Wall clock time and date at job start Mon Mar 30 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47651 * 2 1 4 4 H 1.08998 * 109.47262 * 305.00206 * 3 2 1 5 5 C 1.53006 * 109.47603 * 185.00021 * 3 2 1 6 6 C 1.52999 * 109.47317 * 175.00137 * 5 3 2 7 7 O 1.42903 * 109.46950 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47142 * 64.99617 * 3 2 1 9 9 C 1.34776 * 120.00410 * 275.00211 * 8 3 2 10 10 O 1.21545 * 119.99716 * 0.02562 * 9 8 3 11 11 C 1.47881 * 120.00235 * 179.97438 * 9 8 3 12 12 C 1.39919 * 120.02488 * 359.73184 * 11 9 8 13 13 C 1.38331 * 120.35661 * 179.71078 * 12 11 9 14 14 C 1.37753 * 120.41248 * 0.56089 * 13 12 11 15 15 C 1.40751 * 120.03866 * 359.72212 * 14 13 12 16 16 C 1.41441 * 120.17571 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00150 * 24.42517 * 16 15 14 18 18 C 1.39932 * 119.99267 * 204.42898 * 16 15 14 19 19 N 1.30825 * 120.00653 * 17.89112 * 18 16 15 20 20 Si 1.86806 * 119.99392 * 197.88702 * 18 16 15 21 21 H 1.48497 * 109.47371 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46975 * 120.00186 * 20 18 16 23 23 H 1.48499 * 109.47361 * 240.00195 * 20 18 16 24 24 C 1.38994 * 120.02679 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47098 * 300.00194 * 1 2 3 26 26 H 1.09006 * 109.46914 * 59.99857 * 1 2 3 27 27 H 1.09001 * 109.47441 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47098 * 239.99806 * 2 1 3 29 29 H 1.09006 * 109.46914 * 120.00143 * 2 1 3 30 30 H 1.08996 * 109.47081 * 54.99514 * 5 3 2 31 31 H 1.09003 * 109.46584 * 294.99671 * 5 3 2 32 32 H 1.08997 * 109.47129 * 59.99343 * 6 5 3 33 33 H 1.09001 * 109.46802 * 300.00109 * 6 5 3 34 34 H 0.96705 * 113.99549 * 179.97438 * 7 6 5 35 35 H 0.97006 * 119.99987 * 95.00653 * 8 3 2 36 36 H 1.08004 * 119.82178 * 359.97120 * 12 11 9 37 37 H 1.08008 * 119.79368 * 180.25684 * 13 12 11 38 38 H 1.08000 * 119.97695 * 179.73853 * 14 13 12 39 39 H 0.97003 * 119.99973 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.19978 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 6 4.0646 2.8849 -0.2511 7 8 5.4889 2.8865 -0.3679 8 7 1.6525 2.0975 1.2518 9 6 0.4352 2.6645 1.3669 10 8 -0.3412 2.6319 0.4323 11 6 0.0438 3.3252 2.6307 12 6 0.9347 3.3571 3.7092 13 6 0.5779 3.9785 4.8925 14 6 -0.6623 4.5628 5.0269 15 6 -1.5739 4.5356 3.9549 16 6 -2.8479 5.1351 4.0896 17 1 -2.9986 5.9275 4.8078 18 6 -3.9129 4.7015 3.2923 19 7 -3.8485 3.5428 2.6882 20 14 -5.4269 5.7771 3.0906 21 1 -5.2524 7.0287 3.8705 22 1 -5.6096 6.1103 1.6550 23 1 -6.6219 5.0476 3.5854 24 6 -1.2116 3.9096 2.7502 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.8571 0.8799 -1.0112 31 1 4.0030 0.9835 0.7597 32 1 3.7724 3.4492 0.6344 33 1 3.6265 3.3456 -1.1364 34 1 5.8756 3.7689 -0.4517 35 1 2.2720 2.1232 1.9978 36 1 1.9077 2.8978 3.6158 37 1 1.2743 4.0013 5.7178 38 1 -0.9350 5.0424 5.9554 39 1 -4.5870 3.2421 2.1358 40 1 -1.9041 3.8836 1.9218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494720995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:03 Heat of formation + Delta-G solvation = -107.940551 kcal Electronic energy + Delta-G solvation = -21507.795363 eV Core-core repulsion = 18285.496367 eV Total energy + Delta-G solvation = -3222.298995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15587 -39.09227 -38.12850 -36.75471 -35.61971 -33.56428 -32.09503 -31.46465 -31.19729 -27.30465 -26.70487 -24.41228 -22.84055 -22.78981 -21.71086 -21.22394 -19.51110 -18.40580 -17.69407 -17.53186 -16.78595 -16.43639 -16.33353 -15.95484 -15.44327 -15.09053 -14.96451 -14.61781 -14.34754 -14.24528 -14.09553 -13.58604 -13.43517 -12.94595 -12.79567 -12.78536 -12.54993 -12.46777 -12.19430 -12.07868 -11.95317 -11.85801 -11.72131 -11.49062 -11.07882 -10.90991 -10.66196 -9.99316 -9.45903 -9.37476 -8.66887 -6.38232 0.41678 1.00954 1.35946 1.46136 1.51975 2.14769 2.19444 2.30908 2.80089 3.15741 3.70813 3.94320 3.98873 4.07032 4.17137 4.26477 4.37428 4.42744 4.51915 4.60082 4.62020 4.75936 4.89422 4.96287 4.99037 5.04044 5.09015 5.10777 5.19760 5.23609 5.32501 5.46549 5.52943 5.63918 5.87873 5.93983 6.06111 6.29679 6.53634 6.73335 6.85335 6.88353 6.95169 7.40675 8.29769 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.004594 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.150971 B = 6093.754721 C = 6747.610470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.147 3.853 4 H 0.068 0.932 5 C -0.115 4.115 6 C 0.074 3.926 7 O -0.588 6.588 8 N -0.710 5.710 9 C 0.563 3.437 10 O -0.575 6.575 11 C -0.138 4.138 12 C -0.199 4.199 13 C -0.096 4.096 14 C -0.220 4.220 15 C 0.067 3.933 16 C -0.499 4.499 17 H 0.082 0.918 18 C 0.031 3.969 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.252 1.252 22 H -0.270 1.270 23 H -0.264 1.264 24 C -0.131 4.131 25 H 0.025 0.975 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.397 0.603 35 H 0.409 0.591 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.286 0.714 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.413 -3.506 -3.981 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C 0.043 3.957 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.004 4.004 7 O -0.397 6.397 8 N -0.363 5.363 9 C 0.353 3.647 10 O -0.456 6.456 11 C -0.142 4.142 12 C -0.219 4.219 13 C -0.114 4.114 14 C -0.240 4.240 15 C 0.065 3.935 16 C -0.528 4.528 17 H 0.101 0.899 18 C -0.184 4.184 19 N -0.450 5.450 20 Si 0.801 3.199 21 H -0.175 1.175 22 H -0.195 1.195 23 H -0.189 1.189 24 C -0.152 4.152 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.247 0.753 35 H 0.247 0.753 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.670 -4.350 -4.755 14.215 hybrid contribution -0.939 1.069 0.167 1.433 sum 11.730 -3.281 -4.588 13.016 Atomic orbital electron populations 1.21743 0.97070 1.00332 1.00958 1.21913 0.94870 0.95635 1.03819 1.21024 0.94533 0.93597 0.86554 0.91335 1.21699 0.91779 0.96699 1.05056 1.22148 0.80875 0.97382 0.99992 1.86382 1.20390 1.35951 1.96949 1.45878 1.15695 1.57503 1.17255 1.18547 0.81684 0.77270 0.87183 1.90688 1.52545 1.60792 1.41583 1.19849 0.96282 1.03494 0.94543 1.20851 0.99522 1.07717 0.93761 1.20917 0.95784 0.97258 0.97475 1.21399 0.96575 1.08115 0.97890 1.17948 0.93715 0.90955 0.90896 1.19887 0.94243 1.18598 1.20063 0.89950 1.26820 1.03469 0.95291 0.92803 1.69895 1.33342 1.17953 1.23773 0.85179 0.76506 0.79207 0.78978 1.17476 1.19535 1.18872 1.21444 0.94623 1.01228 0.97876 0.95533 0.94113 0.92436 0.88640 0.90616 0.88386 0.89539 0.93591 0.93786 0.75340 0.75292 0.84723 0.84546 0.87561 0.90357 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.51 71.98 0.61 -4.00 16 2 C -0.12 -2.92 5.61 30.59 0.17 -2.75 16 3 C 0.15 3.67 2.26 44.99 0.10 3.77 16 4 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 5 C -0.11 -2.11 5.12 30.60 0.16 -1.95 16 6 C 0.07 1.43 6.93 71.98 0.50 1.93 16 7 O -0.59 -10.69 13.66 -148.98 -2.04 -12.73 16 8 N -0.71 -21.13 4.43 -445.38 -1.97 -23.10 16 9 C 0.56 23.67 6.34 86.80 0.55 24.22 16 10 O -0.58 -28.31 13.47 -3.86 -0.05 -28.36 16 11 C -0.14 -6.43 5.87 -20.14 -0.12 -6.55 16 12 C -0.20 -7.69 9.55 22.70 0.22 -7.48 16 13 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 14 C -0.22 -10.30 9.78 22.77 0.22 -10.08 16 15 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 16 C -0.50 -27.29 9.05 23.47 0.21 -27.07 16 17 H 0.08 4.27 7.91 -2.91 -0.02 4.25 16 18 C 0.03 1.63 5.14 85.25 0.44 2.07 16 19 N -0.82 -46.05 10.96 21.82 0.24 -45.81 16 20 Si 0.98 39.77 29.60 68.60 2.03 41.80 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 24 C -0.13 -7.24 8.24 23.01 0.19 -7.05 16 25 H 0.03 1.04 5.64 -2.39 -0.01 1.03 16 26 H 0.04 1.42 7.84 -2.38 -0.02 1.40 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.05 0.93 7.75 -2.39 -0.02 0.91 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.40 3.92 9.12 -74.05 -0.68 3.25 16 35 H 0.41 10.08 6.62 -92.70 -0.61 9.47 16 36 H 0.14 3.93 6.38 -2.91 -0.02 3.91 16 37 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 39 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 40 H 0.10 6.10 5.74 -2.91 -0.02 6.09 16 Total: -1.00 -69.41 329.25 1.34 -68.08 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.23 Total: 35.14 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 3.36 Total: -35.01 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -1.74 Total: -68.91 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.09 Total: -41.09 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -69.41 1.34 -68.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494720995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.865 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds