Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47300 * 2 1 4 4 C 1.50701 * 109.47095 * 239.99910 * 2 1 3 5 5 H 1.07997 * 119.99855 * 240.00096 * 4 2 1 6 6 C 1.37882 * 119.99886 * 59.99988 * 4 2 1 7 7 N 1.31508 * 120.00297 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99885 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47213 * 90.00043 * 8 6 4 10 10 H 1.48500 * 109.47229 * 210.00047 * 8 6 4 11 11 H 1.48506 * 109.47152 * 330.00287 * 8 6 4 12 12 C 1.52994 * 109.47041 * 119.99772 * 2 1 3 13 13 N 1.46496 * 109.47414 * 299.99976 * 12 2 1 14 14 C 1.34774 * 120.00281 * 179.97438 * 13 12 2 15 15 O 1.21694 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.46656 * 120.00352 * 179.97438 * 14 13 12 17 17 O 1.34942 * 126.00333 * 0.04896 * 16 14 13 18 18 C 1.33954 * 109.37664 * 179.97438 * 17 16 14 19 19 C 1.35145 * 108.75142 * 0.02562 * 18 17 16 20 20 C 1.36469 * 126.00852 * 179.97438 * 16 14 13 21 21 C 1.51072 * 143.67076 * 0.04686 * 20 16 14 22 22 C 1.54377 * 105.24220 * 197.15463 * 21 20 16 23 23 C 1.51140 * 143.44130 * 179.97438 * 19 18 17 24 24 H 1.08995 * 109.46936 * 300.00555 * 1 2 3 25 25 H 1.09005 * 109.46971 * 59.99806 * 1 2 3 26 26 H 1.08992 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46923 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46562 * 299.99820 * 3 2 1 29 29 H 1.08995 * 109.47122 * 59.99563 * 3 2 1 30 30 H 0.96996 * 120.00162 * 179.97438 * 7 6 4 31 31 H 1.09008 * 109.47127 * 179.97438 * 12 2 1 32 32 H 1.08996 * 109.47391 * 60.00230 * 12 2 1 33 33 H 0.97004 * 119.99803 * 359.97438 * 13 12 2 34 34 H 1.07994 * 125.62301 * 180.25735 * 18 17 16 35 35 H 1.09003 * 110.29018 * 316.09506 * 21 20 16 36 36 H 1.09002 * 110.29614 * 78.11070 * 21 20 16 37 37 H 1.08995 * 110.76343 * 91.85657 * 22 21 20 38 38 H 1.09000 * 110.75791 * 215.04954 * 22 21 20 39 39 H 1.09000 * 110.29225 * 281.80118 * 23 19 18 40 40 H 1.08998 * 110.29123 * 43.90858 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4872 -0.1403 -5.1121 11 1 3.6308 -1.7566 -3.7119 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5764 -1.4807 3.7812 16 6 1.3885 0.2004 4.8669 17 8 0.6095 1.3022 4.8844 18 6 0.3624 1.6517 6.1537 19 6 0.9828 0.7752 6.9743 20 6 1.6407 -0.1579 6.1594 21 6 2.3549 -1.1696 7.0246 22 6 1.7171 -1.0296 8.4235 23 6 1.2247 0.4344 8.4267 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 0.7096 1.1617 -3.4844 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7488 1.2493 33 1 0.9943 0.7583 2.3563 34 1 -0.2370 2.4927 6.4692 35 1 2.1983 -2.1762 6.6369 36 1 3.4204 -0.9440 7.0691 37 1 0.8818 -1.7203 8.5382 38 1 2.4599 -1.1908 9.2047 39 1 1.9862 1.0910 8.8473 40 1 0.2977 0.5177 8.9940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458042637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = -46.174143 kcal Electronic energy + Delta-G solvation = -21482.821806 eV Core-core repulsion = 18263.201203 eV Total energy + Delta-G solvation = -3219.620603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.86957 -40.62395 -38.33746 -38.07803 -35.08239 -32.87563 -31.64756 -31.34217 -28.44826 -27.60810 -27.43030 -26.65824 -24.13696 -22.72073 -21.31559 -20.85260 -20.55502 -18.74608 -17.84180 -17.59075 -17.01913 -16.77865 -16.43856 -16.16974 -15.84613 -15.19440 -14.98091 -14.76722 -14.53824 -14.10163 -13.95968 -13.65371 -13.23791 -13.13167 -12.71797 -12.66547 -12.64512 -12.59118 -12.29190 -12.15272 -12.06900 -12.04708 -11.52974 -11.51551 -11.16527 -10.73890 -10.42861 -10.30056 -10.11559 -9.53037 -8.03437 -6.19739 0.01306 1.32605 1.42949 1.45402 1.53903 1.69134 2.07949 2.30991 2.48990 3.05801 3.20220 3.73236 3.84987 4.14099 4.16882 4.20645 4.36007 4.45331 4.55153 4.66949 4.80250 4.83574 4.91617 4.96145 5.01340 5.01770 5.06691 5.11299 5.14852 5.20281 5.25282 5.34259 5.45788 5.48141 5.62879 5.65535 5.84333 6.09853 6.17000 6.40052 6.50935 6.83647 7.04061 7.48057 8.95938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041696 B = 0.003632 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.361328 B = 7707.635256 C = 8164.493770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.275 1.275 12 C 0.145 3.855 13 N -0.700 5.700 14 C 0.591 3.409 15 O -0.566 6.566 16 C -0.097 4.097 17 O -0.166 6.166 18 C 0.023 3.977 19 C -0.230 4.230 20 C -0.122 4.122 21 C -0.063 4.063 22 C -0.111 4.111 23 C -0.041 4.041 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.410 0.590 34 H 0.256 0.744 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 3.262 21.666 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.200 1.200 12 C 0.022 3.978 13 N -0.350 5.350 14 C 0.378 3.622 15 O -0.448 6.448 16 C -0.148 4.148 17 O -0.062 6.062 18 C -0.046 4.046 19 C -0.231 4.231 20 C -0.125 4.125 21 C -0.100 4.100 22 C -0.148 4.148 23 C -0.078 4.078 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.247 0.753 34 H 0.272 0.728 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.106 2.814 21.281 21.570 hybrid contribution 0.167 -0.224 -1.430 1.457 sum -1.939 2.590 19.851 20.113 Atomic orbital electron populations 1.21679 0.97179 0.98758 1.00270 1.18367 0.93242 0.93049 0.90270 1.21680 0.98050 0.97886 1.00271 1.21253 1.31898 1.12282 0.91373 0.93423 1.25480 0.95086 0.95571 1.01067 1.69907 1.36987 1.23263 1.23692 0.85710 0.78691 0.78437 0.79673 1.20438 1.20809 1.19958 1.21430 0.97455 0.95304 0.83591 1.46085 1.52079 1.31704 1.05110 1.16937 0.79985 0.83198 0.82034 1.90795 1.40327 1.27206 1.86509 1.20930 1.05873 0.93568 0.94435 1.84190 1.54296 1.36965 1.30780 1.24358 1.00756 1.00904 0.78598 1.21818 1.03779 0.97901 0.99608 1.21694 0.99445 1.00082 0.91262 1.20724 0.99234 0.96186 0.93855 1.22428 1.01170 0.96430 0.94756 1.20547 1.02887 0.96257 0.88065 0.94988 0.91630 0.96098 0.96082 0.91625 0.94985 0.92962 0.93594 0.93590 0.75330 0.72811 0.91662 0.89748 0.90417 0.87844 0.88832 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.08 71.98 0.58 -5.01 16 2 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16 3 C -0.12 -5.59 8.08 71.98 0.58 -5.01 16 4 C -0.53 -28.43 8.01 25.60 0.21 -28.22 16 5 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 6 C 0.03 1.48 5.15 84.66 0.44 1.91 16 7 N -0.90 -48.55 9.35 21.45 0.20 -48.35 16 8 Si 0.95 42.92 29.54 68.60 2.03 44.94 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.15 6.49 4.50 86.38 0.39 6.88 16 13 N -0.70 -27.24 4.95 -467.12 -2.31 -29.56 16 14 C 0.59 23.23 7.79 86.44 0.67 23.90 16 15 O -0.57 -25.52 16.87 -4.33 -0.07 -25.59 16 16 C -0.10 -3.17 7.13 24.06 0.17 -3.00 16 17 O -0.17 -4.54 10.40 -5.55 -0.06 -4.60 16 18 C 0.02 0.42 12.08 67.11 0.81 1.23 16 19 C -0.23 -4.71 6.93 -19.94 -0.14 -4.85 16 20 C -0.12 -3.42 6.66 -19.66 -0.13 -3.55 16 21 C -0.06 -1.46 6.76 30.43 0.21 -1.25 16 22 C -0.11 -1.57 7.06 31.56 0.22 -1.35 16 23 C -0.04 -0.53 6.76 30.48 0.21 -0.33 16 24 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 25 H 0.06 3.33 6.07 -2.38 -0.01 3.31 16 26 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 3.33 6.07 -2.38 -0.01 3.31 16 29 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 30 H 0.26 13.52 8.31 -92.71 -0.77 12.74 16 31 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.41 14.64 5.92 -92.71 -0.55 14.09 16 34 H 0.26 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -65.06 325.22 4.47 -60.60 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.50 Total: 18.77 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 4.19 Total: -16.21 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -2.11 Total: -77.90 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.13 Total: -30.19 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -65.06 4.47 -60.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458042637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.423 kcal (2) G-P(sol) polarization free energy of solvation -65.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds