Wall clock time and date at job start Mon Mar 30 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47270 * 2 1 4 4 H 1.09003 * 109.47092 * 304.99755 * 3 2 1 5 5 C 1.50697 * 109.47017 * 185.00238 * 3 2 1 6 6 C 1.38161 * 120.03233 * 343.15732 * 5 3 2 7 7 C 1.38247 * 120.06144 * 180.02562 * 6 5 3 8 8 C 1.38284 * 120.10665 * 359.97438 * 7 6 5 9 9 C 1.38125 * 120.05978 * 0.02562 * 8 7 6 10 10 C 1.38714 * 120.02719 * 162.88055 * 5 3 2 11 11 O 1.35896 * 120.05747 * 359.97438 * 10 5 3 12 12 C 1.42895 * 117.00494 * 180.02562 * 11 10 5 13 13 N 1.46491 * 109.47477 * 65.00012 * 3 2 1 14 14 C 1.46509 * 119.99860 * 61.16226 * 13 3 2 15 15 C 1.34778 * 120.00384 * 241.16555 * 13 3 2 16 16 O 1.21685 * 119.99609 * 0.02562 * 15 13 3 17 17 C 1.46374 * 119.99980 * 179.97438 * 15 13 3 18 18 H 1.07998 * 120.00322 * 359.97438 * 17 15 13 19 19 C 1.40052 * 119.99771 * 180.02562 * 17 15 13 20 20 N 1.30671 * 120.00148 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00154 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46794 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47040 * 119.99762 * 21 19 17 24 24 H 1.48496 * 109.47268 * 239.99965 * 21 19 17 25 25 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46687 * 300.00475 * 1 2 3 27 27 H 1.09001 * 109.46931 * 59.99722 * 1 2 3 28 28 H 1.08999 * 109.47038 * 240.00072 * 2 1 3 29 29 H 1.08999 * 109.47401 * 120.00053 * 2 1 3 30 30 H 1.08002 * 119.96934 * 359.97438 * 6 5 3 31 31 H 1.08001 * 119.94457 * 179.97438 * 7 6 5 32 32 H 1.08006 * 119.96835 * 180.02562 * 8 7 6 33 33 H 1.07999 * 120.02792 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47202 * 300.00484 * 12 11 10 35 35 H 1.09006 * 109.47206 * 60.00248 * 12 11 10 36 36 H 1.09000 * 109.47478 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.46802 * 92.07129 * 14 13 3 38 38 H 1.09000 * 109.46966 * 212.07306 * 14 13 3 39 39 H 1.08997 * 109.47230 * 332.07020 * 14 13 3 40 40 H 0.96998 * 119.99988 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 6 4.2581 0.2906 0.1312 7 6 5.6360 0.2917 0.0183 8 6 6.3008 1.4467 -0.3507 9 6 5.5895 2.6026 -0.6069 10 6 4.2061 2.6026 -0.4998 11 8 3.5035 3.7370 -0.7573 12 6 4.2532 4.8918 -1.1397 13 7 1.6526 2.0975 1.2517 14 6 2.1349 1.5740 2.5322 15 6 0.8523 3.1817 1.2254 16 8 0.4513 3.6161 0.1618 17 6 0.4648 3.8358 2.4762 18 1 0.8197 3.4494 3.4202 19 6 -0.3672 4.9621 2.4488 20 7 -0.7979 5.4287 1.3068 21 14 -0.8625 5.7965 4.0451 22 1 -0.2471 5.0788 5.1903 23 1 -0.3924 7.2051 4.0339 24 1 -2.3411 5.7691 4.1799 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7412 -0.6126 0.4200 31 1 6.1940 -0.6111 0.2186 32 1 7.3773 1.4449 -0.4387 33 1 6.1093 3.5045 -0.8946 34 1 4.9496 5.1531 -0.3431 35 1 4.8091 4.6781 -2.0527 36 1 3.5728 5.7251 -1.3149 37 1 3.0616 2.0788 2.8052 38 1 1.3844 1.7505 3.3028 39 1 2.3175 0.5033 2.4415 40 1 -1.3744 6.2085 1.2879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490939351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:32 Heat of formation + Delta-G solvation = -66.788022 kcal Electronic energy + Delta-G solvation = -22653.903381 eV Core-core repulsion = 19433.388894 eV Total energy + Delta-G solvation = -3220.514488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33274 -39.63094 -38.28114 -36.59327 -34.52397 -33.66447 -31.92449 -30.96811 -28.68732 -28.14570 -27.54920 -26.15564 -23.73873 -22.62553 -22.14302 -20.24098 -18.89334 -18.41444 -17.69171 -17.02303 -16.77024 -16.66038 -16.31000 -15.74896 -15.57559 -15.18254 -14.79073 -14.56443 -14.28492 -14.06462 -13.62873 -13.31867 -13.23265 -13.06413 -12.99080 -12.77761 -12.75364 -12.57488 -12.38802 -12.15863 -12.02896 -11.95048 -11.84300 -11.52950 -11.47393 -10.89702 -9.87884 -9.55511 -9.03277 -8.85640 -8.20323 -6.75534 0.43272 0.59834 1.37778 1.38134 1.54892 2.25505 2.53336 2.57760 2.78660 3.22055 3.70201 3.74524 3.96061 4.12219 4.21907 4.27201 4.28881 4.29562 4.44899 4.54494 4.56226 4.62243 4.69812 4.75767 4.84461 4.87796 5.00418 5.05700 5.08691 5.18285 5.28535 5.40530 5.43757 5.52899 5.59719 5.65066 5.92281 6.01463 6.22906 6.57315 6.64287 6.95022 7.58810 8.60507 8.80640 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.006521 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.744966 B = 4292.749562 C = 4914.022331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.194 3.806 4 H 0.048 0.952 5 C -0.143 4.143 6 C -0.076 4.076 7 C -0.157 4.157 8 C -0.082 4.082 9 C -0.222 4.222 10 C 0.110 3.890 11 O -0.334 6.334 12 C 0.029 3.971 13 N -0.628 5.628 14 C 0.107 3.893 15 C 0.552 3.448 16 O -0.619 6.619 17 C -0.572 4.572 18 H 0.084 0.916 19 C 0.031 3.969 20 N -0.822 5.822 21 Si 0.988 3.012 22 H -0.248 1.248 23 H -0.271 1.271 24 H -0.269 1.269 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.025 0.975 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.529 -10.021 -0.016 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C 0.090 3.910 4 H 0.066 0.934 5 C -0.145 4.145 6 C -0.094 4.094 7 C -0.175 4.175 8 C -0.100 4.100 9 C -0.240 4.240 10 C 0.065 3.935 11 O -0.247 6.247 12 C -0.066 4.066 13 N -0.364 5.364 14 C -0.037 4.037 15 C 0.357 3.643 16 O -0.505 6.505 17 C -0.608 4.608 18 H 0.102 0.898 19 C -0.183 4.183 20 N -0.452 5.452 21 Si 0.808 3.192 22 H -0.171 1.171 23 H -0.196 1.196 24 H -0.194 1.194 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.155 0.845 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.994 -9.624 -0.679 16.184 hybrid contribution -0.400 1.249 0.285 1.342 sum 12.594 -8.375 -0.394 15.130 Atomic orbital electron populations 1.21597 0.96491 1.01325 1.00158 1.21895 0.95629 0.94927 1.03273 1.19345 0.89501 0.93730 0.88424 0.93418 1.19839 0.96096 0.92895 1.05654 1.21227 0.94610 0.96540 0.97040 1.21394 0.93785 0.99522 1.02836 1.21291 1.00926 0.91540 0.96261 1.21446 0.91711 1.01627 1.09260 1.19457 0.91443 0.86731 0.95919 1.86359 1.36837 1.18876 1.82675 1.23103 0.97195 0.86152 1.00159 1.47710 1.52311 1.31201 1.05153 1.21384 0.97937 0.98480 0.85873 1.18407 0.77242 0.78738 0.89905 1.90532 1.59421 1.66431 1.34093 1.21536 1.32539 1.13729 0.93046 0.89800 1.26883 0.93832 0.96791 1.00834 1.70221 1.26296 1.19964 1.28721 0.85117 0.78477 0.78022 0.77575 1.17129 1.19587 1.19351 0.90200 0.95234 0.95461 0.89562 0.89497 0.83128 0.82598 0.82865 0.84483 0.92051 0.90766 0.89620 0.95680 0.92216 0.90228 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.80 71.98 0.71 -4.23 16 2 C -0.12 -3.81 4.12 30.60 0.13 -3.68 16 3 C 0.19 8.18 1.90 44.25 0.08 8.26 16 4 H 0.05 2.52 6.70 -2.39 -0.02 2.51 16 5 C -0.14 -5.15 4.82 -19.77 -0.10 -5.25 16 6 C -0.08 -2.00 9.04 22.25 0.20 -1.80 16 7 C -0.16 -3.37 10.04 22.28 0.22 -3.15 16 8 C -0.08 -1.84 10.04 22.25 0.22 -1.62 16 9 C -0.22 -6.39 9.04 22.37 0.20 -6.19 16 10 C 0.11 4.18 6.66 22.51 0.15 4.33 16 11 O -0.33 -14.99 9.79 -92.38 -0.90 -15.89 16 12 C 0.03 0.96 9.81 113.37 1.11 2.07 16 13 N -0.63 -29.88 2.21 -831.91 -1.83 -31.71 16 14 C 0.11 4.11 9.41 127.77 1.20 5.31 16 15 C 0.55 33.17 7.61 86.36 0.66 33.83 16 16 O -0.62 -42.71 14.35 -4.30 -0.06 -42.77 16 17 C -0.57 -33.65 8.73 24.83 0.22 -33.43 16 18 H 0.08 4.50 6.04 -2.91 -0.02 4.48 16 19 C 0.03 1.79 5.50 85.31 0.47 2.26 16 20 N -0.82 -51.94 11.83 21.84 0.26 -51.68 16 21 Si 0.99 42.65 29.56 68.60 2.03 44.68 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.03 1.22 7.75 -2.38 -0.02 1.20 16 27 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 2.33 7.99 -2.39 -0.02 2.31 16 29 H 0.09 2.31 5.51 -2.39 -0.01 2.30 16 30 H 0.15 3.16 6.08 -2.91 -0.02 3.14 16 31 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.14 3.37 6.30 -2.91 -0.02 3.35 16 34 H 0.06 1.81 7.65 -2.39 -0.02 1.79 16 35 H 0.07 1.97 7.68 -2.38 -0.02 1.95 16 36 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 2.37 6.21 -2.39 -0.01 2.36 16 39 H 0.08 2.41 6.41 -2.39 -0.02 2.39 16 40 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -82.83 326.87 6.01 -76.83 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 1.04 Total: 23.83 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.48 Total: -3.28 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.58 Total: -83.39 kcal Atomic # 8 Polarization: -57.69 SS G_CDS: -0.97 Total: -58.66 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -82.83 6.01 -76.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490939351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.038 kcal (2) G-P(sol) polarization free energy of solvation -82.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds