Wall clock time and date at job start Mon Mar 30 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47651 * 2 1 4 4 H 1.08998 * 109.47262 * 305.00206 * 3 2 1 5 5 C 1.53006 * 109.47603 * 185.00021 * 3 2 1 6 6 C 1.52999 * 109.47317 * 175.00137 * 5 3 2 7 7 O 1.42903 * 109.46950 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47142 * 64.99617 * 3 2 1 9 9 C 1.34776 * 120.00410 * 275.00211 * 8 3 2 10 10 O 1.21545 * 119.99716 * 0.02562 * 9 8 3 11 11 C 1.47881 * 120.00235 * 179.97438 * 9 8 3 12 12 C 1.39919 * 120.02488 * 359.73184 * 11 9 8 13 13 C 1.38331 * 120.35661 * 179.71078 * 12 11 9 14 14 C 1.37753 * 120.41248 * 0.56089 * 13 12 11 15 15 C 1.40751 * 120.03866 * 359.72212 * 14 13 12 16 16 C 1.41441 * 120.17571 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00150 * 24.42517 * 16 15 14 18 18 C 1.39932 * 119.99267 * 204.42898 * 16 15 14 19 19 N 1.30825 * 120.00653 * 17.89112 * 18 16 15 20 20 Si 1.86806 * 119.99392 * 197.88702 * 18 16 15 21 21 H 1.48497 * 109.47371 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46975 * 120.00186 * 20 18 16 23 23 H 1.48499 * 109.47361 * 240.00195 * 20 18 16 24 24 C 1.38994 * 120.02679 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47098 * 300.00194 * 1 2 3 26 26 H 1.09006 * 109.46914 * 59.99857 * 1 2 3 27 27 H 1.09001 * 109.47441 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47098 * 239.99806 * 2 1 3 29 29 H 1.09006 * 109.46914 * 120.00143 * 2 1 3 30 30 H 1.08996 * 109.47081 * 54.99514 * 5 3 2 31 31 H 1.09003 * 109.46584 * 294.99671 * 5 3 2 32 32 H 1.08997 * 109.47129 * 59.99343 * 6 5 3 33 33 H 1.09001 * 109.46802 * 300.00109 * 6 5 3 34 34 H 0.96705 * 113.99549 * 179.97438 * 7 6 5 35 35 H 0.97006 * 119.99987 * 95.00653 * 8 3 2 36 36 H 1.08004 * 119.82178 * 359.97120 * 12 11 9 37 37 H 1.08008 * 119.79368 * 180.25684 * 13 12 11 38 38 H 1.08000 * 119.97695 * 179.73853 * 14 13 12 39 39 H 0.97003 * 119.99973 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.19978 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 6 4.0646 2.8849 -0.2511 7 8 5.4889 2.8865 -0.3679 8 7 1.6525 2.0975 1.2518 9 6 0.4352 2.6645 1.3669 10 8 -0.3412 2.6319 0.4323 11 6 0.0438 3.3252 2.6307 12 6 0.9347 3.3571 3.7092 13 6 0.5779 3.9785 4.8925 14 6 -0.6623 4.5628 5.0269 15 6 -1.5739 4.5356 3.9549 16 6 -2.8479 5.1351 4.0896 17 1 -2.9986 5.9275 4.8078 18 6 -3.9129 4.7015 3.2923 19 7 -3.8485 3.5428 2.6882 20 14 -5.4269 5.7771 3.0906 21 1 -5.2524 7.0287 3.8705 22 1 -5.6096 6.1103 1.6550 23 1 -6.6219 5.0476 3.5854 24 6 -1.2116 3.9096 2.7502 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8571 0.8799 -1.0112 31 1 4.0030 0.9835 0.7597 32 1 3.7724 3.4492 0.6344 33 1 3.6265 3.3456 -1.1364 34 1 5.8756 3.7689 -0.4517 35 1 2.2720 2.1232 1.9978 36 1 1.9077 2.8978 3.6158 37 1 1.2743 4.0013 5.7178 38 1 -0.9350 5.0424 5.9554 39 1 -4.5870 3.2421 2.1358 40 1 -1.9041 3.8836 1.9218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494720995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:03 Heat of formation + Delta-G solvation = -87.617359 kcal Electronic energy + Delta-G solvation = -21506.914083 eV Core-core repulsion = 18285.496367 eV Total energy + Delta-G solvation = -3221.417715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.63963 -37.57801 -36.91070 -35.53453 -33.78184 -32.10473 -30.96465 -29.80325 -29.41429 -25.77654 -25.22041 -22.79919 -21.83347 -21.04428 -20.45074 -19.60507 -17.84163 -17.39956 -16.24231 -16.00253 -15.14793 -15.06580 -14.88502 -14.62855 -14.04522 -13.79792 -13.44764 -13.10411 -12.95166 -12.61159 -12.50296 -12.45976 -11.84672 -11.64676 -11.32578 -11.18075 -11.09793 -11.05235 -10.88430 -10.77870 -10.55226 -10.48966 -10.08963 -10.00629 -9.70133 -9.23246 -8.98181 -8.58366 -7.64271 -7.53427 -6.81808 -4.42891 2.20483 2.79412 3.06936 3.11525 3.13723 3.68266 3.86353 3.91038 3.98701 4.62215 4.90387 4.93689 5.06921 5.33377 5.34494 5.45306 5.59030 5.60774 5.72831 5.76674 5.89561 6.01462 6.07220 6.15449 6.21681 6.26374 6.42879 6.70731 6.78460 6.91752 6.98015 7.01556 7.19995 7.37120 7.45664 7.69041 7.75305 7.91560 8.09733 8.18543 8.49513 8.79057 8.82137 8.97037 10.12767 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.004594 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.150971 B = 6093.754721 C = 6747.610470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.148 3.852 4 H 0.087 0.913 5 C -0.125 4.125 6 C 0.074 3.926 7 O -0.578 6.578 8 N -0.733 5.733 9 C 0.565 3.435 10 O -0.540 6.540 11 C -0.129 4.129 12 C -0.219 4.219 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.098 3.902 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.074 3.926 19 N -0.782 5.782 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.093 4.093 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.379 0.621 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.680 -2.836 -4.477 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.042 3.958 4 H 0.105 0.895 5 C -0.163 4.163 6 C -0.004 4.004 7 O -0.384 6.384 8 N -0.387 5.387 9 C 0.355 3.645 10 O -0.418 6.418 11 C -0.132 4.132 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.233 4.233 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.145 4.145 19 N -0.407 5.407 20 Si 0.733 3.267 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.113 4.113 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.226 0.774 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.871 -3.678 -5.270 11.779 hybrid contribution -0.319 0.926 0.305 1.026 sum 9.552 -2.753 -4.965 11.112 Atomic orbital electron populations 1.21809 0.94408 1.00304 1.03830 1.21922 0.97515 0.95755 1.01663 1.20872 0.92531 0.93766 0.88583 0.89467 1.21793 0.94449 0.96316 1.03731 1.22213 0.80425 0.97469 1.00305 1.86432 1.20868 1.34090 1.96989 1.46078 1.17561 1.59128 1.15931 1.18770 0.80446 0.76961 0.88288 1.90703 1.51056 1.59331 1.40674 1.19500 0.96882 1.04234 0.92589 1.20342 0.98545 1.09850 0.95166 1.20437 0.96184 0.98902 0.96087 1.21100 0.95829 1.08125 0.98202 1.17608 0.92725 0.90057 0.90021 1.19624 0.93276 1.17510 1.18480 0.90067 1.25956 1.00545 0.94419 0.93616 1.69797 1.32203 1.16158 1.22507 0.86252 0.80332 0.80944 0.79194 1.18336 1.19555 1.19904 1.21639 0.93251 0.98047 0.98355 0.91585 0.92290 0.93967 0.91679 0.92016 0.89996 0.90742 0.93004 0.93549 0.77423 0.76695 0.89318 0.88968 0.88667 0.90500 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.51 37.15 0.32 -2.03 16 2 C -0.13 -1.69 5.61 -26.74 -0.15 -1.84 16 3 C 0.15 1.99 2.26 -67.93 -0.15 1.83 16 4 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 5 C -0.12 -1.37 5.12 -26.73 -0.14 -1.51 16 6 C 0.07 0.81 6.93 37.16 0.26 1.07 16 7 O -0.58 -6.17 13.66 -35.23 -0.48 -6.65 16 8 N -0.73 -11.54 4.43 -54.74 -0.24 -11.78 16 9 C 0.56 11.73 6.34 -12.31 -0.08 11.65 16 10 O -0.54 -12.66 13.47 5.33 0.07 -12.58 16 11 C -0.13 -2.97 5.87 -105.04 -0.62 -3.58 16 12 C -0.22 -4.52 9.55 -38.92 -0.37 -4.89 16 13 C -0.10 -2.07 10.01 -39.72 -0.40 -2.46 16 14 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 15 C 0.10 2.58 5.57 -106.87 -0.60 1.98 16 16 C -0.46 -12.00 9.05 -37.73 -0.34 -12.35 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 18 C 0.07 1.85 5.14 -17.35 -0.09 1.76 16 19 N -0.78 -20.53 10.96 55.55 0.61 -19.92 16 20 Si 0.91 18.64 29.60 -169.99 -5.03 13.60 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.09 -2.43 8.24 -38.44 -0.32 -2.75 16 25 H 0.07 1.29 5.64 -51.93 -0.29 0.99 16 26 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.60 7.75 -51.93 -0.40 0.19 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.38 2.41 9.12 45.56 0.42 2.83 16 35 H 0.40 5.58 6.62 -40.82 -0.27 5.31 16 36 H 0.09 1.52 6.38 -52.48 -0.33 1.18 16 37 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 40 H 0.13 3.80 5.74 -52.49 -0.30 3.49 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -29.66 329.25 -8.08 -37.74 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.92 Total: 13.15 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -3.05 Total: -18.52 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.37 Total: -31.70 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.41 Total: -19.24 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.66 -8.08 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494720995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.879 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds