Wall clock time and date at job start Mon Mar 30 2020 02:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 O 1.42895 * 109.47036 * 299.99442 * 4 2 1 6 6 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 7 7 H 1.09002 * 109.47153 * 60.00555 * 6 2 1 8 8 N 1.46500 * 109.47473 * 300.00312 * 6 2 1 9 9 C 1.34780 * 119.99910 * 85.00011 * 8 6 2 10 10 O 1.21687 * 120.00126 * 359.97438 * 9 8 6 11 11 C 1.46373 * 120.00139 * 180.02562 * 9 8 6 12 12 H 1.08004 * 119.99911 * 359.97438 * 11 9 8 13 13 C 1.40047 * 120.00263 * 180.02562 * 11 9 8 14 14 N 1.30675 * 119.99571 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00242 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47109 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47293 * 119.99692 * 15 13 11 18 18 H 1.48505 * 109.47030 * 239.99776 * 15 13 11 19 19 C 1.50699 * 109.47078 * 180.02562 * 6 2 1 20 20 C 1.38243 * 119.99923 * 79.72852 * 19 6 2 21 21 C 1.38228 * 119.99682 * 179.78691 * 20 19 6 22 22 C 1.38236 * 120.00434 * 0.44400 * 21 20 19 23 23 C 1.38237 * 119.99587 * 359.80584 * 22 21 20 24 24 C 1.38226 * 120.00104 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 31 31 H 1.09001 * 109.46801 * 59.99811 * 4 2 1 32 32 H 1.09001 * 109.46998 * 179.97438 * 4 2 1 33 33 H 0.96700 * 114.00205 * 179.97438 * 5 4 2 34 34 H 0.96998 * 120.00374 * 264.99990 * 8 6 2 35 35 H 0.97003 * 119.99614 * 180.02562 * 14 13 11 36 36 H 1.07995 * 119.99787 * 0.02562 * 20 19 6 37 37 H 1.08002 * 119.99821 * 180.27377 * 21 20 19 38 38 H 1.08001 * 120.00139 * 179.83377 * 22 21 20 39 39 H 1.08002 * 119.99928 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00147 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 1.5636 -0.0476 2.4160 6 6 2.0399 -0.7213 -1.2492 7 1 1.6767 -0.2075 -2.1392 8 7 1.5516 -2.1025 -1.2492 9 6 0.3296 -2.3852 -1.7425 10 8 -0.3683 -1.4931 -2.1875 11 6 -0.1586 -3.7651 -1.7421 12 1 0.4605 -4.5569 -1.3468 13 6 -1.4282 -4.0589 -2.2552 14 7 -2.1771 -3.1010 -2.7339 15 14 -2.0509 -5.8200 -2.2552 16 1 -1.0196 -6.7098 -1.6635 17 1 -3.2975 -5.9043 -1.4527 18 1 -2.3304 -6.2462 -3.6501 19 6 3.5469 -0.7219 -1.2489 20 6 4.2376 -1.6357 -0.4749 21 6 5.6199 -1.6390 -0.4781 22 6 6.3117 -0.7227 -1.2480 23 6 5.6209 0.1944 -2.0179 24 6 4.2387 0.1948 -2.0183 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6764 -1.7489 1.2493 32 1 3.1299 -0.7217 1.2492 33 1 1.8485 -0.4513 3.2472 34 1 2.1076 -2.8136 -0.8942 35 1 -3.0566 -3.3045 -3.0889 36 1 3.6972 -2.3494 0.1291 37 1 6.1595 -2.3558 0.1231 38 1 7.3917 -0.7236 -1.2484 39 1 6.1613 0.9106 -2.6192 40 1 3.6990 0.9116 -2.6195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562964586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:27 Heat of formation + Delta-G solvation = -69.114601 kcal Electronic energy + Delta-G solvation = -22519.811497 eV Core-core repulsion = 19299.196121 eV Total energy + Delta-G solvation = -3220.615376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03221 -37.84349 -36.62525 -34.76495 -32.53521 -32.06066 -30.87990 -30.42966 -26.79950 -26.34259 -25.76532 -24.76915 -22.36858 -21.24771 -19.83509 -18.18395 -17.63280 -17.10952 -16.33671 -15.47018 -15.09823 -14.94941 -14.53819 -14.19866 -14.11366 -14.00527 -13.36377 -13.22616 -12.60842 -12.50983 -12.23558 -12.10378 -11.76205 -11.57268 -11.34970 -11.23745 -11.06397 -10.91444 -10.75364 -10.56674 -10.45764 -10.21132 -10.04836 -9.86721 -9.55896 -8.85504 -8.74581 -8.51573 -7.58132 -7.45710 -6.18323 -4.63755 1.50062 1.52776 3.12421 3.21066 3.24785 3.90884 4.10751 4.56005 4.62308 4.79182 4.96933 5.04671 5.09684 5.22805 5.41014 5.50000 5.56741 5.63664 5.72247 5.83276 5.88610 6.02082 6.10880 6.12695 6.17223 6.31219 6.40417 6.55266 6.56143 6.61084 6.65564 6.84021 6.88477 7.00752 7.13769 7.41384 7.44113 7.89552 7.93087 8.08761 8.32166 9.03074 9.51785 10.59991 10.79127 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.005833 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.090057 B = 4799.328433 C = 5399.355546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.135 4.135 4 C 0.083 3.917 5 O -0.570 6.570 6 C 0.201 3.799 7 H 0.089 0.911 8 N -0.760 5.760 9 C 0.558 3.442 10 O -0.570 6.570 11 C -0.546 4.546 12 H 0.065 0.935 13 C 0.089 3.911 14 N -0.766 5.766 15 Si 0.904 3.096 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.070 4.070 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.110 4.110 25 H 0.038 0.962 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.369 0.631 34 H 0.378 0.622 35 H 0.267 0.733 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.466 3.747 6.034 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.192 4.192 4 C 0.005 3.995 5 O -0.374 6.374 6 C 0.095 3.905 7 H 0.107 0.893 8 N -0.415 5.415 9 C 0.362 3.638 10 O -0.452 6.452 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.394 5.394 15 Si 0.729 3.271 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.129 4.129 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.214 0.786 34 H 0.210 0.790 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.466 4.843 5.133 14.325 hybrid contribution 0.322 -1.688 0.549 1.804 sum 12.787 3.156 5.682 14.344 Atomic orbital electron populations 1.21757 0.92227 1.03593 1.00224 1.20900 0.97864 0.94725 0.92921 1.21791 1.00068 0.95787 1.01596 1.22438 0.96496 0.95378 0.85140 1.86484 1.77817 1.57289 1.15837 1.19519 0.86860 0.86745 0.97426 0.89270 1.46323 1.20290 1.05347 1.69493 1.18122 0.78529 0.90075 0.77100 1.90614 1.55992 1.48436 1.50173 1.20899 1.01704 0.92189 1.43497 0.91646 1.25661 0.96293 0.97990 0.93095 1.70023 1.08352 1.32371 1.28685 0.86373 0.79134 0.83244 0.78343 1.18877 1.20205 1.20223 1.20229 0.96140 0.95076 0.95584 1.21033 0.94097 0.98879 0.99331 1.21080 0.94204 0.98980 0.99630 1.21059 0.99464 0.96413 0.97932 1.21082 0.94222 0.99100 0.99457 1.21053 0.94089 0.98795 0.98931 0.94279 0.92282 0.91121 0.93255 0.92988 0.92332 0.93307 0.93860 0.78601 0.78991 0.92224 0.86058 0.86388 0.86582 0.86377 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 6.85 37.16 0.25 -2.35 16 2 C -0.06 -1.12 0.45 -154.51 -0.07 -1.19 16 3 C -0.13 -2.14 7.92 37.16 0.29 -1.85 16 4 C 0.08 1.32 4.67 37.16 0.17 1.49 16 5 O -0.57 -8.66 12.31 -35.23 -0.43 -9.09 16 6 C 0.20 3.78 1.81 -69.08 -0.13 3.66 16 7 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 8 N -0.76 -16.21 4.14 -56.35 -0.23 -16.44 16 9 C 0.56 15.03 6.10 -12.99 -0.08 14.95 16 10 O -0.57 -17.22 12.14 5.20 0.06 -17.15 16 11 C -0.55 -15.00 9.54 -35.63 -0.34 -15.34 16 12 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 13 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 14 N -0.77 -22.48 11.83 55.55 0.66 -21.82 16 15 Si 0.90 19.98 29.56 -169.99 -5.02 14.95 16 16 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 C -0.07 -1.08 3.80 -104.62 -0.40 -1.48 16 20 C -0.12 -1.60 6.83 -39.58 -0.27 -1.87 16 21 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 22 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 23 C -0.12 -1.46 10.05 -39.59 -0.40 -1.85 16 24 C -0.11 -1.55 8.71 -39.59 -0.34 -1.90 16 25 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 26 H 0.06 1.37 7.53 -51.93 -0.39 0.98 16 27 H 0.07 1.76 5.77 -51.93 -0.30 1.46 16 28 H 0.05 0.72 6.64 -51.93 -0.34 0.38 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 31 H 0.05 0.82 7.60 -51.93 -0.39 0.43 16 32 H 0.04 0.62 5.58 -51.93 -0.29 0.33 16 33 H 0.37 3.80 9.12 45.56 0.42 4.21 16 34 H 0.38 7.27 6.86 -40.82 -0.28 6.99 16 35 H 0.27 7.15 8.29 -40.82 -0.34 6.82 16 36 H 0.12 1.62 6.08 -52.49 -0.32 1.30 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.62 8.04 -52.48 -0.42 1.20 16 LS Contribution 318.10 15.07 4.79 4.79 Total: -1.00 -33.01 318.10 -7.12 -40.13 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -4.75 Total: 13.75 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.19 Total: -9.12 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.42 Total: -38.27 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.37 Total: -26.25 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.01 -7.12 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562964586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.984 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds