Wall clock time and date at job start Mon Mar 30 2020 02:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 O 1.42895 * 109.47036 * 299.99442 * 4 2 1 6 6 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 7 7 H 1.09002 * 109.47153 * 60.00555 * 6 2 1 8 8 N 1.46500 * 109.47473 * 300.00312 * 6 2 1 9 9 C 1.34780 * 119.99910 * 85.00011 * 8 6 2 10 10 O 1.21687 * 120.00126 * 359.97438 * 9 8 6 11 11 C 1.46373 * 120.00139 * 180.02562 * 9 8 6 12 12 H 1.08004 * 119.99911 * 359.97438 * 11 9 8 13 13 C 1.40047 * 120.00263 * 180.02562 * 11 9 8 14 14 N 1.30675 * 119.99571 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00242 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47109 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47293 * 119.99692 * 15 13 11 18 18 H 1.48505 * 109.47030 * 239.99776 * 15 13 11 19 19 C 1.50699 * 109.47078 * 180.02562 * 6 2 1 20 20 C 1.38243 * 119.99923 * 79.72852 * 19 6 2 21 21 C 1.38228 * 119.99682 * 179.78691 * 20 19 6 22 22 C 1.38236 * 120.00434 * 0.44400 * 21 20 19 23 23 C 1.38237 * 119.99587 * 359.80584 * 22 21 20 24 24 C 1.38226 * 120.00104 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 26 26 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 27 27 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 31 31 H 1.09001 * 109.46801 * 59.99811 * 4 2 1 32 32 H 1.09001 * 109.46998 * 179.97438 * 4 2 1 33 33 H 0.96700 * 114.00205 * 179.97438 * 5 4 2 34 34 H 0.96998 * 120.00374 * 264.99990 * 8 6 2 35 35 H 0.97003 * 119.99614 * 180.02562 * 14 13 11 36 36 H 1.07995 * 119.99787 * 0.02562 * 20 19 6 37 37 H 1.08002 * 119.99821 * 180.27377 * 21 20 19 38 38 H 1.08001 * 120.00139 * 179.83377 * 22 21 20 39 39 H 1.08002 * 119.99928 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00147 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 1.5636 -0.0476 2.4160 6 6 2.0399 -0.7213 -1.2492 7 1 1.6767 -0.2075 -2.1392 8 7 1.5516 -2.1025 -1.2492 9 6 0.3296 -2.3852 -1.7425 10 8 -0.3683 -1.4931 -2.1875 11 6 -0.1586 -3.7651 -1.7421 12 1 0.4605 -4.5569 -1.3468 13 6 -1.4282 -4.0589 -2.2552 14 7 -2.1771 -3.1010 -2.7339 15 14 -2.0509 -5.8200 -2.2552 16 1 -1.0196 -6.7098 -1.6635 17 1 -3.2975 -5.9043 -1.4527 18 1 -2.3304 -6.2462 -3.6501 19 6 3.5469 -0.7219 -1.2489 20 6 4.2376 -1.6357 -0.4749 21 6 5.6199 -1.6390 -0.4781 22 6 6.3117 -0.7227 -1.2480 23 6 5.6209 0.1944 -2.0179 24 6 4.2387 0.1948 -2.0183 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6764 -1.7489 1.2493 32 1 3.1299 -0.7217 1.2492 33 1 1.8485 -0.4513 3.2472 34 1 2.1076 -2.8136 -0.8942 35 1 -3.0566 -3.3045 -3.0889 36 1 3.6972 -2.3494 0.1291 37 1 6.1595 -2.3558 0.1231 38 1 7.3917 -0.7236 -1.2484 39 1 6.1613 0.9106 -2.6192 40 1 3.6990 0.9116 -2.6195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562964586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:27 Heat of formation + Delta-G solvation = -93.052469 kcal Electronic energy + Delta-G solvation = -22520.849521 eV Core-core repulsion = 19299.196121 eV Total energy + Delta-G solvation = -3221.653399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37664 -39.23467 -38.24546 -36.24852 -34.57666 -33.77628 -31.95218 -31.69204 -28.68763 -27.91447 -27.14947 -26.33655 -23.43006 -22.43249 -21.69794 -19.67453 -19.37278 -18.40459 -17.68651 -17.34125 -16.54662 -16.24021 -15.83392 -15.70746 -15.64052 -15.37450 -14.79404 -14.43576 -14.21803 -13.97664 -13.53253 -13.43534 -13.26758 -13.11464 -13.06140 -12.88054 -12.74379 -12.55881 -12.35348 -12.06796 -11.97337 -11.81535 -11.61523 -11.27799 -10.91732 -10.82063 -9.79200 -9.74099 -9.54123 -9.32582 -8.24986 -6.80670 0.46800 0.54110 1.39030 1.39410 1.56124 2.24727 2.52669 2.87940 3.15791 3.39411 3.65516 3.70356 4.00065 4.07271 4.15604 4.18726 4.21737 4.35028 4.56707 4.59040 4.65603 4.69077 4.78599 4.82954 4.87972 5.03998 5.05894 5.17521 5.19658 5.26015 5.34264 5.40187 5.56848 5.61127 5.66042 5.72718 5.93169 6.15490 6.25926 6.33829 6.91258 6.95683 7.59347 8.55788 8.73758 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.005833 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.090057 B = 4799.328433 C = 5399.355546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.062 4.062 3 C -0.124 4.124 4 C 0.095 3.905 5 O -0.583 6.583 6 C 0.207 3.793 7 H 0.050 0.950 8 N -0.746 5.746 9 C 0.547 3.453 10 O -0.613 6.613 11 C -0.575 4.575 12 H 0.081 0.919 13 C 0.033 3.967 14 N -0.819 5.819 15 Si 0.991 3.009 16 H -0.248 1.248 17 H -0.271 1.271 18 H -0.270 1.270 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.125 4.125 25 H 0.045 0.955 26 H 0.028 0.972 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.392 0.608 34 H 0.390 0.610 35 H 0.272 0.728 36 H 0.123 0.877 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.596 2.562 7.280 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.064 4.064 3 C -0.181 4.181 4 C 0.017 3.983 5 O -0.391 6.391 6 C 0.101 3.899 7 H 0.068 0.932 8 N -0.400 5.400 9 C 0.351 3.649 10 O -0.499 6.499 11 C -0.611 4.611 12 H 0.100 0.900 13 C -0.183 4.183 14 N -0.449 5.449 15 Si 0.811 3.189 16 H -0.171 1.171 17 H -0.196 1.196 18 H -0.195 1.195 19 C -0.090 4.090 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.143 4.143 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.241 0.759 34 H 0.224 0.776 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.658 3.655 6.421 17.313 hybrid contribution -0.555 -1.247 0.178 1.377 sum 15.103 2.408 6.599 16.657 Atomic orbital electron populations 1.21549 0.95423 1.00455 0.98912 1.20844 0.94993 0.96558 0.94014 1.21679 1.01085 0.93977 1.01406 1.22214 0.97570 0.94002 0.84472 1.86423 1.78250 1.57620 1.16770 1.19416 0.89660 0.84581 0.96241 0.93199 1.45957 1.18805 1.07113 1.68145 1.18369 0.79750 0.89926 0.76896 1.90578 1.57712 1.49521 1.52058 1.21423 1.02718 0.92941 1.44066 0.90049 1.26839 0.96199 1.03300 0.91912 1.70191 1.09073 1.35548 1.30076 0.85074 0.78679 0.76532 0.78649 1.17135 1.19561 1.19539 1.19910 0.93557 0.97381 0.98151 1.21101 0.95284 0.98540 0.99369 1.21419 0.93242 0.99354 0.99496 1.21503 1.01210 0.95057 0.96312 1.21393 0.93176 0.99632 0.99440 1.21145 0.95381 0.98782 0.99026 0.93588 0.95326 0.95068 0.91379 0.93548 0.92115 0.94738 0.91400 0.75889 0.77607 0.91836 0.85948 0.83500 0.83254 0.83798 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.86 6.85 71.98 0.49 -4.37 16 2 C -0.06 -2.30 0.45 -52.18 -0.02 -2.32 16 3 C -0.12 -3.92 7.92 71.98 0.57 -3.35 16 4 C 0.09 2.94 4.67 71.98 0.34 3.28 16 5 O -0.58 -16.86 12.31 -148.98 -1.83 -18.69 16 6 C 0.21 8.11 1.81 44.24 0.08 8.19 16 7 H 0.05 2.32 7.44 -2.39 -0.02 2.31 16 8 N -0.75 -33.12 4.14 -450.40 -1.87 -34.99 16 9 C 0.55 31.05 6.10 86.36 0.53 31.58 16 10 O -0.61 -39.68 12.14 -4.31 -0.05 -39.73 16 11 C -0.57 -32.47 9.54 24.83 0.24 -32.23 16 12 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 13 C 0.03 1.82 5.50 85.30 0.47 2.29 16 14 N -0.82 -50.24 11.83 21.84 0.26 -49.98 16 15 Si 0.99 41.43 29.56 68.60 2.03 43.46 16 16 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 19 C -0.09 -2.72 3.80 -19.86 -0.08 -2.80 16 20 C -0.12 -3.19 6.83 22.27 0.15 -3.04 16 21 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 22 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 24 C -0.12 -3.38 8.71 22.27 0.19 -3.18 16 25 H 0.05 1.96 7.68 -2.39 -0.02 1.94 16 26 H 0.03 1.42 7.53 -2.39 -0.02 1.41 16 27 H 0.03 1.64 5.77 -2.39 -0.01 1.63 16 28 H 0.07 1.90 6.64 -2.39 -0.02 1.89 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.89 7.68 -2.39 -0.02 1.87 16 31 H 0.03 1.16 7.60 -2.39 -0.02 1.14 16 32 H 0.07 1.80 5.58 -2.39 -0.01 1.78 16 33 H 0.39 7.19 9.12 -74.06 -0.68 6.51 16 34 H 0.39 15.23 6.86 -92.71 -0.64 14.59 16 35 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 36 H 0.12 3.04 6.08 -2.91 -0.02 3.02 16 37 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.12 3.16 8.04 -2.91 -0.02 3.14 16 Total: -1.00 -76.32 318.10 1.92 -74.41 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -0.25 Total: 37.89 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.63 Total: -12.37 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -1.61 Total: -84.97 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -1.89 Total: -58.42 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -76.32 1.92 -74.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562964586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.646 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds