Wall clock time and date at job start Mon Mar 30 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00169 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00047 * 4 2 1 6 6 C 1.37875 * 120.00355 * 59.99679 * 4 2 1 7 7 N 1.31520 * 119.99521 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00556 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47148 * 59.99955 * 8 6 4 10 10 H 1.48498 * 109.47295 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46848 * 299.99842 * 8 6 4 12 12 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 13 13 N 1.46906 * 109.47053 * 300.00316 * 12 2 1 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50704 * 109.47030 * 179.97438 * 14 13 12 16 16 C 1.38280 * 119.98600 * 259.72533 * 15 14 13 17 17 C 1.38217 * 120.14250 * 179.67670 * 16 15 14 18 18 C 1.38279 * 120.13955 * 0.65240 * 17 16 15 19 19 C 1.38505 * 120.02974 * 359.63777 * 18 17 16 20 20 C 1.38502 * 119.98526 * 79.99728 * 15 14 13 21 21 O 1.36505 * 131.53926 * 0.02562 * 20 15 14 22 22 C 1.43994 * 105.48623 * 162.67866 * 21 20 15 23 23 O 1.36500 * 131.53386 * 180.02562 * 19 18 17 24 24 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 25 25 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 26 26 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 29 29 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 30 30 H 0.96999 * 120.00022 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47056 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47006 * 60.00102 * 12 2 1 33 33 H 1.00902 * 111.00068 * 56.04103 * 13 12 2 34 34 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 35 35 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 36 36 H 1.08000 * 119.92632 * 0.02562 * 16 15 14 37 37 H 1.07998 * 119.92773 * 180.28436 * 17 16 15 38 38 H 1.08002 * 119.98397 * 179.65734 * 18 17 16 39 39 H 1.09001 * 110.57090 * 268.56860 * 22 21 20 40 40 H 1.08995 * 110.69612 * 145.75224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8270 -0.4198 -5.2204 11 1 3.8065 -1.1207 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.5004 0.0420 4.8772 16 6 2.3230 0.9202 5.5586 17 6 1.8468 1.6031 6.6618 18 6 0.5500 1.4010 7.0970 19 6 -0.2778 0.5184 6.4229 20 6 0.1999 -0.1644 5.3067 21 8 -0.7959 -0.9647 4.8259 22 6 -1.7526 -1.0734 5.8965 23 8 -1.5727 0.1459 6.6411 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7095 1.1618 -3.4843 31 1 3.1300 -0.7216 1.2489 32 1 1.6768 -1.7490 1.2492 33 1 0.5439 0.0413 2.4402 34 1 1.6572 -1.7226 3.6869 35 1 3.1109 -0.6954 3.6873 36 1 3.3380 1.0769 5.2245 37 1 2.4909 2.2916 7.1887 38 1 0.1822 1.9318 7.9627 39 1 -1.5320 -1.9392 6.5208 40 1 -2.7668 -1.1352 5.5021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459690790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:38 Heat of formation + Delta-G solvation = -37.620802 kcal Electronic energy + Delta-G solvation = -21622.485081 eV Core-core repulsion = 18403.235379 eV Total energy + Delta-G solvation = -3219.249702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.20115 -38.23819 -36.81814 -36.27775 -34.04105 -31.56211 -30.02706 -29.88015 -25.93413 -25.69238 -25.50477 -25.13559 -23.16903 -22.88285 -21.39044 -18.44644 -18.07325 -17.68509 -17.15576 -16.36011 -15.85523 -15.20798 -14.70423 -14.46343 -14.36675 -14.07053 -13.88147 -13.48766 -13.00478 -12.88219 -12.67081 -12.34013 -12.26043 -11.95547 -11.70195 -11.13760 -11.02444 -10.94965 -10.91477 -10.61770 -10.53903 -10.13063 -10.02820 -9.33976 -9.09085 -8.75975 -8.57358 -8.25131 -8.12074 -7.66692 -5.87361 -3.97908 1.13032 1.16404 2.71762 3.34974 3.38849 3.39705 3.42147 3.52990 4.39526 4.47391 4.54655 4.74618 4.88911 5.02592 5.06479 5.18730 5.21526 5.37776 5.41715 5.65324 5.81697 6.00340 6.07055 6.26876 6.35753 6.37851 6.41657 6.51472 6.76585 6.93968 7.08385 7.13063 7.22161 7.43186 7.51094 7.75310 7.80084 7.86607 7.99610 8.25278 8.38713 8.59615 9.03287 9.66736 11.13121 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030376 B = 0.003886 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.568741 B = 7203.479405 C = 7578.776873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.075 3.925 13 N -0.679 5.679 14 C 0.097 3.903 15 C -0.050 4.050 16 C -0.093 4.093 17 C -0.112 4.112 18 C -0.107 4.107 19 C 0.027 3.973 20 C 0.036 3.964 21 O -0.304 6.304 22 C 0.213 3.787 23 O -0.312 6.312 24 H 0.010 0.990 25 H 0.083 0.917 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.074 0.926 29 H 0.020 0.980 30 H 0.258 0.742 31 H 0.057 0.943 32 H 0.013 0.987 33 H 0.340 0.660 34 H 0.034 0.966 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 -1.125 19.270 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 C -0.176 4.176 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.053 4.053 13 N -0.312 5.312 14 C -0.033 4.033 15 C -0.052 4.052 16 C -0.112 4.112 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.017 4.017 20 C -0.009 4.009 21 O -0.219 6.219 22 C 0.101 3.899 23 O -0.228 6.228 24 H 0.029 0.971 25 H 0.101 0.899 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.160 0.840 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.098 0.902 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.196 -0.579 19.014 19.061 hybrid contribution -0.510 -1.486 -0.842 1.782 sum -1.706 -2.065 18.172 18.369 Atomic orbital electron populations 1.21827 0.98522 0.98357 1.00239 1.18089 0.92117 0.93086 0.89871 1.21634 0.97738 0.98179 1.00085 1.21068 1.31178 1.11799 0.90485 0.93064 1.24885 0.95068 0.94953 0.98653 1.69833 1.36809 1.22731 1.22971 0.86718 0.79163 0.79738 0.82663 1.20504 1.21381 1.20408 1.22180 0.98925 0.94468 0.89733 1.60725 1.16785 1.53137 1.00514 1.20831 1.00225 0.94338 0.87859 1.19049 0.88796 0.99253 0.98065 1.20893 1.00201 0.95083 0.95006 1.20900 0.94572 1.00204 0.97309 1.20023 0.92532 0.99467 1.00596 1.19784 0.84067 1.00786 0.97063 1.19674 0.90704 0.96030 0.94461 1.87423 1.30557 1.66672 1.37291 1.25590 0.95297 0.86848 0.82150 1.87338 1.25071 1.41025 1.69400 0.97096 0.89851 0.96250 0.96294 0.90765 0.96118 0.93162 0.92442 0.96844 0.84035 0.94823 0.90159 0.84330 0.84574 0.85084 0.90205 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 7.92 37.16 0.29 -2.95 16 2 C 0.07 1.71 0.57 -155.66 -0.09 1.62 16 3 C -0.12 -2.96 8.09 37.16 0.30 -2.66 16 4 C -0.51 -13.84 8.01 -34.44 -0.28 -14.12 16 5 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.85 9.35 55.43 0.52 -24.33 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.08 1.62 4.59 -3.82 -0.02 1.60 16 13 N -0.68 -12.88 5.70 -115.06 -0.66 -13.53 16 14 C 0.10 1.51 5.81 -4.98 -0.03 1.48 16 15 C -0.05 -0.72 5.40 -104.51 -0.56 -1.29 16 16 C -0.09 -1.11 9.66 -39.57 -0.38 -1.49 16 17 C -0.11 -1.14 10.04 -39.57 -0.40 -1.54 16 18 C -0.11 -1.20 10.06 -39.47 -0.40 -1.60 16 19 C 0.03 0.37 7.15 -39.09 -0.28 0.09 16 20 C 0.04 0.53 6.84 -39.09 -0.27 0.26 16 21 O -0.30 -4.44 11.40 -45.70 -0.52 -4.96 16 22 C 0.21 2.26 8.89 101.05 0.90 3.15 16 23 O -0.31 -4.02 11.40 -45.69 -0.52 -4.54 16 24 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 25 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 2.02 6.07 -51.93 -0.32 1.71 16 29 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.34 6.77 6.76 -39.29 -0.27 6.50 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 36 H 0.14 1.41 8.03 -52.49 -0.42 0.99 16 37 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -30.01 325.16 -8.41 -38.43 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.82 Total: 3.47 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -1.30 Total: -15.72 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.14 Total: -37.86 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.04 Total: -9.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.01 -8.41 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459690790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.805 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds