Wall clock time and date at job start Mon Mar 30 2020 01:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47352 * 2 1 4 4 C 1.53003 * 109.47308 * 239.99703 * 2 1 3 5 5 C 1.50706 * 109.46861 * 59.99981 * 4 2 1 6 6 H 1.08005 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99965 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99953 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00011 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47050 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47098 * 120.00101 * 9 7 5 12 12 H 1.48496 * 109.47049 * 239.99960 * 9 7 5 13 13 C 1.52999 * 109.46985 * 119.99828 * 2 1 3 14 14 N 1.46497 * 109.47124 * 300.00079 * 13 2 1 15 15 C 1.34780 * 119.99813 * 179.97438 * 14 13 2 16 16 O 1.21552 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.47856 * 119.99733 * 179.97438 * 15 14 13 18 18 C 1.39605 * 120.11992 * 359.97438 * 17 15 14 19 19 C 1.37963 * 119.96697 * 180.02562 * 18 17 15 20 20 C 1.38298 * 120.20542 * 359.72224 * 19 18 17 21 21 C 1.38807 * 120.23477 * 0.55088 * 20 19 18 22 22 O 1.35915 * 119.98280 * 179.72838 * 21 20 19 23 23 C 1.38493 * 120.03360 * 359.45005 * 21 20 19 24 24 H 1.08994 * 109.47263 * 300.00345 * 1 2 3 25 25 H 1.09005 * 109.46797 * 60.00162 * 1 2 3 26 26 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47290 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47299 * 300.00161 * 3 2 1 29 29 H 1.09002 * 109.47357 * 59.99384 * 3 2 1 30 30 H 1.08997 * 109.47453 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.47061 * 300.00528 * 4 2 1 32 32 H 0.97000 * 119.99695 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47403 * 179.97438 * 13 2 1 34 34 H 1.09003 * 109.46900 * 60.00244 * 13 2 1 35 35 H 0.96997 * 119.99952 * 0.02562 * 14 13 2 36 36 H 1.08000 * 120.01627 * 359.97438 * 18 17 15 37 37 H 1.07994 * 119.89925 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.88277 * 180.29920 * 20 19 18 39 39 H 0.96705 * 113.99582 * 269.72538 * 22 21 20 40 40 H 1.08006 * 120.10478 * 180.25071 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6273 -1.5510 -3.8526 9 14 1.2491 0.3993 -5.2572 10 1 0.4245 1.5663 -4.8531 11 1 2.4044 0.8661 -6.0650 12 1 0.4244 -0.5339 -6.0660 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8768 -0.4914 3.6695 16 8 2.5748 -1.4802 3.7810 17 6 1.3843 0.2060 4.8767 18 6 0.5829 1.3422 4.7515 19 6 0.1256 1.9908 5.8800 20 6 0.4538 1.5156 7.1367 21 6 1.2548 0.3900 7.2711 22 8 1.5787 -0.0693 8.5085 23 6 1.7192 -0.2688 6.1448 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 -0.7209 -1.2495 31 1 1.6766 -1.7489 -1.2492 32 1 2.8623 -1.8819 -4.7336 33 1 3.1299 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2492 35 1 0.9936 0.7578 2.3563 36 1 0.3217 1.7138 3.7716 37 1 -0.4947 2.8694 5.7818 38 1 0.0890 2.0246 8.0165 39 1 2.3944 0.3069 8.8666 40 1 2.3392 -1.1471 6.2481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489849983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:13 Heat of formation + Delta-G solvation = -94.965514 kcal Electronic energy + Delta-G solvation = -20969.048618 eV Core-core repulsion = 17747.312262 eV Total energy + Delta-G solvation = -3221.736355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44390 -40.12215 -38.66013 -37.47847 -35.32511 -34.01149 -32.19493 -30.83848 -29.09393 -27.96057 -27.74713 -25.42504 -24.18645 -23.44267 -21.63041 -20.27883 -19.32444 -18.37940 -17.90116 -17.42705 -16.90768 -16.51339 -16.49555 -16.07863 -15.96073 -15.19258 -15.04247 -14.73207 -14.68002 -14.31668 -13.94168 -13.86411 -13.23806 -13.17810 -12.89019 -12.69530 -12.68603 -12.59303 -12.34430 -12.23135 -11.94971 -11.76053 -11.54772 -11.23517 -10.92328 -10.81329 -10.51897 -10.27320 -9.97328 -9.71798 -8.13648 -6.21450 -0.24213 0.24014 1.42498 1.43604 1.55243 1.76166 2.07849 2.45265 2.73469 3.21190 3.24669 3.63262 3.87774 3.95922 4.06881 4.10049 4.16963 4.22290 4.44716 4.65168 4.69958 4.70344 4.80607 4.91401 4.95804 5.08434 5.12830 5.22999 5.31666 5.33532 5.36070 5.44591 5.50904 5.53247 5.56997 5.74683 5.80292 5.90403 6.30201 6.49354 6.81072 6.94129 7.13409 7.46517 8.99210 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043054 B = 0.003173 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.190643 B = 8821.026659 C = 9272.285974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.139 3.861 14 N -0.699 5.699 15 C 0.548 3.452 16 O -0.588 6.588 17 C -0.131 4.131 18 C -0.093 4.093 19 C -0.100 4.100 20 C -0.115 4.115 21 C 0.094 3.906 22 O -0.508 6.508 23 C -0.110 4.110 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.071 0.929 30 H -0.014 1.014 31 H -0.015 1.015 32 H 0.259 0.741 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.414 0.586 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.160 0.840 39 H 0.412 0.588 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.444 12.205 21.889 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.178 1.178 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.015 3.985 14 N -0.352 5.352 15 C 0.336 3.664 16 O -0.470 6.470 17 C -0.135 4.135 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.134 4.134 21 C 0.049 3.951 22 O -0.321 6.321 23 C -0.130 4.130 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.253 0.747 36 H 0.169 0.831 37 H 0.189 0.811 38 H 0.178 0.822 39 H 0.271 0.729 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.390 11.094 21.757 25.244 hybrid contribution 0.626 -0.084 -1.241 1.392 sum -5.764 11.010 20.516 23.987 Atomic orbital electron populations 1.21713 0.93434 1.01052 1.01826 1.20719 0.96837 0.96421 0.92535 1.21711 0.99994 0.94450 1.01835 1.18981 0.94306 0.94209 0.92358 1.21629 1.30295 1.12052 0.90950 0.90698 1.25965 0.95695 0.95875 1.02791 1.70135 1.38883 1.25076 1.24017 0.85482 0.78026 0.78852 0.79198 1.17825 1.21145 1.21172 1.21293 0.97989 0.95488 0.83714 1.45856 1.52774 1.32008 1.04539 1.18796 0.79679 0.83588 0.84289 1.90748 1.40393 1.28362 1.87508 1.19718 1.03030 0.98742 0.91966 1.21649 0.95101 0.93101 1.01326 1.21426 0.99155 1.00615 0.90521 1.21975 0.97170 0.94314 0.99904 1.18414 0.98494 0.94003 0.84146 1.84797 1.48550 1.70025 1.28764 1.21544 0.99586 1.00261 0.91604 0.91070 0.92254 0.94488 0.94403 0.92281 0.91031 0.99573 0.99637 0.93213 0.93335 0.93473 0.74677 0.83090 0.81102 0.82210 0.72870 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 2 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.07 7.65 25.60 0.20 -26.87 16 6 H 0.08 3.68 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 8 N -0.94 -57.14 13.29 21.45 0.28 -56.85 16 9 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 10 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.14 5.02 4.56 86.38 0.39 5.41 16 14 N -0.70 -19.72 4.91 -465.96 -2.29 -22.00 16 15 C 0.55 17.16 7.77 86.79 0.67 17.83 16 16 O -0.59 -23.90 16.35 -3.88 -0.06 -23.96 16 17 C -0.13 -3.12 5.87 -20.10 -0.12 -3.24 16 18 C -0.09 -1.46 9.54 22.53 0.21 -1.24 16 19 C -0.10 -1.10 10.03 22.22 0.22 -0.87 16 20 C -0.12 -1.43 9.98 22.42 0.22 -1.21 16 21 C 0.09 1.68 6.70 22.47 0.15 1.83 16 22 O -0.51 -7.93 13.50 -92.59 -1.25 -9.18 16 23 C -0.11 -2.62 9.53 22.63 0.22 -2.40 16 24 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 25 H 0.06 2.06 6.62 -2.38 -0.02 2.04 16 26 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 2.04 6.62 -2.38 -0.02 2.02 16 29 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 30 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H -0.01 -0.84 8.14 -2.39 -0.02 -0.85 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.41 8.70 4.19 -92.71 -0.39 8.31 16 36 H 0.15 1.64 6.40 -2.91 -0.02 1.62 16 37 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 39 H 0.41 2.32 9.06 -74.05 -0.67 1.64 16 40 H 0.12 3.26 7.65 -2.91 -0.02 3.24 16 Total: -1.00 -74.87 329.88 2.60 -72.26 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.00 Total: 12.31 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 3.89 Total: -17.84 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.00 Total: -78.85 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.31 Total: -33.14 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.87 2.60 -72.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489849983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.702 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds