Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.08998 * 109.47054 * 55.00201 * 3 2 1 5 5 C 1.53006 * 109.47015 * 174.99778 * 3 2 1 6 6 C 1.52998 * 109.47087 * 185.00028 * 5 3 2 7 7 O 1.42899 * 109.47274 * 179.97438 * 6 5 3 8 8 N 1.46502 * 109.47345 * 294.99837 * 3 2 1 9 9 C 1.34774 * 119.99623 * 85.00349 * 8 3 2 10 10 O 1.21546 * 120.00362 * 359.97438 * 9 8 3 11 11 C 1.47893 * 119.99985 * 179.97438 * 9 8 3 12 12 C 1.39918 * 120.02141 * 359.72406 * 11 9 8 13 13 C 1.38325 * 120.35748 * 179.71441 * 12 11 9 14 14 C 1.37755 * 120.40899 * 0.56254 * 13 12 11 15 15 C 1.40746 * 120.04079 * 359.71552 * 14 13 12 16 16 C 1.41434 * 120.17787 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00450 * 150.18153 * 16 15 14 18 18 C 1.39939 * 119.99803 * 330.17720 * 16 15 14 19 19 N 1.30831 * 119.99850 * 161.73239 * 18 16 15 20 20 Si 1.86797 * 120.00259 * 341.73299 * 18 16 15 21 21 H 1.48492 * 109.47356 * 95.41144 * 20 18 16 22 22 H 1.48504 * 109.47130 * 215.40928 * 20 18 16 23 23 H 1.48503 * 109.46953 * 335.40952 * 20 18 16 24 24 C 1.38990 * 120.02516 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47211 * 300.00166 * 1 2 3 26 26 H 1.08997 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46941 * 59.99669 * 1 2 3 28 28 H 1.08993 * 109.47001 * 120.00103 * 2 1 3 29 29 H 1.09002 * 109.46988 * 240.00580 * 2 1 3 30 30 H 1.08996 * 109.47325 * 305.00421 * 5 3 2 31 31 H 1.09001 * 109.46852 * 65.00659 * 5 3 2 32 32 H 1.08996 * 109.47359 * 300.00372 * 6 5 3 33 33 H 1.08999 * 109.47220 * 59.99964 * 6 5 3 34 34 H 0.96701 * 114.00199 * 180.02562 * 7 6 5 35 35 H 0.96997 * 119.99931 * 264.99451 * 8 3 2 36 36 H 1.08000 * 119.82201 * 359.97438 * 12 11 9 37 37 H 1.08003 * 119.80017 * 180.25396 * 13 12 11 38 38 H 1.08003 * 119.97556 * 179.74395 * 14 13 12 39 39 H 0.96996 * 120.00189 * 180.02562 * 19 18 16 40 40 H 1.07991 * 120.20615 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 6 4.0645 2.8850 0.2512 7 8 5.4886 2.8867 0.3693 8 7 1.6525 2.0975 -1.2518 9 6 0.4352 2.6645 -1.3669 10 8 -0.3413 2.6319 -0.4323 11 6 0.0441 3.3262 -2.6304 12 6 0.9397 3.3690 -3.7046 13 6 0.5789 3.9810 -4.8915 14 6 -0.6613 4.5653 -5.0259 15 6 -1.5733 4.5372 -3.9543 16 6 -2.8476 5.1358 -4.0893 17 1 -3.6896 4.7436 -3.5384 18 6 -3.0174 6.2363 -4.9369 19 7 -4.2151 6.5690 -5.3450 20 14 -1.5341 7.2303 -5.4856 21 1 -1.0731 6.7417 -6.8099 22 1 -1.9097 8.6633 -5.5900 23 1 -0.4404 7.0763 -4.4929 24 6 -1.2113 3.9106 -2.7498 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8571 0.8800 1.0113 31 1 4.0030 0.9837 -0.7596 32 1 3.7723 3.4493 -0.6343 33 1 3.6264 3.3458 1.1365 34 1 5.8753 3.7691 0.4532 35 1 2.2720 2.1233 -1.9977 36 1 1.9163 2.9182 -3.6079 37 1 1.2758 4.0052 -5.7163 38 1 -0.9341 5.0448 -5.9544 39 1 -4.3328 7.3315 -5.9328 40 1 -1.9044 3.8831 -1.9221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494720996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = -107.646223 kcal Electronic energy + Delta-G solvation = -21353.630785 eV Core-core repulsion = 18131.344552 eV Total energy + Delta-G solvation = -3222.286232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25666 -39.30896 -38.17493 -36.78456 -35.59552 -33.69229 -32.28525 -31.88269 -31.48652 -27.27559 -26.65868 -24.75387 -22.80268 -22.53342 -21.92684 -21.48208 -19.60460 -18.37781 -17.97853 -17.61010 -17.00217 -16.54076 -16.40485 -15.98720 -15.47990 -15.33833 -14.97419 -14.62196 -14.49531 -14.35456 -14.23169 -13.75752 -13.56257 -13.33525 -12.86789 -12.77487 -12.65699 -12.47709 -12.28416 -12.06431 -11.94690 -11.80479 -11.69070 -11.55897 -11.17227 -10.90124 -10.73990 -10.03623 -9.62587 -9.54507 -8.92183 -6.56078 0.20801 0.74360 1.24812 1.40941 1.47747 1.99414 2.12519 2.23467 2.66503 3.16584 3.46050 3.90266 3.97186 4.01706 4.16396 4.26596 4.27915 4.37191 4.42518 4.53170 4.57251 4.64223 4.76758 4.89167 4.91688 4.97060 4.99270 5.06363 5.11918 5.15987 5.23186 5.42598 5.47260 5.59025 5.66057 5.72750 5.84602 6.11353 6.30086 6.62309 6.66865 6.73905 6.85916 7.31760 8.17042 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.004400 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.866011 B = 6362.317458 C = 7074.812056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.147 3.853 4 H 0.071 0.929 5 C -0.116 4.116 6 C 0.072 3.928 7 O -0.590 6.590 8 N -0.707 5.707 9 C 0.564 3.436 10 O -0.573 6.573 11 C -0.113 4.113 12 C -0.183 4.183 13 C -0.083 4.083 14 C -0.226 4.226 15 C 0.066 3.934 16 C -0.490 4.490 17 H 0.049 0.951 18 C 0.046 3.954 19 N -0.850 5.850 20 Si 0.968 3.032 21 H -0.247 1.247 22 H -0.278 1.278 23 H -0.251 1.251 24 C -0.167 4.167 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.397 0.603 35 H 0.412 0.588 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.105 0.895 39 H 0.295 0.705 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.278 -7.409 5.647 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.043 3.957 4 H 0.089 0.911 5 C -0.154 4.154 6 C -0.005 4.005 7 O -0.398 6.398 8 N -0.361 5.361 9 C 0.353 3.647 10 O -0.453 6.453 11 C -0.116 4.116 12 C -0.203 4.203 13 C -0.101 4.101 14 C -0.246 4.246 15 C 0.063 3.937 16 C -0.520 4.520 17 H 0.067 0.933 18 C -0.169 4.169 19 N -0.476 5.476 20 Si 0.790 3.210 21 H -0.172 1.172 22 H -0.204 1.204 23 H -0.175 1.175 24 C -0.187 4.187 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.246 0.754 35 H 0.250 0.750 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 18.429 -7.946 6.168 20.995 hybrid contribution -0.524 1.311 -0.434 1.477 sum 17.905 -6.635 5.734 19.937 Atomic orbital electron populations 1.21766 0.96903 1.00490 1.01110 1.21917 0.95071 0.95492 1.03879 1.21043 0.94467 0.93692 0.86489 0.91082 1.21711 0.91915 0.96640 1.05089 1.22175 0.80854 0.97440 1.00062 1.86382 1.20515 1.35959 1.96942 1.45882 1.15614 1.57150 1.17404 1.18435 0.81908 0.77391 0.86955 1.90706 1.52563 1.60698 1.41372 1.19774 0.95647 1.01599 0.94594 1.21001 0.99744 1.06577 0.92942 1.21039 0.95185 0.95929 0.97937 1.21375 0.97189 1.08043 0.97985 1.17771 0.92618 0.91945 0.91328 1.19469 0.94697 1.14066 1.23751 0.93320 1.26901 1.00009 0.97684 0.92273 1.69727 1.25884 1.25481 1.26544 0.85455 0.78579 0.76470 0.80465 1.17181 1.20418 1.17496 1.21194 0.96336 1.04628 0.96576 0.93979 0.92423 0.95139 0.88834 0.90480 0.88520 0.89444 0.93399 0.93816 0.75355 0.75028 0.83435 0.83642 0.87733 0.89452 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.51 71.98 0.61 -3.32 16 2 C -0.13 -2.44 5.61 30.59 0.17 -2.27 16 3 C 0.15 3.06 2.26 44.99 0.10 3.16 16 4 H 0.07 1.79 7.58 -2.39 -0.02 1.78 16 5 C -0.12 -1.77 5.12 30.60 0.16 -1.61 16 6 C 0.07 1.20 6.93 71.98 0.50 1.70 16 7 O -0.59 -9.52 13.66 -148.98 -2.03 -11.56 16 8 N -0.71 -17.42 4.43 -445.35 -1.97 -19.40 16 9 C 0.56 20.22 6.34 86.80 0.55 20.77 16 10 O -0.57 -24.46 13.47 -3.86 -0.05 -24.52 16 11 C -0.11 -4.54 5.87 -20.13 -0.12 -4.65 16 12 C -0.18 -6.06 9.55 22.70 0.22 -5.84 16 13 C -0.08 -2.95 10.01 22.18 0.22 -2.73 16 14 C -0.23 -10.09 7.17 22.77 0.16 -9.93 16 15 C 0.07 3.39 5.10 -21.32 -0.11 3.28 16 16 C -0.49 -28.30 9.57 23.47 0.22 -28.07 16 17 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 18 C 0.05 2.46 5.40 85.25 0.46 2.92 16 19 N -0.85 -47.12 13.93 21.83 0.30 -46.82 16 20 Si 0.97 41.66 24.52 68.60 1.68 43.34 16 21 H -0.25 -9.66 6.71 99.48 0.67 -8.99 16 22 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.25 -10.96 6.86 99.48 0.68 -10.27 16 24 C -0.17 -8.23 9.34 23.01 0.21 -8.02 16 25 H 0.04 1.26 7.84 -2.39 -0.02 1.24 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.03 1.01 5.64 -2.38 -0.01 1.00 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 0.81 7.75 -2.39 -0.02 0.80 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.40 3.23 9.12 -74.06 -0.68 2.56 16 35 H 0.41 7.94 6.62 -92.71 -0.61 7.33 16 36 H 0.15 3.38 6.38 -2.91 -0.02 3.36 16 37 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.10 4.60 4.72 -2.91 -0.01 4.58 16 39 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 40 H 0.09 4.70 7.64 -2.92 -0.02 4.68 16 Total: -1.00 -69.17 324.01 1.00 -68.16 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.29 Total: 25.41 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 3.37 Total: -34.62 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -1.67 Total: -66.22 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -2.09 Total: -36.08 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.68 Total: 43.34 kcal Total: -69.17 1.00 -68.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494720996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.484 kcal (2) G-P(sol) polarization free energy of solvation -69.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds