Wall clock time and date at job start Mon Mar 30 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47049 * 2 1 4 4 H 1.09003 * 109.46779 * 54.99635 * 3 2 1 5 5 C 1.50692 * 109.47040 * 174.99826 * 3 2 1 6 6 C 1.38168 * 120.02930 * 16.36801 * 5 3 2 7 7 C 1.38240 * 120.05625 * 180.02562 * 6 5 3 8 8 C 1.38287 * 120.11354 * 0.02562 * 7 6 5 9 9 C 1.38126 * 120.05712 * 359.74402 * 8 7 6 10 10 C 1.38711 * 120.03094 * 196.38808 * 5 3 2 11 11 O 1.35904 * 120.05206 * 359.94901 * 10 5 3 12 12 C 1.42899 * 116.99887 * 179.97438 * 11 10 5 13 13 N 1.46503 * 109.47002 * 295.00117 * 3 2 1 14 14 C 1.46496 * 119.99873 * 304.48855 * 13 3 2 15 15 C 1.34775 * 120.00155 * 124.49462 * 13 3 2 16 16 O 1.21692 * 119.99998 * 359.97438 * 15 13 3 17 17 C 1.46371 * 120.00038 * 179.97438 * 15 13 3 18 18 H 1.07997 * 120.00108 * 359.97438 * 17 15 13 19 19 C 1.40053 * 119.99737 * 179.97438 * 17 15 13 20 20 N 1.30671 * 120.00335 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99544 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47313 * 90.00205 * 21 19 17 23 23 H 1.48506 * 109.46523 * 210.00150 * 21 19 17 24 24 H 1.48494 * 109.46971 * 329.99834 * 21 19 17 25 25 H 1.08992 * 109.47160 * 299.99903 * 1 2 3 26 26 H 1.08999 * 109.46775 * 59.99905 * 1 2 3 27 27 H 1.09003 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47074 * 239.99632 * 2 1 3 29 29 H 1.08999 * 109.46775 * 120.00094 * 2 1 3 30 30 H 1.08002 * 119.97065 * 0.02562 * 6 5 3 31 31 H 1.08004 * 119.94666 * 179.97438 * 7 6 5 32 32 H 1.07999 * 119.97478 * 179.97438 * 8 7 6 33 33 H 1.07992 * 120.03186 * 180.27379 * 9 8 7 34 34 H 1.09000 * 109.47035 * 60.00956 * 12 11 10 35 35 H 1.09000 * 109.47366 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47582 * 300.00531 * 12 11 10 37 37 H 1.09002 * 109.47202 * 95.20316 * 14 13 3 38 38 H 1.08995 * 109.47316 * 215.20438 * 14 13 3 39 39 H 1.09005 * 109.47359 * 335.20583 * 14 13 3 40 40 H 0.97000 * 120.00131 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 6 4.2573 0.2881 -0.1218 7 6 5.6350 0.2890 -0.0078 8 6 6.3006 1.4463 0.3527 9 6 5.5905 2.6060 0.5947 10 6 4.2073 2.6066 0.4850 11 8 3.5059 3.7453 0.7265 12 6 4.2568 4.9041 1.0944 13 7 1.6524 2.0975 -1.2518 14 6 2.0310 1.5042 -2.5367 15 6 0.9477 3.2459 -1.2214 16 8 0.6329 3.7385 -0.1541 17 6 0.5609 3.9005 -2.4721 18 1 0.8406 3.4636 -3.4193 19 6 -0.1719 5.0936 -2.4405 20 7 -0.5099 5.6226 -1.2945 21 14 -0.6661 5.9287 -4.0368 22 1 -1.9902 5.4176 -4.4735 23 1 -0.7478 7.3960 -3.8230 24 1 0.3469 5.6365 -5.0825 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7398 -0.6172 -0.4030 31 1 6.1925 -0.6159 -0.1998 32 1 7.3770 1.4443 0.4415 33 1 6.1110 3.5107 0.8719 34 1 4.9544 5.1539 0.2949 35 1 3.5774 5.7404 1.2585 36 1 4.8115 4.7019 2.0106 37 1 1.2102 0.8918 -2.9100 38 1 2.2480 2.2966 -3.2529 39 1 2.9165 0.8826 -2.4031 40 1 -1.0171 6.4492 -1.2726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490939362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:35 Heat of formation + Delta-G solvation = -45.294611 kcal Electronic energy + Delta-G solvation = -22691.883872 eV Core-core repulsion = 19472.301408 eV Total energy + Delta-G solvation = -3219.582463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99057 -37.85669 -36.83973 -34.83616 -32.35610 -31.92800 -30.66097 -29.76644 -27.03784 -26.60385 -25.76949 -24.50715 -22.43538 -21.34042 -20.45127 -18.58639 -17.59117 -16.46937 -15.71577 -15.57943 -15.40507 -15.18318 -14.64705 -14.17689 -14.07848 -13.80442 -13.40540 -13.12508 -12.68594 -12.32446 -12.29554 -11.82986 -11.45919 -11.38858 -11.36612 -11.23205 -11.13331 -11.10565 -10.86769 -10.69111 -10.53579 -10.24759 -10.19199 -10.04297 -10.00755 -8.76648 -8.60421 -7.79831 -7.33954 -7.02087 -6.08403 -4.52820 1.61370 1.79507 3.17322 3.24344 3.27275 3.83390 4.02198 4.19430 4.68243 4.85215 5.00206 5.10069 5.27249 5.39931 5.46995 5.54458 5.65726 5.66635 5.74147 5.93945 5.95084 5.95988 5.97374 6.15415 6.26365 6.30774 6.31005 6.48366 6.54369 6.64264 6.66888 6.77097 6.80856 6.90147 6.93977 7.13802 7.53097 7.80443 7.93570 8.27203 8.50320 9.12737 9.60225 10.70162 10.92705 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.006667 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.685337 B = 4198.954984 C = 4864.922396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.193 3.807 4 H 0.103 0.897 5 C -0.116 4.116 6 C -0.081 4.081 7 C -0.169 4.169 8 C -0.089 4.089 9 C -0.219 4.219 10 C 0.148 3.852 11 O -0.277 6.277 12 C 0.032 3.968 13 N -0.630 5.630 14 C 0.105 3.895 15 C 0.564 3.436 16 O -0.565 6.565 17 C -0.543 4.543 18 H 0.068 0.932 19 C 0.089 3.911 20 N -0.768 5.768 21 Si 0.901 3.099 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.266 1.266 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 -7.957 1.817 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.088 3.912 4 H 0.121 0.879 5 C -0.118 4.118 6 C -0.100 4.100 7 C -0.188 4.188 8 C -0.108 4.108 9 C -0.238 4.238 10 C 0.101 3.899 11 O -0.188 6.188 12 C -0.063 4.063 13 N -0.367 5.367 14 C -0.040 4.040 15 C 0.369 3.631 16 O -0.446 6.446 17 C -0.580 4.580 18 H 0.086 0.914 19 C -0.130 4.130 20 N -0.397 5.397 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.191 1.191 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.777 -7.452 2.498 12.545 hybrid contribution 0.247 0.543 -0.952 1.123 sum 10.024 -6.909 1.546 12.273 Atomic orbital electron populations 1.21646 0.95387 1.00020 1.03002 1.21921 0.96737 0.97099 1.00904 1.19373 0.87509 0.92651 0.91675 0.87904 1.19902 0.97711 0.91173 1.03037 1.20974 0.93642 0.97288 0.98098 1.20916 0.94467 0.98152 1.05215 1.20794 0.99064 0.92495 0.98406 1.21200 0.93141 0.99777 1.09710 1.19059 0.89868 0.87221 0.93725 1.86483 1.33954 1.16410 1.81988 1.22979 0.97354 0.87520 0.98463 1.47942 1.59398 1.26816 1.02584 1.21269 0.97447 0.97752 0.87490 1.18115 0.76709 0.77728 0.90507 1.90584 1.57834 1.63924 1.32230 1.21000 1.36748 1.08127 0.92140 0.91392 1.25679 0.94200 0.96616 0.96474 1.70029 1.28244 1.16197 1.25276 0.86491 0.79440 0.78543 0.82967 1.19838 1.20609 1.19057 0.92898 0.91887 0.93884 0.92219 0.92183 0.85486 0.86600 0.86618 0.86024 0.93373 0.88228 0.93634 0.95156 0.91922 0.94069 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.80 37.16 0.36 -2.10 16 2 C -0.13 -2.10 4.04 -26.73 -0.11 -2.21 16 3 C 0.19 3.92 1.87 -69.08 -0.13 3.79 16 4 H 0.10 2.48 6.73 -51.93 -0.35 2.13 16 5 C -0.12 -2.13 4.73 -104.48 -0.49 -2.62 16 6 C -0.08 -1.22 8.41 -39.61 -0.33 -1.55 16 7 C -0.17 -2.26 10.04 -39.56 -0.40 -2.66 16 8 C -0.09 -1.21 10.04 -39.60 -0.40 -1.61 16 9 C -0.22 -3.41 9.04 -39.43 -0.36 -3.77 16 10 C 0.15 2.80 6.66 -39.22 -0.26 2.54 16 11 O -0.28 -5.91 9.64 -19.44 -0.19 -6.10 16 12 C 0.03 0.53 9.81 101.05 0.99 1.52 16 13 N -0.63 -14.44 2.20 -176.93 -0.39 -14.83 16 14 C 0.11 2.05 8.83 59.84 0.53 2.58 16 15 C 0.56 15.95 7.61 -12.99 -0.10 15.85 16 16 O -0.56 -17.88 14.18 5.20 0.07 -17.80 16 17 C -0.54 -15.40 8.73 -35.63 -0.31 -15.71 16 18 H 0.07 1.79 6.11 -52.49 -0.32 1.47 16 19 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 20 N -0.77 -22.98 11.83 55.55 0.66 -22.33 16 21 Si 0.90 20.39 29.56 -169.99 -5.02 15.36 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 1.24 7.75 -51.93 -0.40 0.84 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.89 6.27 -51.93 -0.33 0.57 16 29 H 0.06 0.87 7.97 -51.93 -0.41 0.46 16 30 H 0.13 1.65 6.08 -52.49 -0.32 1.33 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.64 6.30 -52.49 -0.33 1.31 16 34 H 0.05 0.71 7.65 -51.93 -0.40 0.31 16 35 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 36 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 1.28 6.40 -51.93 -0.33 0.95 16 39 H 0.04 0.70 6.79 -51.93 -0.35 0.35 16 40 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -34.07 326.55 -6.66 -40.73 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.61 Total: 3.58 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.10 Total: -3.54 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.27 Total: -37.16 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.11 Total: -23.90 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.07 -6.66 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490939362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.561 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds