Wall clock time and date at job start Mon Mar 30 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47300 * 240.00169 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00047 * 4 2 1 6 6 C 1.37875 * 120.00355 * 59.99679 * 4 2 1 7 7 N 1.31520 * 119.99521 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00556 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47148 * 59.99955 * 8 6 4 10 10 H 1.48498 * 109.47295 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46848 * 299.99842 * 8 6 4 12 12 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 13 13 N 1.46906 * 109.47053 * 300.00316 * 12 2 1 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50704 * 109.47030 * 179.97438 * 14 13 12 16 16 C 1.38280 * 119.98600 * 259.72533 * 15 14 13 17 17 C 1.38217 * 120.14250 * 179.67670 * 16 15 14 18 18 C 1.38279 * 120.13955 * 0.65240 * 17 16 15 19 19 C 1.38505 * 120.02974 * 359.63777 * 18 17 16 20 20 C 1.38502 * 119.98526 * 79.99728 * 15 14 13 21 21 O 1.36505 * 131.53926 * 0.02562 * 20 15 14 22 22 C 1.43994 * 105.48623 * 162.67866 * 21 20 15 23 23 O 1.36500 * 131.53386 * 180.02562 * 19 18 17 24 24 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 25 25 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 26 26 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 29 29 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 30 30 H 0.96999 * 120.00022 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47056 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47006 * 60.00102 * 12 2 1 33 33 H 1.00902 * 111.00068 * 56.04103 * 13 12 2 34 34 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 35 35 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 36 36 H 1.08000 * 119.92632 * 0.02562 * 16 15 14 37 37 H 1.07998 * 119.92773 * 180.28436 * 17 16 15 38 38 H 1.08002 * 119.98397 * 179.65734 * 18 17 16 39 39 H 1.09001 * 110.57090 * 268.56860 * 22 21 20 40 40 H 1.08995 * 110.69612 * 145.75224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8270 -0.4198 -5.2204 11 1 3.8065 -1.1207 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.5004 0.0420 4.8772 16 6 2.3230 0.9202 5.5586 17 6 1.8468 1.6031 6.6618 18 6 0.5500 1.4010 7.0970 19 6 -0.2778 0.5184 6.4229 20 6 0.1999 -0.1644 5.3067 21 8 -0.7959 -0.9647 4.8259 22 6 -1.7526 -1.0734 5.8965 23 8 -1.5727 0.1459 6.6411 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7095 1.1618 -3.4843 31 1 3.1300 -0.7216 1.2489 32 1 1.6768 -1.7490 1.2492 33 1 0.5439 0.0413 2.4402 34 1 1.6572 -1.7226 3.6869 35 1 3.1109 -0.6954 3.6873 36 1 3.3380 1.0769 5.2245 37 1 2.4909 2.2916 7.1887 38 1 0.1822 1.9318 7.9627 39 1 -1.5320 -1.9392 6.5208 40 1 -2.7668 -1.1352 5.5021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459690790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:38 Heat of formation + Delta-G solvation = -55.759412 kcal Electronic energy + Delta-G solvation = -21623.271630 eV Core-core repulsion = 18403.235379 eV Total energy + Delta-G solvation = -3220.036251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.11635 -39.31129 -38.37937 -37.31700 -35.62002 -33.27237 -31.35121 -30.85804 -27.53297 -27.28166 -27.04079 -26.72596 -24.68603 -23.84516 -22.44834 -20.35138 -19.00138 -18.61247 -18.18389 -17.79491 -17.28394 -16.83740 -16.29445 -15.65364 -15.50226 -15.32838 -15.07511 -14.72226 -14.37421 -14.18522 -13.96213 -13.89902 -13.57797 -13.26079 -13.10562 -12.92623 -12.75588 -12.57662 -12.47419 -12.12435 -12.07172 -11.93462 -11.80735 -11.32433 -10.96465 -10.61927 -10.34130 -9.75359 -9.19855 -9.03406 -7.95801 -6.13248 0.21544 0.22427 1.44707 1.44937 1.52222 1.84686 2.46934 2.55403 2.60724 3.26087 3.41616 3.61840 3.80355 3.89624 4.03570 4.21375 4.25732 4.35868 4.49450 4.52708 4.55452 4.67629 4.71849 4.85470 5.00134 5.05592 5.14907 5.17911 5.26536 5.40227 5.43182 5.52113 5.52337 5.56451 5.69424 5.75520 6.12140 6.17271 6.21671 6.31191 6.45390 6.56391 6.95464 7.54239 9.02476 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030376 B = 0.003886 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.568741 B = 7203.479405 C = 7578.776873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.059 3.941 3 C -0.104 4.104 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.089 3.911 13 N -0.679 5.679 14 C 0.101 3.899 15 C -0.072 4.072 16 C -0.096 4.096 17 C -0.100 4.100 18 C -0.105 4.105 19 C 0.009 3.991 20 C 0.012 3.988 21 O -0.332 6.332 22 C 0.205 3.795 23 O -0.324 6.324 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.014 0.986 27 H 0.015 0.985 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.257 0.743 31 H 0.058 0.942 32 H 0.006 0.994 33 H 0.333 0.667 34 H 0.026 0.974 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.103 0.897 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -0.857 20.808 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 C -0.162 4.162 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.040 4.040 13 N -0.311 5.311 14 C -0.028 4.028 15 C -0.073 4.073 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.035 4.035 20 C -0.032 4.032 21 O -0.248 6.248 22 C 0.094 3.906 23 O -0.240 6.240 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.152 0.848 34 H 0.044 0.956 35 H 0.112 0.888 36 H 0.174 0.826 37 H 0.192 0.808 38 H 0.174 0.826 39 H 0.120 0.880 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.476 -0.317 20.571 20.579 hybrid contribution -0.754 -1.548 -1.232 2.118 sum -1.231 -1.866 19.338 19.467 Atomic orbital electron populations 1.21654 0.98603 0.97802 0.99625 1.18149 0.92081 0.93108 0.90803 1.21451 0.97303 0.98187 0.99233 1.21386 1.31382 1.11970 0.91819 0.93517 1.25562 0.95290 0.95628 1.01244 1.69971 1.37392 1.23621 1.23363 0.85794 0.78737 0.78697 0.79426 1.20166 1.21112 1.19914 1.21866 0.98706 0.93729 0.89649 1.60678 1.16192 1.53279 1.00907 1.20827 1.00885 0.93971 0.87087 1.19082 0.89365 1.00689 0.98195 1.21198 1.00689 0.94369 0.95231 1.21336 0.94509 0.99580 0.96364 1.20488 0.92594 0.98431 1.00859 1.20126 0.84499 1.01564 0.97307 1.19927 0.91048 0.96866 0.95386 1.87366 1.31342 1.67021 1.39114 1.26021 0.95813 0.86908 0.81829 1.87299 1.25028 1.41964 1.69752 0.95599 0.92411 0.96689 0.96599 0.93311 0.95056 0.93312 0.92379 0.97602 0.84817 0.95581 0.88807 0.82647 0.80817 0.82565 0.87954 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 7.92 71.98 0.57 -5.35 16 2 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16 3 C -0.10 -5.20 8.09 71.98 0.58 -4.61 16 4 C -0.53 -28.92 8.01 25.60 0.21 -28.72 16 5 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 6 C 0.02 1.20 5.15 84.65 0.44 1.63 16 7 N -0.90 -51.35 9.35 21.45 0.20 -51.15 16 8 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.09 3.83 4.59 86.30 0.40 4.22 16 13 N -0.68 -25.44 5.70 -517.93 -2.95 -28.39 16 14 C 0.10 3.09 5.81 85.56 0.50 3.59 16 15 C -0.07 -1.99 5.40 -19.79 -0.11 -2.10 16 16 C -0.10 -2.06 9.66 22.27 0.22 -1.85 16 17 C -0.10 -1.71 10.04 22.27 0.22 -1.48 16 18 C -0.11 -2.07 10.06 22.34 0.22 -1.84 16 19 C 0.01 0.23 7.15 22.59 0.16 0.40 16 20 C 0.01 0.36 6.84 22.59 0.15 0.51 16 21 O -0.33 -9.74 11.40 -76.11 -0.87 -10.61 16 22 C 0.21 4.19 8.89 113.37 1.01 5.20 16 23 O -0.32 -8.03 11.40 -76.06 -0.87 -8.90 16 24 H 0.03 1.16 6.57 -2.39 -0.02 1.15 16 25 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 26 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 2.68 6.07 -2.39 -0.01 2.66 16 29 H 0.03 1.45 7.60 -2.39 -0.02 1.43 16 30 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.33 13.25 6.76 -89.69 -0.61 12.65 16 34 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 2.56 8.00 -2.39 -0.02 2.55 16 36 H 0.16 2.70 8.03 -2.91 -0.02 2.68 16 37 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -64.51 325.16 2.51 -62.00 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.43 Total: 18.77 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 4.54 Total: -27.48 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -2.75 Total: -79.54 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -1.73 Total: -19.51 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -64.51 2.51 -62.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459690790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.238 kcal (2) G-P(sol) polarization free energy of solvation -64.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds