Wall clock time and date at job start Mon Mar 30 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47372 * 2 1 4 4 C 1.53003 * 109.46727 * 240.00139 * 2 1 3 5 5 O 1.42896 * 109.47008 * 181.77379 * 4 2 1 6 6 C 1.52999 * 109.47042 * 120.00511 * 2 1 3 7 7 H 1.08999 * 109.46955 * 180.35102 * 6 2 1 8 8 N 1.46499 * 109.47197 * 300.34972 * 6 2 1 9 9 C 1.34767 * 120.00340 * 205.82706 * 8 6 2 10 10 O 1.21688 * 119.99853 * 359.97438 * 9 8 6 11 11 C 1.46372 * 120.00438 * 179.97438 * 9 8 6 12 12 H 1.08000 * 119.99823 * 359.97438 * 11 9 8 13 13 C 1.40049 * 120.00390 * 180.02562 * 11 9 8 14 14 N 1.30672 * 119.99846 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00172 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47348 * 89.99620 * 15 13 11 17 17 H 1.48502 * 109.47050 * 210.00092 * 15 13 11 18 18 H 1.48502 * 109.46656 * 329.99712 * 15 13 11 19 19 C 1.50699 * 109.47069 * 60.35006 * 6 2 1 20 20 C 1.38241 * 120.00131 * 100.00228 * 19 6 2 21 21 C 1.38223 * 119.99974 * 179.97438 * 20 19 6 22 22 C 1.38240 * 120.00345 * 359.95337 * 21 20 19 23 23 C 1.38235 * 119.99851 * 0.02562 * 22 21 20 24 24 C 1.38234 * 119.99824 * 0.06659 * 23 22 21 25 25 H 1.09001 * 109.46945 * 299.99861 * 1 2 3 26 26 H 1.09000 * 109.47231 * 59.99241 * 1 2 3 27 27 H 1.08996 * 109.47593 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46815 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47397 * 300.00115 * 3 2 1 30 30 H 1.09001 * 109.46972 * 60.00156 * 3 2 1 31 31 H 1.09001 * 109.47168 * 301.77484 * 4 2 1 32 32 H 1.09001 * 109.47286 * 61.77383 * 4 2 1 33 33 H 0.96702 * 114.00383 * 180.02562 * 5 4 2 34 34 H 0.97002 * 119.99718 * 25.82008 * 8 6 2 35 35 H 0.97000 * 120.00101 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.99767 * 359.97438 * 20 19 6 37 37 H 1.08009 * 120.00371 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00045 * 179.71738 * 22 21 20 39 39 H 1.07995 * 120.00191 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.99654 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 3.4682 -0.7575 -1.2287 6 6 2.0400 -0.7214 1.2492 7 1 3.1299 -0.7159 1.2523 8 7 1.5448 -0.0358 2.4454 9 6 2.2276 -0.1239 3.6039 10 8 3.2553 -0.7734 3.6565 11 6 1.7331 0.5615 4.7990 12 1 0.8213 1.1383 4.7522 13 6 2.4430 0.4703 6.0028 14 7 3.5466 -0.2271 6.0592 15 14 1.8115 1.3446 7.5280 16 1 0.9079 0.4375 8.2801 17 1 2.9587 1.7269 8.3901 18 1 1.0661 2.5645 7.1263 19 6 1.5447 -2.1446 1.2447 20 6 2.3813 -3.1663 0.8355 21 6 1.9271 -4.4718 0.8319 22 6 0.6368 -4.7560 1.2384 23 6 -0.1996 -3.7344 1.6480 24 6 0.2539 -2.4286 1.6498 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4423 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6508 -1.7393 -1.2654 32 1 1.7027 -0.1894 -2.1390 33 1 3.8616 -1.2009 -1.9928 34 1 0.7254 0.4818 2.4035 35 1 4.0381 -0.2906 6.8931 36 1 3.3896 -2.9444 0.5186 37 1 2.5806 -5.2701 0.5118 38 1 0.2805 -5.7755 1.2313 39 1 -1.2078 -3.9563 1.9652 40 1 -0.3997 -1.6305 1.9694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562964587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:30 Heat of formation + Delta-G solvation = -70.541448 kcal Electronic energy + Delta-G solvation = -22545.819054 eV Core-core repulsion = 19325.141806 eV Total energy + Delta-G solvation = -3220.677248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85911 -37.58535 -36.75108 -35.01730 -32.55139 -31.72269 -30.61394 -30.29566 -27.06658 -26.54401 -25.97874 -24.58164 -22.01395 -21.18533 -19.69426 -18.48366 -17.30543 -17.19787 -16.28104 -15.41056 -15.23359 -14.88661 -14.64212 -14.27635 -13.86971 -13.53340 -13.20714 -13.14591 -12.73288 -12.43379 -12.31373 -12.14194 -11.93020 -11.79443 -11.55836 -11.23018 -11.08955 -10.96683 -10.61357 -10.48671 -10.41925 -10.27379 -10.23310 -10.08125 -9.73957 -8.80561 -8.41434 -8.20003 -7.51260 -7.44842 -6.12122 -4.57777 1.85277 1.88070 3.16928 3.23568 3.26693 4.13645 4.23204 4.39588 4.65348 4.79146 5.04452 5.15618 5.28755 5.34887 5.38043 5.47675 5.57907 5.61961 5.70384 5.78659 5.86854 5.94611 6.02453 6.06811 6.14450 6.21198 6.32019 6.40914 6.45387 6.50265 6.67491 6.76473 6.92877 6.96208 7.23290 7.48390 7.49209 7.77844 7.99172 8.17613 8.39024 9.08482 9.61109 10.67286 10.87454 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.006331 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.834093 B = 4421.836026 C = 5139.812690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.064 4.064 3 C -0.133 4.133 4 C 0.089 3.911 5 O -0.562 6.562 6 C 0.205 3.795 7 H 0.094 0.906 8 N -0.757 5.757 9 C 0.558 3.442 10 O -0.574 6.574 11 C -0.546 4.546 12 H 0.065 0.935 13 C 0.088 3.912 14 N -0.767 5.767 15 Si 0.905 3.095 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.066 4.066 20 C -0.105 4.105 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.102 4.102 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.372 0.628 34 H 0.377 0.623 35 H 0.267 0.733 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 -2.661 -13.976 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.190 4.190 4 C 0.011 3.989 5 O -0.366 6.366 6 C 0.098 3.902 7 H 0.112 0.888 8 N -0.411 5.411 9 C 0.361 3.639 10 O -0.456 6.456 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.131 4.131 14 N -0.396 5.396 15 Si 0.730 3.270 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.068 4.068 20 C -0.123 4.123 21 C -0.147 4.147 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.120 4.120 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.218 0.782 34 H 0.210 0.790 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.906 -2.861 -13.233 14.771 hybrid contribution -0.696 0.240 0.340 0.811 sum -6.602 -2.621 -12.893 14.720 Atomic orbital electron populations 1.22017 0.94199 1.02586 1.01858 1.20758 0.95312 0.96306 0.94108 1.21735 1.02049 0.94097 1.01117 1.22195 0.81195 0.98926 0.96613 1.86572 1.19615 1.81698 1.48759 1.19386 0.99777 0.86281 0.84740 0.88808 1.46263 1.29182 1.56090 1.09615 1.18171 0.83221 0.80916 0.81549 1.90607 1.25711 1.45072 1.84254 1.20860 1.10451 1.33438 0.93562 0.91654 1.25680 0.93943 0.93903 0.99590 1.70025 1.12390 1.31023 1.26155 0.86426 0.78920 0.80171 0.81532 1.19845 1.20517 1.18978 1.20508 0.93442 0.96803 0.96057 1.21047 0.99424 0.92292 0.99573 1.21029 0.95904 0.96407 1.01328 1.20976 0.94524 0.98516 1.01196 1.21046 0.99539 0.93172 1.00983 1.21000 0.95947 0.96241 0.98809 0.91660 0.92856 0.91596 0.91867 0.93544 0.91928 0.93448 0.94158 0.78217 0.79037 0.92232 0.86243 0.86873 0.87023 0.86849 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 7.23 37.16 0.27 -1.63 16 2 C -0.06 -0.96 0.43 -154.51 -0.07 -1.02 16 3 C -0.13 -2.01 8.19 37.16 0.30 -1.70 16 4 C 0.09 1.14 5.44 37.16 0.20 1.35 16 5 O -0.56 -7.56 12.32 -35.23 -0.43 -8.00 16 6 C 0.20 4.00 1.37 -69.08 -0.09 3.90 16 7 H 0.09 2.21 6.92 -51.93 -0.36 1.85 16 8 N -0.76 -16.73 3.53 -56.35 -0.20 -16.92 16 9 C 0.56 15.88 7.71 -12.99 -0.10 15.78 16 10 O -0.57 -18.81 14.67 5.20 0.08 -18.73 16 11 C -0.55 -15.54 9.54 -35.63 -0.34 -15.88 16 12 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 13 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 14 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16 15 Si 0.90 20.49 29.56 -169.99 -5.02 15.46 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 C -0.07 -1.24 3.77 -104.62 -0.39 -1.63 16 20 C -0.10 -1.86 8.75 -39.59 -0.35 -2.21 16 21 C -0.13 -2.01 10.05 -39.59 -0.40 -2.41 16 22 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 23 C -0.13 -2.03 10.05 -39.58 -0.40 -2.42 16 24 C -0.10 -1.77 7.12 -39.58 -0.28 -2.06 16 25 H 0.06 0.84 6.48 -51.93 -0.34 0.50 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.84 5.60 -51.93 -0.29 0.55 16 28 H 0.06 1.07 7.73 -51.93 -0.40 0.67 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.00 7.49 -51.93 -0.39 0.62 16 31 H 0.05 0.61 6.75 -51.93 -0.35 0.26 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.37 3.17 9.12 45.56 0.42 3.58 16 34 H 0.38 7.37 6.66 -40.82 -0.27 7.10 16 35 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 36 H 0.12 2.09 8.04 -52.49 -0.42 1.67 16 37 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.12 2.00 6.88 -52.49 -0.36 1.64 16 LS Contribution 324.82 15.07 4.90 4.90 Total: -1.00 -35.65 324.82 -7.02 -42.67 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -4.85 Total: 13.33 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.14 Total: -9.93 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.46 Total: -39.69 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.36 Total: -26.73 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.65 -7.02 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562964587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.874 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds