520 18 6 0.1273 1.9882 5.8823 19 6 0.4596 1.5100 7.1377 20 6 1.2586 0.3883 7.2681 21 6 1.6197 -0.1222 8.6392 22 8 2.8344 0.4935 9.0722 23 6 1.7210 -0.2674 6.1456 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 0.7081 1.1608 -3.4844 31 1 3.1299 -0.7208 1.2494 32 1 1.6766 -1.7488 1.2492 33 1 0.9942 0.7583 2.3564 34 1 0.3196 1.7138 3.7729 35 1 -0.4938 2.8666 5.7874 36 1 0.0966 2.0170 8.0195 37 1 1.7538 -1.2032 8.6007 38 1 0.8201 0.1200 9.3394 39 1 3.1280 0.2106 9.9491 40 1 2.3417 -1.1452 6.2488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458016588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:36 Heat of formation + Delta-G solvation = -70.298564 kcal Electronic energy + Delta-G solvation = -21092.019529 eV Core-core repulsion = 17871.352813 eV Total energy + Delta-G solvation = -3220.666716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.09243 -38.54620 -36.77072 -36.30381 -33.43855 -31.98011 -31.24203 -30.58485 -26.31520 -25.73874 -25.71494 -25.13042 -23.15390 -21.86617 -19.92376 -18.86370 -17.73792 -17.59914 -16.29192 -15.87746 -15.72126 -15.06963 -14.79589 -14.76118 -14.48580 -13.86583 -13.73479 -13.32920 -13.06759 -12.92015 -12.58322 -12.26186 -12.14152 -11.67727 -11.39489 -11.22283 -11.12086 -10.87292 -10.69903 -10.39863 -10.37600 -10.20939 -9.65084 -9.64712 -9.27778 -9.04728 -9.03448 -8.80108 -8.45556 -8.31242 -6.02772 -4.12811 0.83605 1.19093 3.01482 3.28340 3.35308 3.39182 3.66179 3.84566 4.22779 4.39885 4.64304 4.70768 4.82019 4.97948 5.04363 5.16574 5.24014 5.24118 5.46698 5.69497 5.85441 6.18473 6.24606 6.28643 6.31870 6.36605 6.49680 6.74422 6.76496 6.80665 6.93101 7.00261 7.00864 7.31936 7.34198 7.54483 7.68771 7.99884 8.02111 8.14101 8.37510 8.65349 8.87879 9.53086 10.98737 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.003400 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.892550 B = 8233.318363 C = 8659.712284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.546 3.454 15 O -0.549 6.549 16 C -0.127 4.127 17 C -0.080 4.080 18 C -0.129 4.129 19 C -0.081 4.081 20 C -0.107 4.107 21 C 0.119 3.881 22 O -0.567 6.567 23 C -0.043 4.043 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.397 0.603 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.379 0.621 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 2.739 19.505 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.360 5.360 14 C 0.332 3.668 15 O -0.428 6.428 16 C -0.130 4.130 17 C -0.099 4.099 18 C -0.147 4.147 19 C -0.099 4.099 20 C -0.107 4.107 21 C 0.042 3.958 22 O -0.373 6.373 23 C -0.062 4.062 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.226 0.774 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.745 2.431 18.792 19.147 hybrid contribution 0.016 -0.300 -0.411 0.509 sum -2.729 2.132 18.381 18.705 Atomic orbital electron populations 1.21839 0.97746 0.99247 1.00059 1.18363 0.92810 0.92789 0.90544 1.21838 0.98690 0.98313 1.00057 1.20987 1.31514 1.12113 0.89863 0.92382 1.24879 0.94857 0.94904 0.98859 1.69802 1.36686 1.22755 1.23236 0.86562 0.79338 0.79380 0.82546 1.20710 1.21262 1.19880 1.21773 0.98302 0.95865 0.83210 1.46258 1.52218 1.31633 1.05888 1.18249 0.80794 0.84250 0.83477 1.90734 1.38667 1.26489 1.86951 1.20143 1.01239 0.97497 0.94170 1.21456 0.95156 0.93875 0.99394 1.21089 1.01080 1.00518 0.92048 1.21190 0.96413 0.94619 0.97717 1.19545 0.99790 0.97217 0.94177 1.20958 0.86695 0.96121 0.92054 1.86592 1.41600 1.70129 1.38950 1.21154 0.95797 0.98853 0.90362 0.97594 0.89515 0.95368 0.95349 0.89519 0.97584 0.92996 0.92498 0.92499 0.76624 0.85242 0.85181 0.85723 0.92478 0.92657 0.77351 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.31 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.59 9.35 55.43 0.52 -23.07 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 N -0.71 -13.15 4.91 -61.26 -0.30 -13.45 16 14 C 0.55 10.19 7.77 -12.33 -0.10 10.09 16 15 O -0.55 -12.01 16.35 5.32 0.09 -11.92 16 16 C -0.13 -1.94 5.87 -104.97 -0.62 -2.56 16 17 C -0.08 -1.01 9.54 -39.19 -0.37 -1.38 16 18 C -0.13 -1.36 10.03 -39.63 -0.40 -1.76 16 19 C -0.08 -0.83 9.69 -39.49 -0.38 -1.22 16 20 C -0.11 -1.24 5.50 -104.68 -0.58 -1.82 16 21 C 0.12 1.04 7.17 36.01 0.26 1.30 16 22 O -0.57 -5.40 13.64 -35.23 -0.48 -5.89 16 23 C -0.04 -0.60 9.24 -39.19 -0.36 -0.96 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.40 6.60 4.20 -40.82 -0.17 6.43 16 34 H 0.13 1.48 6.41 -52.49 -0.34 1.14 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.06 0.35 8.08 -51.92 -0.42 -0.06 16 39 H 0.38 1.62 9.12 45.56 0.42 2.04 16 40 H 0.14 1.95 7.65 -52.49 -0.40 1.54 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -31.05 328.40 -7.41 -38.46 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.75 Total: 6.72 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.41 Total: -11.54 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.22 Total: -36.52 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.39 Total: -17.81 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.05 -7.41 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458016588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.835 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds