Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47164 * 2 1 4 4 H 1.08999 * 109.47402 * 54.99798 * 3 2 1 5 5 C 1.52999 * 109.47324 * 294.99737 * 3 2 1 6 6 C 1.53004 * 109.47376 * 175.00095 * 3 2 1 7 7 H 1.08997 * 109.47051 * 59.04238 * 6 3 2 8 8 O 1.42908 * 109.46846 * 299.04221 * 6 3 2 9 9 C 1.50696 * 109.47203 * 179.04787 * 6 3 2 10 10 O 1.21286 * 120.00361 * 110.69798 * 9 6 3 11 11 N 1.34782 * 119.99684 * 290.69244 * 9 6 3 12 12 C 1.39128 * 119.99860 * 183.35583 * 11 9 6 13 13 C 1.38647 * 120.28648 * 334.07424 * 12 11 9 14 14 C 1.38220 * 120.03216 * 180.29494 * 13 12 11 15 15 C 1.38868 * 120.61693 * 359.44747 * 14 13 12 16 16 C 1.36462 * 120.57681 * 0.55698 * 15 14 13 17 17 C 1.40739 * 119.94365 * 359.71794 * 16 15 14 18 18 C 1.41070 * 120.30429 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00366 * 149.71212 * 18 17 16 20 20 C 1.39960 * 119.99384 * 329.70720 * 18 17 16 21 21 N 1.30851 * 120.00431 * 346.10791 * 20 18 17 22 22 Si 1.86804 * 119.99522 * 166.10672 * 20 18 17 23 23 H 1.48504 * 109.47043 * 60.00624 * 22 20 18 24 24 H 1.48503 * 109.47169 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47344 * 300.00051 * 22 20 18 26 26 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47226 * 300.00071 * 1 2 3 28 28 H 1.09002 * 109.46900 * 59.99804 * 1 2 3 29 29 H 1.08994 * 109.47356 * 239.99634 * 2 1 3 30 30 H 1.09006 * 109.47262 * 119.99542 * 2 1 3 31 31 H 1.09006 * 109.46627 * 54.13956 * 5 3 2 32 32 H 1.08999 * 109.47730 * 174.13862 * 5 3 2 33 33 H 1.08996 * 109.47334 * 294.14155 * 5 3 2 34 34 H 0.96693 * 113.99931 * 299.99784 * 8 6 3 35 35 H 0.96991 * 119.99919 * 3.35756 * 11 9 6 36 36 H 1.08001 * 119.98021 * 0.02562 * 13 12 11 37 37 H 1.07998 * 119.69110 * 179.69890 * 14 13 12 38 38 H 1.07996 * 119.71003 * 180.30042 * 15 14 13 39 39 H 1.07998 * 120.03110 * 179.75002 * 16 15 14 40 40 H 0.97001 * 119.99954 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1257 7 1 3.9987 0.8908 -0.7070 8 8 3.9420 0.8253 1.3573 9 6 4.0691 2.8642 0.1022 10 8 4.5398 3.3574 1.1053 11 7 3.9970 3.5862 -1.0337 12 6 4.5257 4.8724 -1.0751 13 6 4.6327 5.6222 0.0862 14 6 5.1531 6.9018 0.0381 15 6 5.5834 7.4455 -1.1651 16 6 5.4895 6.7298 -2.3232 17 6 4.9582 5.4267 -2.3027 18 6 4.8582 4.6799 -3.4953 19 1 4.9321 3.6030 -3.4659 20 6 4.6631 5.3350 -4.7167 21 7 4.3039 6.5931 -4.7344 22 14 4.9153 4.4129 -6.3217 23 1 3.9834 3.2582 -6.3809 24 1 4.6470 5.3239 -7.4634 25 1 6.3153 3.9236 -6.3967 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 0.5583 2.0337 -1.4477 32 1 1.9065 3.1814 -1.2647 33 1 2.1526 1.6518 -2.1411 34 1 3.5904 1.2661 2.1428 35 1 3.5766 3.2090 -1.8222 36 1 4.3053 5.2077 1.0283 37 1 5.2294 7.4827 0.9453 38 1 5.9921 8.4449 -1.1851 39 1 5.8232 7.1628 -3.2547 40 1 4.1691 7.0471 -5.5810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580843881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = -78.486253 kcal Electronic energy + Delta-G solvation = -21983.914874 eV Core-core repulsion = 18762.893113 eV Total energy + Delta-G solvation = -3221.021761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19353 -37.89627 -36.63996 -35.12137 -33.71787 -33.67094 -30.49116 -29.63085 -28.34913 -26.68840 -25.29366 -24.06827 -21.69399 -20.86067 -20.32708 -19.54636 -17.76943 -17.19413 -16.50492 -16.00832 -15.52453 -15.12251 -14.51460 -14.34564 -14.11096 -13.90427 -13.55900 -12.99973 -12.77147 -12.70248 -12.48680 -12.13648 -11.82710 -11.76941 -11.63765 -11.48274 -11.34766 -11.22551 -10.96095 -10.78085 -10.67099 -10.55184 -10.35175 -10.03420 -9.73696 -9.30571 -9.26154 -8.59707 -7.40422 -7.00418 -6.71279 -4.43796 2.54603 2.83303 3.01039 3.02927 3.17832 3.36856 3.79715 3.85920 4.36058 4.59366 4.68760 4.75583 4.94636 5.21930 5.28897 5.38591 5.48752 5.56051 5.61147 5.68111 5.88118 5.90371 5.99500 6.06491 6.26212 6.32235 6.37287 6.49801 6.58443 6.87301 7.02712 7.11216 7.25646 7.56809 7.62205 7.67763 7.92347 8.06722 8.08627 8.38819 8.51631 8.76526 8.79254 8.97288 10.14078 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.006233 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.104968 B = 4490.783356 C = 5818.649801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.117 4.117 4 H 0.077 0.923 5 C -0.172 4.172 6 C 0.097 3.903 7 H 0.120 0.880 8 O -0.539 6.539 9 C 0.468 3.532 10 O -0.536 6.536 11 N -0.630 5.630 12 C 0.014 3.986 13 C -0.100 4.100 14 C -0.222 4.222 15 C -0.116 4.116 16 C -0.145 4.145 17 C 0.103 3.897 18 C -0.475 4.475 19 H 0.074 0.926 20 C 0.079 3.921 21 N -0.796 5.796 22 Si 0.906 3.094 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.264 1.264 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.381 0.619 35 H 0.407 0.593 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.367 -9.049 2.964 11.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.136 4.136 4 H 0.096 0.904 5 C -0.229 4.229 6 C 0.034 3.966 7 H 0.137 0.863 8 O -0.344 6.344 9 C 0.254 3.746 10 O -0.415 6.415 11 N -0.276 5.276 12 C -0.080 4.080 13 C -0.120 4.120 14 C -0.242 4.242 15 C -0.135 4.135 16 C -0.165 4.165 17 C 0.099 3.901 18 C -0.505 4.505 19 H 0.092 0.908 20 C -0.138 4.138 21 N -0.421 5.421 22 Si 0.731 3.269 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.189 1.189 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.229 0.771 35 H 0.246 0.754 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.804 -8.972 3.096 11.125 hybrid contribution -0.358 0.014 -0.960 1.025 sum -6.163 -8.958 2.136 11.081 Atomic orbital electron populations 1.21840 0.95877 1.01420 1.01987 1.21491 0.95643 0.95308 1.02717 1.21782 0.94098 0.97708 0.99987 0.90443 1.22222 1.02511 1.01981 0.96235 1.21935 0.94326 0.91090 0.89207 0.86293 1.86537 1.77689 1.54995 1.15149 1.21441 0.80264 0.88589 0.84278 1.90595 1.45862 1.71182 1.33862 1.43355 1.55768 1.14615 1.13819 1.17885 1.08736 0.85773 0.95642 1.20979 1.00246 0.93492 0.97235 1.20364 1.10809 0.96464 0.96543 1.20482 1.01266 0.98195 0.93530 1.20815 1.03089 0.95723 0.96834 1.17368 0.89308 0.92887 0.90538 1.19233 1.45897 0.94495 0.90853 0.90790 1.25821 0.92212 0.94871 1.00941 1.69798 1.32635 1.10832 1.28872 0.86400 0.80056 0.80061 0.80405 1.19034 1.20314 1.18878 0.92879 0.92867 0.92346 0.91770 0.91148 0.91400 0.90655 0.91845 0.77092 0.75408 0.85984 0.89194 0.89384 0.86556 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.68 37.16 0.36 -0.99 16 2 C -0.11 -1.12 5.33 -26.73 -0.14 -1.27 16 3 C -0.12 -1.35 2.15 -90.62 -0.20 -1.55 16 4 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 5 C -0.17 -2.07 7.60 37.16 0.28 -1.79 16 6 C 0.10 1.37 3.03 -27.88 -0.08 1.29 16 7 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 8 O -0.54 -7.68 12.31 -54.97 -0.68 -8.35 16 9 C 0.47 8.76 6.80 -10.99 -0.07 8.68 16 10 O -0.54 -11.76 13.25 -14.18 -0.19 -11.95 16 11 N -0.63 -12.63 3.86 -9.47 -0.04 -12.67 16 12 C 0.01 0.33 6.48 -83.17 -0.54 -0.21 16 13 C -0.10 -2.41 8.77 -39.44 -0.35 -2.76 16 14 C -0.22 -5.20 10.04 -39.36 -0.39 -5.60 16 15 C -0.12 -2.75 9.97 -39.99 -0.40 -3.15 16 16 C -0.14 -3.70 8.60 -39.28 -0.34 -4.04 16 17 C 0.10 2.63 5.53 -106.65 -0.59 2.04 16 18 C -0.47 -11.69 8.28 -37.86 -0.31 -12.00 16 19 H 0.07 1.71 7.32 -52.49 -0.38 1.33 16 20 C 0.08 1.88 5.18 -17.32 -0.09 1.79 16 21 N -0.80 -19.69 11.12 55.55 0.62 -19.07 16 22 Si 0.91 17.72 29.58 -169.99 -5.03 12.69 16 23 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 24 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.51 6.44 -51.93 -0.33 0.17 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.71 7.57 -51.93 -0.39 0.31 16 31 H 0.07 0.72 6.31 -51.93 -0.33 0.39 16 32 H 0.07 1.09 5.74 -51.93 -0.30 0.80 16 33 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 34 H 0.38 4.61 8.74 45.56 0.40 5.00 16 35 H 0.41 7.39 5.12 -40.82 -0.21 7.18 16 36 H 0.12 2.93 5.57 -52.49 -0.29 2.63 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.12 3.04 6.45 -52.49 -0.34 2.70 16 40 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -28.81 321.19 -8.02 -36.83 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -4.68 Total: 17.23 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -2.86 Total: -19.54 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.58 Total: -31.74 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.86 Total: -20.30 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.81 -8.02 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580843881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.656 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds