Wall clock time and date at job start Mon Mar 30 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46873 * 2 1 4 4 C 1.50696 * 109.46992 * 240.00101 * 2 1 3 5 5 H 1.08002 * 119.99919 * 240.00408 * 4 2 1 6 6 C 1.37878 * 120.00118 * 60.00100 * 4 2 1 7 7 N 1.31512 * 120.00059 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99786 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46962 * 89.99906 * 8 6 4 10 10 H 1.48499 * 109.46741 * 209.99553 * 8 6 4 11 11 H 1.48491 * 109.47154 * 329.99787 * 8 6 4 12 12 C 1.53001 * 109.46853 * 119.99890 * 2 1 3 13 13 N 1.46495 * 109.47300 * 300.00014 * 12 2 1 14 14 C 1.34774 * 120.00241 * 180.02562 * 13 12 2 15 15 O 1.21556 * 119.99787 * 359.97438 * 14 13 12 16 16 C 1.47844 * 120.00240 * 179.97438 * 14 13 12 17 17 C 1.39591 * 120.14241 * 359.97438 * 16 14 13 18 18 C 1.37939 * 119.85169 * 180.02562 * 17 16 14 19 19 C 1.38390 * 120.14234 * 359.74648 * 18 17 16 20 20 C 1.38336 * 120.29029 * 0.51287 * 19 18 17 21 21 C 1.50699 * 119.92398 * 179.76654 * 20 19 18 22 22 O 1.42903 * 109.47152 * 269.72534 * 21 20 19 23 23 C 1.37977 * 120.14712 * 359.48550 * 20 19 18 24 24 H 1.09003 * 109.47329 * 300.00390 * 1 2 3 25 25 H 1.09000 * 109.47070 * 59.99946 * 1 2 3 26 26 H 1.09002 * 109.47516 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46587 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47317 * 299.99903 * 3 2 1 29 29 H 1.08994 * 109.47335 * 59.99934 * 3 2 1 30 30 H 0.97003 * 119.99596 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46465 * 180.02562 * 12 2 1 32 32 H 1.08993 * 109.46806 * 60.00222 * 12 2 1 33 33 H 0.97005 * 120.00107 * 359.97438 * 13 12 2 34 34 H 1.07993 * 120.07523 * 0.02562 * 17 16 14 35 35 H 1.07994 * 119.92983 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.85228 * 180.27502 * 19 18 17 37 37 H 1.08997 * 109.47198 * 149.72212 * 21 20 19 38 38 H 1.09008 * 109.47393 * 29.71929 * 21 20 19 39 39 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.07087 * 180.22989 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4865 -0.1414 -5.1123 11 1 3.6292 -1.7583 -3.7122 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8775 -0.4908 3.6695 15 8 2.5764 -1.4791 3.7811 16 6 1.3852 0.2065 4.8767 17 6 0.5829 1.3420 4.7520 18 6 0.1273 1.9882 5.8823 19 6 0.4596 1.5100 7.1377 20 6 1.2586 0.3883 7.2681 21 6 1.6197 -0.1222 8.6392 22 8 2.8344 0.4935 9.0722 23 6 1.7210 -0.2674 6.1456 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 0.7081 1.1608 -3.4844 31 1 3.1299 -0.7208 1.2494 32 1 1.6766 -1.7488 1.2492 33 1 0.9942 0.7583 2.3564 34 1 0.3196 1.7138 3.7729 35 1 -0.4938 2.8666 5.7874 36 1 0.0966 2.0170 8.0195 37 1 1.7538 -1.2032 8.6007 38 1 0.8201 0.1200 9.3394 39 1 3.1280 0.2106 9.9491 40 1 2.3417 -1.1452 6.2488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458016588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:36 Heat of formation + Delta-G solvation = -91.455845 kcal Electronic energy + Delta-G solvation = -21092.936977 eV Core-core repulsion = 17871.352813 eV Total energy + Delta-G solvation = -3221.584165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32463 -39.73773 -38.13118 -37.44280 -35.13857 -33.24783 -32.37796 -31.98917 -27.65956 -27.58745 -27.13513 -26.71272 -24.44211 -22.77814 -21.27974 -20.66647 -18.88119 -18.35576 -17.87067 -17.21591 -16.97743 -16.52411 -16.33273 -16.09163 -15.73614 -14.91905 -14.70698 -14.69281 -14.62210 -14.49320 -14.02675 -13.63113 -13.22638 -13.13363 -13.05243 -12.70417 -12.61117 -12.59703 -12.27334 -12.14323 -11.96280 -11.51397 -11.34760 -11.03731 -10.92138 -10.71968 -10.41645 -10.17520 -9.94790 -9.83344 -8.03641 -6.19458 -0.17638 0.28329 1.42197 1.44957 1.53371 1.81648 2.21076 2.47661 2.77598 3.20026 3.52337 3.67225 3.87659 4.01930 4.12304 4.26620 4.34399 4.38038 4.47057 4.53156 4.62909 4.68886 4.84182 4.95108 4.98053 5.02551 5.09248 5.16600 5.29252 5.31994 5.37153 5.48577 5.52686 5.64933 5.66066 5.88117 6.12738 6.18698 6.41585 6.57418 6.84029 6.92792 7.18953 7.48272 8.95513 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040226 B = 0.003400 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.892550 B = 8233.318363 C = 8659.712284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.146 3.854 13 N -0.703 5.703 14 C 0.545 3.455 15 O -0.591 6.591 16 C -0.153 4.153 17 C -0.084 4.084 18 C -0.123 4.123 19 C -0.071 4.071 20 C -0.114 4.114 21 C 0.118 3.882 22 O -0.591 6.591 23 C -0.061 4.061 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.017 0.983 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.261 0.739 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.408 0.592 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.401 0.599 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 4.356 21.468 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.022 3.978 13 N -0.354 5.354 14 C 0.334 3.666 15 O -0.474 6.474 16 C -0.156 4.156 17 C -0.103 4.103 18 C -0.140 4.140 19 C -0.089 4.089 20 C -0.114 4.114 21 C 0.041 3.959 22 O -0.400 6.400 23 C -0.080 4.080 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.247 0.753 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.251 0.749 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.055 4.066 20.778 21.557 hybrid contribution 0.410 -0.774 -0.906 1.261 sum -3.645 3.292 19.872 20.470 Atomic orbital electron populations 1.21683 0.96966 0.98775 1.00488 1.18357 0.93371 0.93041 0.90096 1.21685 0.97965 0.97814 1.00472 1.21268 1.31889 1.12244 0.91577 0.93752 1.25445 0.95099 0.95573 1.00936 1.69898 1.36897 1.23222 1.23681 0.85746 0.78639 0.78509 0.79839 1.20434 1.20705 1.20160 1.21354 0.97124 0.95237 0.84062 1.46046 1.52406 1.31813 1.05109 1.18854 0.79779 0.83703 0.84312 1.90700 1.40618 1.28490 1.87572 1.19905 1.03844 0.99192 0.92670 1.21627 0.94646 0.93031 1.00966 1.21508 1.00348 1.00938 0.91244 1.21667 0.94652 0.93533 0.99035 1.19923 0.99440 0.97345 0.94677 1.21041 0.87471 0.96234 0.91150 1.86520 1.42069 1.70579 1.40864 1.21181 0.96578 0.99111 0.91137 0.94486 0.91608 0.96255 0.96341 0.91593 0.94523 0.92940 0.94258 0.94087 0.75308 0.84241 0.81711 0.82196 0.92155 0.89514 0.74870 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 4 C -0.53 -28.49 8.01 25.60 0.21 -28.28 16 5 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.56 5.15 84.66 0.44 1.99 16 7 N -0.90 -47.92 9.35 21.45 0.20 -47.72 16 8 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.15 6.48 4.50 86.38 0.39 6.86 16 13 N -0.70 -26.08 4.91 -465.99 -2.29 -28.37 16 14 C 0.54 20.76 7.77 86.79 0.67 21.44 16 15 O -0.59 -27.08 16.35 -3.89 -0.06 -27.15 16 16 C -0.15 -4.61 5.87 -20.09 -0.12 -4.72 16 17 C -0.08 -1.93 9.54 22.53 0.21 -1.72 16 18 C -0.12 -2.09 10.03 22.23 0.22 -1.87 16 19 C -0.07 -1.17 9.69 22.33 0.22 -0.95 16 20 C -0.11 -2.38 5.50 -19.90 -0.11 -2.49 16 21 C 0.12 1.76 7.17 71.24 0.51 2.27 16 22 O -0.59 -9.92 13.64 -148.98 -2.03 -11.95 16 23 C -0.06 -1.70 9.24 22.53 0.21 -1.50 16 24 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 25 H 0.07 3.25 6.07 -2.39 -0.01 3.23 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.07 3.27 6.07 -2.39 -0.01 3.25 16 29 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 30 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.41 13.04 4.20 -92.70 -0.39 12.65 16 34 H 0.14 2.82 6.41 -2.91 -0.02 2.80 16 35 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 38 H 0.09 0.75 8.08 -2.38 -0.02 0.73 16 39 H 0.40 2.50 9.12 -74.06 -0.68 1.82 16 40 H 0.12 3.59 7.65 -2.91 -0.02 3.57 16 Total: -1.00 -68.59 328.40 1.83 -66.77 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.00 Total: 19.83 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 3.99 Total: -16.29 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.09 Total: -76.09 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -2.10 Total: -39.10 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -68.59 1.83 -66.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458016588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.690 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds