Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.08998 * 109.47054 * 55.00201 * 3 2 1 5 5 C 1.53006 * 109.47015 * 174.99778 * 3 2 1 6 6 C 1.52998 * 109.47087 * 185.00028 * 5 3 2 7 7 O 1.42899 * 109.47274 * 179.97438 * 6 5 3 8 8 N 1.46502 * 109.47345 * 294.99837 * 3 2 1 9 9 C 1.34774 * 119.99623 * 85.00349 * 8 3 2 10 10 O 1.21546 * 120.00362 * 359.97438 * 9 8 3 11 11 C 1.47893 * 119.99985 * 179.97438 * 9 8 3 12 12 C 1.39918 * 120.02141 * 359.72406 * 11 9 8 13 13 C 1.38325 * 120.35748 * 179.71441 * 12 11 9 14 14 C 1.37755 * 120.40899 * 0.56254 * 13 12 11 15 15 C 1.40746 * 120.04079 * 359.71552 * 14 13 12 16 16 C 1.41434 * 120.17787 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00450 * 150.18153 * 16 15 14 18 18 C 1.39939 * 119.99803 * 330.17720 * 16 15 14 19 19 N 1.30831 * 119.99850 * 161.73239 * 18 16 15 20 20 Si 1.86797 * 120.00259 * 341.73299 * 18 16 15 21 21 H 1.48492 * 109.47356 * 95.41144 * 20 18 16 22 22 H 1.48504 * 109.47130 * 215.40928 * 20 18 16 23 23 H 1.48503 * 109.46953 * 335.40952 * 20 18 16 24 24 C 1.38990 * 120.02516 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47211 * 300.00166 * 1 2 3 26 26 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46941 * 59.99669 * 1 2 3 28 28 H 1.08993 * 109.47001 * 120.00103 * 2 1 3 29 29 H 1.09002 * 109.46988 * 240.00580 * 2 1 3 30 30 H 1.08996 * 109.47325 * 305.00421 * 5 3 2 31 31 H 1.09001 * 109.46852 * 65.00659 * 5 3 2 32 32 H 1.08996 * 109.47359 * 300.00372 * 6 5 3 33 33 H 1.08999 * 109.47220 * 59.99964 * 6 5 3 34 34 H 0.96701 * 114.00199 * 180.02562 * 7 6 5 35 35 H 0.96997 * 119.99931 * 264.99451 * 8 3 2 36 36 H 1.08000 * 119.82201 * 359.97438 * 12 11 9 37 37 H 1.08003 * 119.80017 * 180.25396 * 13 12 11 38 38 H 1.08003 * 119.97556 * 179.74395 * 14 13 12 39 39 H 0.96996 * 120.00189 * 180.02562 * 19 18 16 40 40 H 1.07991 * 120.20615 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 6 4.0645 2.8850 0.2512 7 8 5.4886 2.8867 0.3693 8 7 1.6525 2.0975 -1.2518 9 6 0.4352 2.6645 -1.3669 10 8 -0.3413 2.6319 -0.4323 11 6 0.0441 3.3262 -2.6304 12 6 0.9397 3.3690 -3.7046 13 6 0.5789 3.9810 -4.8915 14 6 -0.6613 4.5653 -5.0259 15 6 -1.5733 4.5372 -3.9543 16 6 -2.8476 5.1358 -4.0893 17 1 -3.6896 4.7436 -3.5384 18 6 -3.0174 6.2363 -4.9369 19 7 -4.2151 6.5690 -5.3450 20 14 -1.5341 7.2303 -5.4856 21 1 -1.0731 6.7417 -6.8099 22 1 -1.9097 8.6633 -5.5900 23 1 -0.4404 7.0763 -4.4929 24 6 -1.2113 3.9106 -2.7498 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8571 0.8800 1.0113 31 1 4.0030 0.9837 -0.7596 32 1 3.7723 3.4493 -0.6343 33 1 3.6264 3.3458 1.1365 34 1 5.8753 3.7691 0.4532 35 1 2.2720 2.1233 -1.9977 36 1 1.9163 2.9182 -3.6079 37 1 1.2758 4.0052 -5.7163 38 1 -0.9341 5.0448 -5.9544 39 1 -4.3328 7.3315 -5.9328 40 1 -1.9044 3.8831 -1.9221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494720996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = -86.370496 kcal Electronic energy + Delta-G solvation = -21352.708200 eV Core-core repulsion = 18131.344552 eV Total energy + Delta-G solvation = -3221.363647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86834 -37.80097 -37.11131 -35.71421 -33.75521 -32.32883 -31.12135 -30.36571 -29.89567 -25.91934 -25.15123 -23.22380 -21.94887 -20.96098 -20.57308 -20.06533 -18.03166 -17.43535 -16.42042 -16.32077 -15.42832 -15.25109 -15.07814 -14.70035 -14.17058 -13.91716 -13.70945 -13.35001 -13.06501 -12.79216 -12.74258 -12.59388 -12.02966 -11.95694 -11.63966 -11.46383 -11.21510 -11.04802 -11.01185 -10.81549 -10.71440 -10.55251 -10.17025 -10.02723 -9.74398 -9.42935 -9.14333 -8.78355 -7.89439 -7.78475 -7.03002 -4.57902 1.89634 2.49082 3.03208 3.15143 3.23215 3.48225 3.60502 3.89456 3.90646 4.46010 4.80234 4.81840 4.95678 5.20338 5.22268 5.29806 5.33446 5.42191 5.55907 5.64035 5.78967 5.82629 5.89531 6.00119 6.01127 6.07324 6.26392 6.37171 6.58907 6.64011 6.66025 6.74792 6.95857 7.18832 7.38033 7.38480 7.47494 7.72726 7.78528 7.99602 8.25766 8.50662 8.67304 8.71983 9.99198 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.004400 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.866011 B = 6362.317458 C = 7074.812056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.147 3.853 4 H 0.089 0.911 5 C -0.125 4.125 6 C 0.073 3.927 7 O -0.578 6.578 8 N -0.730 5.730 9 C 0.564 3.436 10 O -0.541 6.541 11 C -0.109 4.109 12 C -0.217 4.217 13 C -0.083 4.083 14 C -0.222 4.222 15 C 0.082 3.918 16 C -0.443 4.443 17 H 0.094 0.906 18 C 0.084 3.916 19 N -0.803 5.803 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.244 1.244 24 C -0.136 4.136 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.380 0.620 35 H 0.399 0.601 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.286 0.714 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.240 -6.206 6.351 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.042 3.958 4 H 0.107 0.893 5 C -0.163 4.163 6 C -0.004 4.004 7 O -0.384 6.384 8 N -0.384 5.384 9 C 0.354 3.646 10 O -0.419 6.419 11 C -0.112 4.112 12 C -0.237 4.237 13 C -0.101 4.101 14 C -0.242 4.242 15 C 0.079 3.921 16 C -0.471 4.471 17 H 0.112 0.888 18 C -0.136 4.136 19 N -0.427 5.427 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.167 1.167 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.227 0.773 35 H 0.235 0.765 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.347 -6.726 6.877 16.452 hybrid contribution 0.856 1.141 -0.791 1.631 sum 14.203 -5.586 6.086 16.430 Atomic orbital electron populations 1.21813 0.94527 1.00405 1.03629 1.21925 0.97432 0.95686 1.01873 1.20911 0.92736 0.93793 0.88356 0.89316 1.21797 0.94279 0.96411 1.03860 1.22209 0.80551 0.97385 1.00296 1.86430 1.20796 1.34159 1.96969 1.46065 1.17388 1.58782 1.16144 1.18715 0.80696 0.77034 0.88107 1.90706 1.51203 1.59440 1.40596 1.19454 0.96619 1.02501 0.92658 1.20382 0.98635 1.09974 0.94737 1.20513 0.95848 0.97600 0.96180 1.21175 0.96306 1.07958 0.98729 1.17698 0.92722 0.91507 0.90180 1.19526 0.94602 1.11455 1.21507 0.88846 1.26168 0.97333 0.97525 0.92555 1.69691 1.24144 1.24138 1.24722 0.86308 0.82228 0.77371 0.80360 1.19548 1.21644 1.16739 1.21270 0.94823 1.02296 0.97234 0.92203 0.93819 0.91855 0.91484 0.91917 0.89864 0.90678 0.93057 0.93517 0.77339 0.76518 0.88682 0.88338 0.87925 0.90298 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.51 37.16 0.32 -1.73 16 2 C -0.13 -1.48 5.61 -26.73 -0.15 -1.63 16 3 C 0.15 1.74 2.26 -67.93 -0.15 1.59 16 4 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 5 C -0.13 -1.22 5.12 -26.73 -0.14 -1.36 16 6 C 0.07 0.73 6.93 37.16 0.26 0.99 16 7 O -0.58 -5.72 13.66 -35.23 -0.48 -6.21 16 8 N -0.73 -10.15 4.43 -54.73 -0.24 -10.39 16 9 C 0.56 10.41 6.34 -12.31 -0.08 10.33 16 10 O -0.54 -11.29 13.47 5.32 0.07 -11.22 16 11 C -0.11 -2.26 5.87 -105.04 -0.62 -2.87 16 12 C -0.22 -4.10 9.55 -38.92 -0.37 -4.47 16 13 C -0.08 -1.67 10.01 -39.73 -0.40 -2.07 16 14 C -0.22 -5.12 7.17 -38.81 -0.28 -5.39 16 15 C 0.08 2.04 5.10 -106.87 -0.55 1.49 16 16 C -0.44 -11.81 9.57 -37.73 -0.36 -12.17 16 17 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 18 C 0.08 2.15 5.40 -17.34 -0.09 2.05 16 19 N -0.80 -21.03 13.93 55.55 0.77 -20.26 16 20 Si 0.91 20.17 24.52 -169.99 -4.17 16.00 16 21 H -0.27 -5.73 6.71 56.52 0.38 -5.35 16 22 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.24 -5.53 6.86 56.52 0.39 -5.14 16 24 C -0.14 -3.21 9.34 -38.44 -0.36 -3.57 16 25 H 0.06 0.89 7.84 -51.93 -0.41 0.48 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.07 5.64 -51.93 -0.29 0.78 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.54 7.75 -51.93 -0.40 0.13 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.38 2.17 9.12 45.56 0.42 2.59 16 35 H 0.40 4.88 6.62 -40.82 -0.27 4.61 16 36 H 0.10 1.44 6.38 -52.49 -0.33 1.11 16 37 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.10 2.35 4.72 -52.48 -0.25 2.10 16 39 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.12 2.77 7.64 -52.49 -0.40 2.37 16 LS Contribution 324.01 15.07 4.88 4.88 Total: -1.00 -29.16 324.01 -7.02 -36.18 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -4.89 Total: 9.81 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.97 Total: -18.81 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.53 Total: -30.65 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.41 Total: -17.42 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.17 Total: 16.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.16 -7.02 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494720996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.189 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds