Wall clock time and date at job start Mon Mar 30 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47270 * 2 1 4 4 H 1.09003 * 109.47092 * 304.99755 * 3 2 1 5 5 C 1.50697 * 109.47017 * 185.00238 * 3 2 1 6 6 C 1.38161 * 120.03233 * 343.15732 * 5 3 2 7 7 C 1.38247 * 120.06144 * 180.02562 * 6 5 3 8 8 C 1.38284 * 120.10665 * 359.97438 * 7 6 5 9 9 C 1.38125 * 120.05978 * 0.02562 * 8 7 6 10 10 C 1.38714 * 120.02719 * 162.88055 * 5 3 2 11 11 O 1.35896 * 120.05747 * 359.97438 * 10 5 3 12 12 C 1.42895 * 117.00494 * 180.02562 * 11 10 5 13 13 N 1.46491 * 109.47477 * 65.00012 * 3 2 1 14 14 C 1.46509 * 119.99860 * 61.16226 * 13 3 2 15 15 C 1.34778 * 120.00384 * 241.16555 * 13 3 2 16 16 O 1.21685 * 119.99609 * 0.02562 * 15 13 3 17 17 C 1.46374 * 119.99980 * 179.97438 * 15 13 3 18 18 H 1.07998 * 120.00322 * 359.97438 * 17 15 13 19 19 C 1.40052 * 119.99771 * 180.02562 * 17 15 13 20 20 N 1.30671 * 120.00148 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00154 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46794 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47040 * 119.99762 * 21 19 17 24 24 H 1.48496 * 109.47268 * 239.99965 * 21 19 17 25 25 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46687 * 300.00475 * 1 2 3 27 27 H 1.09001 * 109.46931 * 59.99722 * 1 2 3 28 28 H 1.08999 * 109.47038 * 240.00072 * 2 1 3 29 29 H 1.08999 * 109.47401 * 120.00053 * 2 1 3 30 30 H 1.08002 * 119.96934 * 359.97438 * 6 5 3 31 31 H 1.08001 * 119.94457 * 179.97438 * 7 6 5 32 32 H 1.08006 * 119.96835 * 180.02562 * 8 7 6 33 33 H 1.07999 * 120.02792 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47202 * 300.00484 * 12 11 10 35 35 H 1.09006 * 109.47206 * 60.00248 * 12 11 10 36 36 H 1.09000 * 109.47478 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.46802 * 92.07129 * 14 13 3 38 38 H 1.09000 * 109.46966 * 212.07306 * 14 13 3 39 39 H 1.08997 * 109.47230 * 332.07020 * 14 13 3 40 40 H 0.96998 * 119.99988 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 6 4.2581 0.2906 0.1312 7 6 5.6360 0.2917 0.0183 8 6 6.3008 1.4467 -0.3507 9 6 5.5895 2.6026 -0.6069 10 6 4.2061 2.6026 -0.4998 11 8 3.5035 3.7370 -0.7573 12 6 4.2532 4.8918 -1.1397 13 7 1.6526 2.0975 1.2517 14 6 2.1349 1.5740 2.5322 15 6 0.8523 3.1817 1.2254 16 8 0.4513 3.6161 0.1618 17 6 0.4648 3.8358 2.4762 18 1 0.8197 3.4494 3.4202 19 6 -0.3672 4.9621 2.4488 20 7 -0.7979 5.4287 1.3068 21 14 -0.8625 5.7965 4.0451 22 1 -0.2471 5.0788 5.1903 23 1 -0.3924 7.2051 4.0339 24 1 -2.3411 5.7691 4.1799 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7412 -0.6126 0.4200 31 1 6.1940 -0.6111 0.2186 32 1 7.3773 1.4449 -0.4387 33 1 6.1093 3.5045 -0.8946 34 1 4.9496 5.1531 -0.3431 35 1 4.8091 4.6781 -2.0527 36 1 3.5728 5.7251 -1.3149 37 1 3.0616 2.0788 2.8052 38 1 1.3844 1.7505 3.3028 39 1 2.3175 0.5033 2.4415 40 1 -1.3744 6.2085 1.2879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490939351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:32 Heat of formation + Delta-G solvation = -44.480175 kcal Electronic energy + Delta-G solvation = -22652.936041 eV Core-core repulsion = 19433.388894 eV Total energy + Delta-G solvation = -3219.547147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01522 -37.88831 -36.87097 -34.83170 -32.36314 -31.95569 -30.65959 -29.79048 -27.06952 -26.62008 -25.76086 -24.53694 -22.45708 -21.36439 -20.45297 -18.58531 -17.62426 -16.47902 -15.74343 -15.60211 -15.43968 -15.22605 -14.69236 -14.18655 -14.04817 -13.81483 -13.42986 -13.13387 -12.66221 -12.35747 -12.32790 -11.84013 -11.50407 -11.42777 -11.35966 -11.23547 -11.12332 -11.10912 -10.89533 -10.73572 -10.50777 -10.24781 -10.16856 -10.03685 -9.97867 -8.78112 -8.62941 -7.82612 -7.35728 -7.02778 -6.09345 -4.53698 1.59763 1.77232 3.15831 3.24346 3.28365 3.78453 4.00404 4.18828 4.67228 4.85019 4.98343 5.07968 5.26159 5.36573 5.46001 5.49639 5.65544 5.66022 5.73524 5.89704 5.92366 5.94663 5.96201 6.11327 6.27412 6.31574 6.35226 6.50409 6.56642 6.63321 6.67544 6.75062 6.78808 6.93688 6.94697 7.11636 7.52836 7.79693 7.88843 8.26713 8.49631 9.12082 9.59218 10.69249 10.91269 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.006521 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.744966 B = 4292.749562 C = 4914.022331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.192 3.808 4 H 0.104 0.896 5 C -0.114 4.114 6 C -0.080 4.080 7 C -0.168 4.168 8 C -0.089 4.089 9 C -0.219 4.219 10 C 0.147 3.853 11 O -0.283 6.283 12 C 0.032 3.968 13 N -0.629 5.629 14 C 0.105 3.895 15 C 0.565 3.435 16 O -0.567 6.567 17 C -0.543 4.543 18 H 0.069 0.931 19 C 0.089 3.911 20 N -0.768 5.768 21 Si 0.901 3.099 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.277 1.277 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.899 -7.619 -1.812 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.088 3.912 4 H 0.122 0.878 5 C -0.116 4.116 6 C -0.099 4.099 7 C -0.186 4.186 8 C -0.108 4.108 9 C -0.237 4.237 10 C 0.100 3.900 11 O -0.194 6.194 12 C -0.064 4.064 13 N -0.367 5.367 14 C -0.040 4.040 15 C 0.370 3.630 16 O -0.449 6.449 17 C -0.580 4.580 18 H 0.087 0.913 19 C -0.130 4.130 20 N -0.397 5.397 21 Si 0.726 3.274 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.316 -7.165 -2.488 12.804 hybrid contribution 0.295 0.589 0.923 1.134 sum 10.611 -6.576 -1.564 12.581 Atomic orbital electron populations 1.21638 0.95301 0.99941 1.03119 1.21934 0.96826 0.97226 1.00825 1.19372 0.87480 0.92696 0.91700 0.87848 1.19879 0.97623 0.91247 1.02875 1.20968 0.93628 0.97297 0.98001 1.20924 0.94458 0.98187 1.05041 1.20795 0.99083 0.92512 0.98394 1.21193 0.93082 0.99867 1.09593 1.19031 0.89865 0.87150 0.93922 1.86432 1.34213 1.17084 1.81668 1.22989 0.97409 0.87486 0.98502 1.47927 1.53541 1.32366 1.02846 1.21292 0.98561 0.96356 0.87763 1.18129 0.76817 0.77602 0.90457 1.90581 1.57289 1.64469 1.32552 1.21040 1.31785 1.12815 0.92346 0.91276 1.25689 0.94455 0.96356 0.96509 1.70040 1.25208 1.19064 1.25415 0.86430 0.78640 0.79384 0.82973 1.18857 1.20327 1.20257 0.93954 0.91858 0.92845 0.92213 0.92206 0.85468 0.86558 0.86583 0.86010 0.93286 0.93508 0.88255 0.95593 0.91424 0.94088 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.80 37.16 0.36 -2.15 16 2 C -0.13 -2.15 4.12 -26.73 -0.11 -2.26 16 3 C 0.19 3.92 1.90 -69.09 -0.13 3.79 16 4 H 0.10 2.50 6.70 -51.93 -0.35 2.15 16 5 C -0.11 -2.08 4.82 -104.48 -0.50 -2.58 16 6 C -0.08 -1.20 9.04 -39.61 -0.36 -1.56 16 7 C -0.17 -2.22 10.04 -39.56 -0.40 -2.62 16 8 C -0.09 -1.19 10.04 -39.61 -0.40 -1.59 16 9 C -0.22 -3.34 9.04 -39.43 -0.36 -3.70 16 10 C 0.15 2.75 6.66 -39.21 -0.26 2.49 16 11 O -0.28 -5.92 9.79 -19.41 -0.19 -6.11 16 12 C 0.03 0.50 9.81 101.05 0.99 1.49 16 13 N -0.63 -14.47 2.21 -176.93 -0.39 -14.86 16 14 C 0.10 2.06 9.41 59.85 0.56 2.62 16 15 C 0.56 16.00 7.61 -12.99 -0.10 15.90 16 16 O -0.57 -18.09 14.35 5.20 0.07 -18.01 16 17 C -0.54 -15.40 8.73 -35.63 -0.31 -15.71 16 18 H 0.07 1.83 6.04 -52.49 -0.32 1.51 16 19 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 20 N -0.77 -23.04 11.83 55.55 0.66 -22.38 16 21 Si 0.90 20.38 29.56 -169.99 -5.02 15.35 16 22 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.28 7.75 -51.93 -0.40 0.88 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.87 7.99 -51.93 -0.41 0.46 16 29 H 0.06 0.90 5.51 -51.93 -0.29 0.62 16 30 H 0.13 1.65 6.08 -52.49 -0.32 1.33 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.12 1.61 6.30 -52.49 -0.33 1.28 16 34 H 0.05 0.70 7.65 -51.93 -0.40 0.30 16 35 H 0.05 0.60 7.68 -51.93 -0.40 0.21 16 36 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.35 6.21 -51.93 -0.32 1.03 16 39 H 0.04 0.67 6.41 -51.93 -0.33 0.34 16 40 H 0.26 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -34.31 326.87 -6.59 -40.90 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.54 Total: 3.66 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.10 Total: -3.48 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.27 Total: -37.24 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.12 Total: -24.13 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.31 -6.59 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490939351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.582 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds