Wall clock time and date at job start Mon Mar 30 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47049 * 2 1 4 4 H 1.09003 * 109.46779 * 54.99635 * 3 2 1 5 5 C 1.50692 * 109.47040 * 174.99826 * 3 2 1 6 6 C 1.38168 * 120.02930 * 16.36801 * 5 3 2 7 7 C 1.38240 * 120.05625 * 180.02562 * 6 5 3 8 8 C 1.38287 * 120.11354 * 0.02562 * 7 6 5 9 9 C 1.38126 * 120.05712 * 359.74402 * 8 7 6 10 10 C 1.38711 * 120.03094 * 196.38808 * 5 3 2 11 11 O 1.35904 * 120.05206 * 359.94901 * 10 5 3 12 12 C 1.42899 * 116.99887 * 179.97438 * 11 10 5 13 13 N 1.46503 * 109.47002 * 295.00117 * 3 2 1 14 14 C 1.46496 * 119.99873 * 304.48855 * 13 3 2 15 15 C 1.34775 * 120.00155 * 124.49462 * 13 3 2 16 16 O 1.21692 * 119.99998 * 359.97438 * 15 13 3 17 17 C 1.46371 * 120.00038 * 179.97438 * 15 13 3 18 18 H 1.07997 * 120.00108 * 359.97438 * 17 15 13 19 19 C 1.40053 * 119.99737 * 179.97438 * 17 15 13 20 20 N 1.30671 * 120.00335 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99544 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47313 * 90.00205 * 21 19 17 23 23 H 1.48506 * 109.46523 * 210.00150 * 21 19 17 24 24 H 1.48494 * 109.46971 * 329.99834 * 21 19 17 25 25 H 1.08992 * 109.47160 * 299.99903 * 1 2 3 26 26 H 1.08999 * 109.46775 * 59.99905 * 1 2 3 27 27 H 1.09003 * 109.47124 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47074 * 239.99632 * 2 1 3 29 29 H 1.08999 * 109.46775 * 120.00094 * 2 1 3 30 30 H 1.08002 * 119.97065 * 0.02562 * 6 5 3 31 31 H 1.08004 * 119.94666 * 179.97438 * 7 6 5 32 32 H 1.07999 * 119.97478 * 179.97438 * 8 7 6 33 33 H 1.07992 * 120.03186 * 180.27379 * 9 8 7 34 34 H 1.09000 * 109.47035 * 60.00956 * 12 11 10 35 35 H 1.09000 * 109.47366 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.47582 * 300.00531 * 12 11 10 37 37 H 1.09002 * 109.47202 * 95.20316 * 14 13 3 38 38 H 1.08995 * 109.47316 * 215.20438 * 14 13 3 39 39 H 1.09005 * 109.47359 * 335.20583 * 14 13 3 40 40 H 0.97000 * 120.00131 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 6 4.2573 0.2881 -0.1218 7 6 5.6350 0.2890 -0.0078 8 6 6.3006 1.4463 0.3527 9 6 5.5905 2.6060 0.5947 10 6 4.2073 2.6066 0.4850 11 8 3.5059 3.7453 0.7265 12 6 4.2568 4.9041 1.0944 13 7 1.6524 2.0975 -1.2518 14 6 2.0310 1.5042 -2.5367 15 6 0.9477 3.2459 -1.2214 16 8 0.6329 3.7385 -0.1541 17 6 0.5609 3.9005 -2.4721 18 1 0.8406 3.4636 -3.4193 19 6 -0.1719 5.0936 -2.4405 20 7 -0.5099 5.6226 -1.2945 21 14 -0.6661 5.9287 -4.0368 22 1 -1.9902 5.4176 -4.4735 23 1 -0.7478 7.3960 -3.8230 24 1 0.3469 5.6365 -5.0825 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7398 -0.6172 -0.4030 31 1 6.1925 -0.6159 -0.1998 32 1 7.3770 1.4443 0.4415 33 1 6.1110 3.5107 0.8719 34 1 4.9544 5.1539 0.2949 35 1 3.5774 5.7404 1.2585 36 1 4.8115 4.7019 2.0106 37 1 1.2102 0.8918 -2.9100 38 1 2.2480 2.2966 -3.2529 39 1 2.9165 0.8826 -2.4031 40 1 -1.0171 6.4492 -1.2726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490939362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:35 Heat of formation + Delta-G solvation = -67.313383 kcal Electronic energy + Delta-G solvation = -22692.838677 eV Core-core repulsion = 19472.301408 eV Total energy + Delta-G solvation = -3220.537269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32138 -39.59504 -38.26450 -36.58864 -34.50861 -33.62818 -31.92487 -30.96063 -28.67033 -28.13278 -27.55643 -26.11798 -23.71873 -22.61642 -22.12880 -20.23971 -18.87786 -18.40124 -17.66068 -17.00752 -16.72012 -16.66713 -16.28582 -15.76164 -15.53273 -15.18047 -14.79351 -14.54931 -14.29208 -14.04478 -13.62406 -13.25122 -13.21483 -13.03359 -12.99386 -12.76259 -12.71156 -12.58383 -12.37484 -12.17218 -12.05937 -11.93571 -11.85445 -11.56474 -11.46063 -10.87282 -9.85216 -9.54440 -9.01991 -8.83415 -8.18944 -6.74191 0.43531 0.60633 1.37751 1.39675 1.53301 2.25925 2.55456 2.59423 2.79611 3.22741 3.71102 3.77110 3.96644 4.12726 4.22521 4.27963 4.29344 4.30196 4.45612 4.55480 4.59514 4.63536 4.66931 4.76223 4.85964 4.91200 4.99474 5.04898 5.08535 5.19041 5.29601 5.40565 5.42992 5.53809 5.59796 5.65469 5.93621 6.02247 6.23772 6.58789 6.66633 6.96083 7.60531 8.61877 8.82723 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.006667 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.685337 B = 4198.954984 C = 4864.922396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.195 3.805 4 H 0.048 0.952 5 C -0.145 4.145 6 C -0.077 4.077 7 C -0.158 4.158 8 C -0.082 4.082 9 C -0.223 4.223 10 C 0.111 3.889 11 O -0.328 6.328 12 C 0.030 3.970 13 N -0.629 5.629 14 C 0.106 3.894 15 C 0.552 3.448 16 O -0.614 6.614 17 C -0.573 4.573 18 H 0.082 0.918 19 C 0.032 3.968 20 N -0.821 5.821 21 Si 0.987 3.013 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.252 1.252 25 H 0.028 0.972 26 H 0.030 0.970 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.136 0.864 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.787 -10.451 0.053 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.091 3.909 4 H 0.066 0.934 5 C -0.147 4.147 6 C -0.095 4.095 7 C -0.176 4.176 8 C -0.100 4.100 9 C -0.242 4.242 10 C 0.065 3.935 11 O -0.241 6.241 12 C -0.065 4.065 13 N -0.365 5.365 14 C -0.037 4.037 15 C 0.357 3.643 16 O -0.500 6.500 17 C -0.609 4.609 18 H 0.100 0.900 19 C -0.183 4.183 20 N -0.451 5.451 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.175 1.175 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.310 -10.005 0.721 15.879 hybrid contribution -0.410 1.221 -0.326 1.329 sum 11.900 -8.784 0.395 14.796 Atomic orbital electron populations 1.21611 0.96395 1.01441 1.00224 1.21881 0.95722 0.94701 1.03279 1.19351 0.89425 0.93759 0.88412 0.93417 1.19879 0.96293 0.92749 1.05731 1.21239 0.94603 0.96546 0.97112 1.21390 0.93817 0.99482 1.02940 1.21286 1.00901 0.91529 0.96301 1.21447 0.91790 1.01541 1.09398 1.19492 0.91452 0.86790 0.95805 1.86411 1.36523 1.18179 1.83016 1.23068 0.97057 0.86185 1.00156 1.47724 1.58209 1.25668 1.04891 1.21369 0.99165 0.97645 0.85561 1.18380 0.76967 0.79041 0.89951 1.90537 1.59845 1.65866 1.33712 1.21500 1.37468 1.09115 0.92864 0.89956 1.26857 0.93557 0.97085 1.00765 1.70214 1.29393 1.16974 1.28534 0.85184 0.79478 0.77161 0.77472 1.18695 1.19926 1.17537 0.95318 0.95085 0.90182 0.89613 0.89589 0.83081 0.82609 0.82915 0.84596 0.92197 0.89859 0.90833 0.93852 0.93296 0.90920 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.80 71.98 0.71 -4.12 16 2 C -0.12 -3.72 4.04 30.60 0.12 -3.59 16 3 C 0.19 8.16 1.87 44.24 0.08 8.25 16 4 H 0.05 2.51 6.73 -2.39 -0.02 2.49 16 5 C -0.14 -5.23 4.73 -19.77 -0.09 -5.33 16 6 C -0.08 -2.03 8.41 22.25 0.19 -1.84 16 7 C -0.16 -3.43 10.04 22.28 0.22 -3.20 16 8 C -0.08 -1.87 10.04 22.25 0.22 -1.65 16 9 C -0.22 -6.55 9.04 22.37 0.20 -6.35 16 10 C 0.11 4.24 6.66 22.51 0.15 4.39 16 11 O -0.33 -14.98 9.64 -92.47 -0.89 -15.87 16 12 C 0.03 1.04 9.81 113.37 1.11 2.16 16 13 N -0.63 -29.81 2.20 -831.91 -1.83 -31.65 16 14 C 0.11 4.07 8.83 127.77 1.13 5.19 16 15 C 0.55 33.03 7.61 86.36 0.66 33.69 16 16 O -0.61 -42.06 14.18 -4.32 -0.06 -42.12 16 17 C -0.57 -33.68 8.73 24.83 0.22 -33.47 16 18 H 0.08 4.42 6.11 -2.91 -0.02 4.40 16 19 C 0.03 1.83 5.50 85.31 0.47 2.30 16 20 N -0.82 -51.74 11.83 21.84 0.26 -51.48 16 21 Si 0.99 42.67 29.56 68.60 2.03 44.70 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 25 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.03 1.24 7.75 -2.39 -0.02 1.22 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.09 2.27 6.27 -2.39 -0.01 2.26 16 29 H 0.09 2.29 7.97 -2.39 -0.02 2.27 16 30 H 0.15 3.17 6.08 -2.91 -0.02 3.16 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.14 3.44 6.30 -2.91 -0.02 3.42 16 34 H 0.06 1.84 7.65 -2.39 -0.02 1.82 16 35 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.07 2.03 7.67 -2.39 -0.02 2.01 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.99 6.40 -2.39 -0.02 1.98 16 39 H 0.07 2.29 6.79 -2.38 -0.02 2.28 16 40 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 Total: -1.00 -81.98 326.55 5.93 -76.05 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.04 Total: 23.93 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 5.39 Total: -3.56 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -1.58 Total: -83.13 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -0.95 Total: -57.99 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -81.98 5.93 -76.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490939362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.740 kcal (2) G-P(sol) polarization free energy of solvation -81.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds