Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47372 * 2 1 4 4 C 1.53003 * 109.46727 * 240.00139 * 2 1 3 5 5 O 1.42896 * 109.47008 * 181.77379 * 4 2 1 6 6 C 1.52999 * 109.47042 * 120.00511 * 2 1 3 7 7 H 1.08999 * 109.46955 * 180.35102 * 6 2 1 8 8 N 1.46499 * 109.47197 * 300.34972 * 6 2 1 9 9 C 1.34767 * 120.00340 * 205.82706 * 8 6 2 10 10 O 1.21688 * 119.99853 * 359.97438 * 9 8 6 11 11 C 1.46372 * 120.00438 * 179.97438 * 9 8 6 12 12 H 1.08000 * 119.99823 * 359.97438 * 11 9 8 13 13 C 1.40049 * 120.00390 * 180.02562 * 11 9 8 14 14 N 1.30672 * 119.99846 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00172 * 180.02562 * 13 11 9 16 16 H 1.48491 * 109.47348 * 89.99620 * 15 13 11 17 17 H 1.48502 * 109.47050 * 210.00092 * 15 13 11 18 18 H 1.48502 * 109.46656 * 329.99712 * 15 13 11 19 19 C 1.50699 * 109.47069 * 60.35006 * 6 2 1 20 20 C 1.38241 * 120.00131 * 100.00228 * 19 6 2 21 21 C 1.38223 * 119.99974 * 179.97438 * 20 19 6 22 22 C 1.38240 * 120.00345 * 359.95337 * 21 20 19 23 23 C 1.38235 * 119.99851 * 0.02562 * 22 21 20 24 24 C 1.38234 * 119.99824 * 0.06659 * 23 22 21 25 25 H 1.09001 * 109.46945 * 299.99861 * 1 2 3 26 26 H 1.09000 * 109.47231 * 59.99241 * 1 2 3 27 27 H 1.08996 * 109.47593 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46815 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47397 * 300.00115 * 3 2 1 30 30 H 1.09001 * 109.46972 * 60.00156 * 3 2 1 31 31 H 1.09001 * 109.47168 * 301.77484 * 4 2 1 32 32 H 1.09001 * 109.47286 * 61.77383 * 4 2 1 33 33 H 0.96702 * 114.00383 * 180.02562 * 5 4 2 34 34 H 0.97002 * 119.99718 * 25.82008 * 8 6 2 35 35 H 0.97000 * 120.00101 * 180.02562 * 14 13 11 36 36 H 1.08000 * 119.99767 * 359.97438 * 20 19 6 37 37 H 1.08009 * 120.00371 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00045 * 179.71738 * 22 21 20 39 39 H 1.07995 * 120.00191 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.99654 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 3.4682 -0.7575 -1.2287 6 6 2.0400 -0.7214 1.2492 7 1 3.1299 -0.7159 1.2523 8 7 1.5448 -0.0358 2.4454 9 6 2.2276 -0.1239 3.6039 10 8 3.2553 -0.7734 3.6565 11 6 1.7331 0.5615 4.7990 12 1 0.8213 1.1383 4.7522 13 6 2.4430 0.4703 6.0028 14 7 3.5466 -0.2271 6.0592 15 14 1.8115 1.3446 7.5280 16 1 0.9079 0.4375 8.2801 17 1 2.9587 1.7269 8.3901 18 1 1.0661 2.5645 7.1263 19 6 1.5447 -2.1446 1.2447 20 6 2.3813 -3.1663 0.8355 21 6 1.9271 -4.4718 0.8319 22 6 0.6368 -4.7560 1.2384 23 6 -0.1996 -3.7344 1.6480 24 6 0.2539 -2.4286 1.6498 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4423 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6508 -1.7393 -1.2654 32 1 1.7027 -0.1894 -2.1390 33 1 3.8616 -1.2009 -1.9928 34 1 0.7254 0.4818 2.4035 35 1 4.0381 -0.2906 6.8931 36 1 3.3896 -2.9444 0.5186 37 1 2.5806 -5.2701 0.5118 38 1 0.2805 -5.7755 1.2313 39 1 -1.2078 -3.9563 1.9652 40 1 -0.3997 -1.6305 1.9694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562964587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = -96.750026 kcal Electronic energy + Delta-G solvation = -22546.955543 eV Core-core repulsion = 19325.141806 eV Total energy + Delta-G solvation = -3221.813738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25047 -39.02830 -38.43817 -36.39331 -34.64097 -33.47169 -32.00342 -31.67070 -28.70331 -28.05926 -27.15064 -26.14538 -23.31592 -22.59785 -21.55023 -19.97502 -19.09849 -18.27567 -17.65855 -17.46650 -16.60372 -16.24694 -16.18192 -15.67696 -15.24903 -15.02446 -14.72655 -14.53446 -14.19191 -14.01513 -13.87632 -13.43286 -13.29660 -13.14451 -12.93937 -12.83628 -12.73868 -12.57345 -12.39531 -12.03505 -11.86347 -11.73506 -11.55264 -11.43156 -10.92024 -10.79128 -9.84055 -9.70685 -9.52087 -9.33918 -8.25836 -6.82401 0.55629 0.58530 1.38534 1.40686 1.55306 2.24695 2.51670 2.91742 3.19184 3.40494 3.64485 3.86459 3.98150 4.00601 4.11206 4.22138 4.31520 4.41139 4.53587 4.62001 4.65637 4.74655 4.78078 4.83712 4.89383 5.03038 5.06713 5.15937 5.21876 5.26250 5.33030 5.34877 5.50096 5.66531 5.67207 5.80884 5.94831 6.21474 6.28163 6.37728 6.89468 6.99641 7.61646 8.55589 8.73167 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.006331 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.834093 B = 4421.836026 C = 5139.812690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.129 4.129 4 C 0.093 3.907 5 O -0.588 6.588 6 C 0.210 3.790 7 H 0.041 0.959 8 N -0.741 5.741 9 C 0.544 3.456 10 O -0.629 6.629 11 C -0.574 4.574 12 H 0.085 0.915 13 C 0.028 3.972 14 N -0.823 5.823 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.248 1.248 19 C -0.086 4.086 20 C -0.127 4.127 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.117 4.117 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.392 0.608 34 H 0.391 0.609 35 H 0.272 0.728 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 -2.753 -14.515 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 C -0.186 4.186 4 C 0.015 3.985 5 O -0.395 6.395 6 C 0.104 3.896 7 H 0.059 0.941 8 N -0.395 5.395 9 C 0.348 3.652 10 O -0.516 6.516 11 C -0.611 4.611 12 H 0.104 0.896 13 C -0.186 4.186 14 N -0.453 5.453 15 Si 0.815 3.185 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.171 1.171 19 C -0.088 4.088 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.135 4.135 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.241 0.759 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.693 -2.946 -13.842 16.608 hybrid contribution 0.191 0.206 0.414 0.501 sum -8.502 -2.740 -13.428 16.127 Atomic orbital electron populations 1.21974 0.91940 1.03066 1.03090 1.20796 0.97074 0.95584 0.92806 1.21701 1.00275 0.94676 1.01975 1.22181 0.80880 0.99062 0.96372 1.86545 1.20314 1.82198 1.50464 1.19353 0.96795 0.87937 0.85517 0.94100 1.45859 1.28843 1.55654 1.09111 1.18520 0.82894 0.80446 0.83368 1.90560 1.28101 1.47346 1.85582 1.21415 1.11426 1.33935 0.94291 0.89642 1.26951 0.93711 0.94285 1.03683 1.70212 1.14364 1.33073 1.27612 0.85062 0.78423 0.79136 0.75920 1.18682 1.19949 1.17115 1.20426 0.94475 0.96103 0.97770 1.21115 0.99032 0.93511 1.00876 1.21356 0.96894 0.95945 1.00570 1.21408 0.93836 1.00111 0.99525 1.21425 1.00999 0.92406 1.00020 1.21109 0.95467 0.97520 0.99415 0.92171 0.89805 0.91494 0.94618 0.90212 0.93419 0.93407 0.91047 0.75937 0.77445 0.91822 0.87492 0.84328 0.83504 0.83995 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 7.23 71.98 0.52 -2.87 16 2 C -0.06 -1.84 0.43 -52.18 -0.02 -1.86 16 3 C -0.13 -3.91 8.19 71.98 0.59 -3.32 16 4 C 0.09 2.31 5.44 71.98 0.39 2.70 16 5 O -0.59 -16.21 12.32 -148.98 -1.84 -18.05 16 6 C 0.21 8.59 1.37 44.24 0.06 8.65 16 7 H 0.04 2.10 6.92 -2.39 -0.02 2.08 16 8 N -0.74 -34.07 3.53 -450.42 -1.59 -35.66 16 9 C 0.54 32.42 7.71 86.36 0.67 33.09 16 10 O -0.63 -43.81 14.67 -4.31 -0.06 -43.88 16 11 C -0.57 -33.32 9.54 24.83 0.24 -33.09 16 12 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 13 C 0.03 1.63 5.50 85.30 0.47 2.10 16 14 N -0.82 -52.08 11.83 21.84 0.26 -51.82 16 15 Si 1.00 42.13 29.56 68.60 2.03 44.16 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 18 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 19 C -0.09 -3.29 3.77 -19.86 -0.07 -3.37 16 20 C -0.13 -4.62 8.75 22.27 0.19 -4.43 16 21 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 22 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 23 C -0.13 -3.81 10.05 22.27 0.22 -3.58 16 24 C -0.12 -4.01 7.12 22.27 0.16 -3.86 16 25 H 0.06 1.46 6.48 -2.39 -0.02 1.45 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.59 5.60 -2.39 -0.01 1.58 16 28 H 0.03 1.25 7.73 -2.39 -0.02 1.23 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.55 7.49 -2.39 -0.02 1.53 16 31 H 0.05 1.18 6.75 -2.39 -0.02 1.17 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.39 6.70 9.12 -74.06 -0.68 6.02 16 34 H 0.39 15.58 6.66 -92.71 -0.62 14.96 16 35 H 0.27 15.65 8.29 -92.71 -0.77 14.88 16 36 H 0.11 4.03 8.04 -2.91 -0.02 4.01 16 37 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.12 3.97 6.88 -2.91 -0.02 3.95 16 Total: -1.00 -82.54 324.82 2.43 -80.11 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -0.23 Total: 42.02 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 3.86 Total: -16.88 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -1.33 Total: -87.48 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.90 Total: -61.93 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -82.54 2.43 -80.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562964587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.636 kcal (2) G-P(sol) polarization free energy of solvation -82.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds