Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47300 * 2 1 4 4 C 1.50701 * 109.47095 * 239.99910 * 2 1 3 5 5 H 1.07997 * 119.99855 * 240.00096 * 4 2 1 6 6 C 1.37882 * 119.99886 * 59.99988 * 4 2 1 7 7 N 1.31508 * 120.00297 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47213 * 90.00043 * 8 6 4 10 10 H 1.48500 * 109.47229 * 210.00047 * 8 6 4 11 11 H 1.48506 * 109.47152 * 330.00287 * 8 6 4 12 12 C 1.52994 * 109.47041 * 119.99772 * 2 1 3 13 13 N 1.46496 * 109.47414 * 299.99976 * 12 2 1 14 14 C 1.34774 * 120.00281 * 179.97438 * 13 12 2 15 15 O 1.21694 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.46656 * 120.00352 * 179.97438 * 14 13 12 17 17 O 1.34942 * 126.00333 * 0.04896 * 16 14 13 18 18 C 1.33954 * 109.37664 * 179.97438 * 17 16 14 19 19 C 1.35145 * 108.75142 * 0.02562 * 18 17 16 20 20 C 1.36469 * 126.00852 * 179.97438 * 16 14 13 21 21 C 1.51072 * 143.67076 * 0.04686 * 20 16 14 22 22 C 1.54377 * 105.24220 * 197.15463 * 21 20 16 23 23 C 1.51140 * 143.44130 * 179.97438 * 19 18 17 24 24 H 1.08995 * 109.46936 * 300.00555 * 1 2 3 25 25 H 1.09005 * 109.46971 * 59.99806 * 1 2 3 26 26 H 1.08992 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46923 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46562 * 299.99820 * 3 2 1 29 29 H 1.08995 * 109.47122 * 59.99563 * 3 2 1 30 30 H 0.96996 * 120.00162 * 179.97438 * 7 6 4 31 31 H 1.09008 * 109.47127 * 179.97438 * 12 2 1 32 32 H 1.08996 * 109.47391 * 60.00230 * 12 2 1 33 33 H 0.97004 * 119.99803 * 359.97438 * 13 12 2 34 34 H 1.07994 * 125.62301 * 180.25735 * 18 17 16 35 35 H 1.09003 * 110.29018 * 316.09506 * 21 20 16 36 36 H 1.09002 * 110.29614 * 78.11070 * 21 20 16 37 37 H 1.08995 * 110.76343 * 91.85657 * 22 21 20 38 38 H 1.09000 * 110.75791 * 215.04954 * 22 21 20 39 39 H 1.09000 * 110.29225 * 281.80118 * 23 19 18 40 40 H 1.08998 * 110.29123 * 43.90858 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4872 -0.1403 -5.1121 11 1 3.6308 -1.7566 -3.7119 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5764 -1.4807 3.7812 16 6 1.3885 0.2004 4.8669 17 8 0.6095 1.3022 4.8844 18 6 0.3624 1.6517 6.1537 19 6 0.9828 0.7752 6.9743 20 6 1.6407 -0.1579 6.1594 21 6 2.3549 -1.1696 7.0246 22 6 1.7171 -1.0296 8.4235 23 6 1.2247 0.4344 8.4267 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 0.7096 1.1617 -3.4844 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7488 1.2493 33 1 0.9943 0.7583 2.3563 34 1 -0.2370 2.4927 6.4692 35 1 2.1983 -2.1762 6.6369 36 1 3.4204 -0.9440 7.0691 37 1 0.8818 -1.7203 8.5382 38 1 2.4599 -1.1908 9.2047 39 1 1.9862 1.0910 8.8473 40 1 0.2977 0.5177 8.9940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458042637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = -29.218985 kcal Electronic energy + Delta-G solvation = -21482.086575 eV Core-core repulsion = 18263.201203 eV Total energy + Delta-G solvation = -3218.885372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.85265 -39.06080 -37.39725 -36.35143 -33.31903 -31.06763 -30.71522 -30.24661 -27.38816 -25.71782 -25.62019 -24.95940 -23.03839 -21.63184 -20.29192 -19.52304 -18.77475 -17.53762 -16.54096 -16.07477 -15.68477 -15.26719 -15.09830 -14.65919 -14.47206 -14.08002 -13.64839 -13.11419 -12.91501 -12.84933 -12.72132 -12.20057 -11.85206 -11.69186 -11.39202 -11.34660 -11.31077 -11.19997 -10.86844 -10.69594 -10.38687 -10.22469 -9.89654 -9.63647 -9.33230 -9.32049 -8.79283 -8.70188 -8.41972 -8.28735 -6.01790 -4.12099 1.17276 2.26752 2.78667 3.28834 3.35796 3.39527 3.48072 3.72989 3.94372 4.40452 4.61250 4.79710 4.85166 4.99873 5.10481 5.24954 5.46584 5.53740 5.59429 5.70767 5.82219 5.97789 6.01875 6.09505 6.20150 6.30061 6.32510 6.50336 6.72429 6.81832 6.84619 6.97062 6.98475 7.01945 7.35202 7.56031 7.69532 7.98360 8.01034 8.14171 8.37291 8.54254 8.88374 9.53694 10.99694 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041696 B = 0.003632 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.361328 B = 7707.635256 C = 8164.493770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.703 5.703 14 C 0.590 3.410 15 O -0.530 6.530 16 C -0.051 4.051 17 O -0.155 6.155 18 C 0.003 3.997 19 C -0.221 4.221 20 C -0.117 4.117 21 C -0.053 4.053 22 C -0.119 4.119 23 C -0.044 4.044 24 H 0.007 0.993 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.007 0.993 30 H 0.260 0.740 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.403 0.597 34 H 0.208 0.792 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 2.206 19.299 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.353 5.353 14 C 0.375 3.625 15 O -0.410 6.410 16 C -0.103 4.103 17 O -0.050 6.050 18 C -0.067 4.067 19 C -0.222 4.222 20 C -0.120 4.120 21 C -0.090 4.090 22 C -0.156 4.156 23 C -0.082 4.082 24 H 0.026 0.974 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.363 1.745 18.905 19.035 hybrid contribution -0.037 0.065 -0.804 0.807 sum -1.400 1.809 18.102 18.246 Atomic orbital electron populations 1.21839 0.97685 0.99243 1.00183 1.18369 0.92882 0.92821 0.90424 1.21839 0.98624 0.98301 1.00184 1.20976 1.31559 1.12130 0.89830 0.92359 1.24881 0.94857 0.94906 0.98863 1.69802 1.36679 1.22684 1.23242 0.86561 0.79329 0.79368 0.82546 1.20708 1.21274 1.19880 1.21835 0.98396 0.95929 0.83058 1.46281 1.51759 1.31589 1.05622 1.16627 0.80806 0.83601 0.81464 1.90834 1.38720 1.25589 1.85820 1.21500 1.02334 0.91315 0.95129 1.84219 1.54369 1.37573 1.28857 1.23308 1.02495 1.00815 0.80040 1.21306 1.04153 0.98597 0.98160 1.21146 1.00237 0.99289 0.91313 1.20521 0.98882 0.97631 0.91973 1.22397 1.00612 0.95952 0.96669 1.20424 1.01236 0.96481 0.90010 0.97445 0.89516 0.95379 0.95373 0.89510 0.97445 0.92988 0.92284 0.92292 0.76088 0.77555 0.90006 0.89887 0.90877 0.90319 0.90403 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 4 C -0.51 -13.33 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.72 9.35 55.43 0.52 -23.20 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.13 2.82 4.50 -4.05 -0.02 2.80 16 13 N -0.70 -13.48 4.95 -61.63 -0.31 -13.79 16 14 C 0.59 11.31 7.79 -12.86 -0.10 11.21 16 15 O -0.53 -11.47 16.87 5.19 0.09 -11.38 16 16 C -0.05 -0.84 7.13 -36.82 -0.26 -1.10 16 17 O -0.15 -2.24 10.40 4.85 0.05 -2.19 16 18 C 0.00 0.03 12.08 29.63 0.36 0.39 16 19 C -0.22 -2.60 6.93 -104.74 -0.73 -3.32 16 20 C -0.12 -1.70 6.66 -104.31 -0.69 -2.39 16 21 C -0.05 -0.64 6.76 -26.98 -0.18 -0.82 16 22 C -0.12 -1.02 7.06 -25.25 -0.18 -1.20 16 23 C -0.04 -0.38 6.76 -26.91 -0.18 -0.56 16 24 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 25 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.19 6.07 -51.92 -0.32 1.87 16 29 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.40 7.26 5.92 -40.82 -0.24 7.02 16 34 H 0.21 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -29.35 325.22 -7.38 -36.72 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.78 Total: 4.35 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.83 Total: -11.18 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.21 Total: -36.98 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.14 Total: -13.57 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.35 -7.38 -36.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458042637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.506 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds