Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47164 * 2 1 4 4 H 1.08999 * 109.47402 * 54.99798 * 3 2 1 5 5 C 1.52999 * 109.47324 * 294.99737 * 3 2 1 6 6 C 1.53004 * 109.47376 * 175.00095 * 3 2 1 7 7 H 1.08997 * 109.47051 * 59.04238 * 6 3 2 8 8 O 1.42908 * 109.46846 * 299.04221 * 6 3 2 9 9 C 1.50696 * 109.47203 * 179.04787 * 6 3 2 10 10 O 1.21286 * 120.00361 * 110.69798 * 9 6 3 11 11 N 1.34782 * 119.99684 * 290.69244 * 9 6 3 12 12 C 1.39128 * 119.99860 * 183.35583 * 11 9 6 13 13 C 1.38647 * 120.28648 * 334.07424 * 12 11 9 14 14 C 1.38220 * 120.03216 * 180.29494 * 13 12 11 15 15 C 1.38868 * 120.61693 * 359.44747 * 14 13 12 16 16 C 1.36462 * 120.57681 * 0.55698 * 15 14 13 17 17 C 1.40739 * 119.94365 * 359.71794 * 16 15 14 18 18 C 1.41070 * 120.30429 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00366 * 149.71212 * 18 17 16 20 20 C 1.39960 * 119.99384 * 329.70720 * 18 17 16 21 21 N 1.30851 * 120.00431 * 346.10791 * 20 18 17 22 22 Si 1.86804 * 119.99522 * 166.10672 * 20 18 17 23 23 H 1.48504 * 109.47043 * 60.00624 * 22 20 18 24 24 H 1.48503 * 109.47169 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47344 * 300.00051 * 22 20 18 26 26 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47226 * 300.00071 * 1 2 3 28 28 H 1.09002 * 109.46900 * 59.99804 * 1 2 3 29 29 H 1.08994 * 109.47356 * 239.99634 * 2 1 3 30 30 H 1.09006 * 109.47262 * 119.99542 * 2 1 3 31 31 H 1.09006 * 109.46627 * 54.13956 * 5 3 2 32 32 H 1.08999 * 109.47730 * 174.13862 * 5 3 2 33 33 H 1.08996 * 109.47334 * 294.14155 * 5 3 2 34 34 H 0.96693 * 113.99931 * 299.99784 * 8 6 3 35 35 H 0.96991 * 119.99919 * 3.35756 * 11 9 6 36 36 H 1.08001 * 119.98021 * 0.02562 * 13 12 11 37 37 H 1.07998 * 119.69110 * 179.69890 * 14 13 12 38 38 H 1.07996 * 119.71003 * 180.30042 * 15 14 13 39 39 H 1.07998 * 120.03110 * 179.75002 * 16 15 14 40 40 H 0.97001 * 119.99954 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1257 7 1 3.9987 0.8908 -0.7070 8 8 3.9420 0.8253 1.3573 9 6 4.0691 2.8642 0.1022 10 8 4.5398 3.3574 1.1053 11 7 3.9970 3.5862 -1.0337 12 6 4.5257 4.8724 -1.0751 13 6 4.6327 5.6222 0.0862 14 6 5.1531 6.9018 0.0381 15 6 5.5834 7.4455 -1.1651 16 6 5.4895 6.7298 -2.3232 17 6 4.9582 5.4267 -2.3027 18 6 4.8582 4.6799 -3.4953 19 1 4.9321 3.6030 -3.4659 20 6 4.6631 5.3350 -4.7167 21 7 4.3039 6.5931 -4.7344 22 14 4.9153 4.4129 -6.3217 23 1 3.9834 3.2582 -6.3809 24 1 4.6470 5.3239 -7.4634 25 1 6.3153 3.9236 -6.3967 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 0.5583 2.0337 -1.4477 32 1 1.9065 3.1814 -1.2647 33 1 2.1526 1.6518 -2.1411 34 1 3.5904 1.2661 2.1428 35 1 3.5766 3.2090 -1.8222 36 1 4.3053 5.2077 1.0283 37 1 5.2294 7.4827 0.9453 38 1 5.9921 8.4449 -1.1851 39 1 5.8232 7.1628 -3.2547 40 1 4.1691 7.0471 -5.5810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580843881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = -95.064401 kcal Electronic energy + Delta-G solvation = -21984.633756 eV Core-core repulsion = 18762.893113 eV Total energy + Delta-G solvation = -3221.740643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.67954 -39.45640 -38.06314 -36.30644 -35.50069 -35.20306 -31.68410 -31.42558 -29.90442 -27.88830 -27.06248 -25.11200 -23.42496 -22.50554 -21.32340 -21.14697 -19.35682 -18.87589 -18.00226 -17.45014 -16.89584 -16.60383 -16.05305 -15.69047 -15.44761 -15.12544 -14.78312 -14.50797 -14.45492 -14.22592 -13.73102 -13.53320 -13.28490 -13.06069 -12.89129 -12.76583 -12.69249 -12.59092 -12.39474 -12.16125 -12.06154 -11.63998 -11.51421 -11.47239 -11.34818 -11.06384 -10.98483 -10.18173 -9.31891 -8.82010 -8.51206 -6.32031 0.80485 1.04646 1.42186 1.51768 1.54947 1.74701 2.21944 2.33582 2.77840 3.25307 3.62583 3.69946 3.78595 3.89621 4.15415 4.34011 4.51471 4.52319 4.60588 4.63754 4.70458 4.75541 4.78303 5.02566 5.06209 5.12700 5.16575 5.20868 5.26800 5.27245 5.43135 5.43365 5.55834 5.78353 5.80728 6.09358 6.16865 6.24250 6.50949 6.64600 6.73787 6.93710 7.00116 7.32470 8.37230 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.006233 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.104968 B = 4490.783356 C = 5818.649801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.106 4.106 4 H 0.074 0.926 5 C -0.172 4.172 6 C 0.109 3.891 7 H 0.135 0.865 8 O -0.544 6.544 9 C 0.465 3.535 10 O -0.571 6.571 11 N -0.628 5.628 12 C 0.007 3.993 13 C -0.116 4.116 14 C -0.227 4.227 15 C -0.121 4.121 16 C -0.168 4.168 17 C 0.075 3.925 18 C -0.494 4.494 19 H 0.082 0.918 20 C 0.041 3.959 21 N -0.827 5.827 22 Si 0.977 3.023 23 H -0.251 1.251 24 H -0.273 1.273 25 H -0.266 1.266 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.390 0.610 35 H 0.415 0.585 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 -10.879 2.314 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.093 0.907 5 C -0.229 4.229 6 C 0.047 3.953 7 H 0.152 0.848 8 O -0.350 6.350 9 C 0.254 3.746 10 O -0.451 6.451 11 N -0.274 5.274 12 C -0.088 4.088 13 C -0.136 4.136 14 C -0.247 4.247 15 C -0.140 4.140 16 C -0.189 4.189 17 C 0.071 3.929 18 C -0.524 4.524 19 H 0.100 0.900 20 C -0.175 4.175 21 N -0.453 5.453 22 Si 0.798 3.202 23 H -0.175 1.175 24 H -0.198 1.198 25 H -0.190 1.190 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.239 0.761 35 H 0.256 0.744 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.636 -10.819 2.461 12.929 hybrid contribution -0.116 0.608 -0.672 0.913 sum -6.752 -10.211 1.789 12.371 Atomic orbital electron populations 1.21832 0.94874 1.02248 1.02055 1.21453 0.96425 0.93556 1.03126 1.21715 0.91936 0.99179 0.99706 0.90735 1.22211 1.03767 1.00172 0.96783 1.21983 0.95954 0.87630 0.89762 0.84807 1.86522 1.78067 1.54847 1.15569 1.22393 0.79011 0.90134 0.83059 1.90565 1.47255 1.72412 1.34903 1.43388 1.55683 1.13503 1.14790 1.18070 1.08107 0.87384 0.95190 1.21165 1.00986 0.94100 0.97355 1.20669 1.10142 0.96492 0.97380 1.20718 1.01023 0.99142 0.93088 1.20856 1.04488 0.96522 0.96992 1.17715 0.90085 0.93422 0.91673 1.19484 1.46632 0.94972 0.91318 0.89954 1.26657 0.91216 0.95558 1.04025 1.69867 1.33003 1.12348 1.30091 0.85311 0.79892 0.79057 0.75891 1.17481 1.19811 1.19041 0.91708 0.92894 0.92217 0.91025 0.91097 0.89754 0.93500 0.90888 0.76060 0.74437 0.86031 0.86861 0.87078 0.87874 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.68 71.98 0.70 -1.55 16 2 C -0.11 -1.83 5.33 30.59 0.16 -1.67 16 3 C -0.11 -2.27 2.15 -10.79 -0.02 -2.29 16 4 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 5 C -0.17 -3.85 7.60 71.98 0.55 -3.31 16 6 C 0.11 2.92 3.03 29.85 0.09 3.01 16 7 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 8 O -0.54 -14.60 12.31 -130.11 -1.60 -16.20 16 9 C 0.47 17.29 6.80 87.65 0.60 17.89 16 10 O -0.57 -25.16 13.25 15.82 0.21 -24.95 16 11 N -0.63 -25.25 3.86 -302.27 -1.17 -26.42 16 12 C 0.01 0.36 6.48 38.88 0.25 0.61 16 13 C -0.12 -5.69 8.77 22.36 0.20 -5.50 16 14 C -0.23 -10.67 10.04 22.42 0.22 -10.45 16 15 C -0.12 -5.79 9.97 22.01 0.22 -5.57 16 16 C -0.17 -8.84 8.60 22.47 0.19 -8.64 16 17 C 0.07 3.91 5.53 -21.18 -0.12 3.80 16 18 C -0.49 -24.51 8.28 23.38 0.19 -24.32 16 19 H 0.08 3.80 7.32 -2.91 -0.02 3.78 16 20 C 0.04 1.92 5.18 85.26 0.44 2.36 16 21 N -0.83 -41.35 11.12 21.83 0.24 -41.10 16 22 Si 0.98 35.60 29.58 68.60 2.03 37.63 16 23 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 24 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.87 6.44 -2.39 -0.02 0.85 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.22 7.57 -2.38 -0.02 1.21 16 31 H 0.08 1.60 6.31 -2.38 -0.02 1.59 16 32 H 0.05 1.33 5.74 -2.39 -0.01 1.32 16 33 H 0.07 1.48 7.92 -2.39 -0.02 1.46 16 34 H 0.39 8.94 8.74 -74.06 -0.65 8.29 16 35 H 0.42 15.01 5.12 -92.71 -0.47 14.53 16 36 H 0.12 5.93 5.57 -2.91 -0.02 5.91 16 37 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 38 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 39 H 0.10 5.57 6.45 -2.91 -0.02 5.55 16 40 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 Total: -1.00 -62.14 321.19 3.33 -58.80 By element: Atomic # 1 Polarization: 47.93 SS G_CDS: -0.05 Total: 47.88 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 3.67 Total: -35.64 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -0.93 Total: -67.53 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.39 Total: -41.15 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Total: -62.14 3.33 -58.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580843881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.262 kcal (2) G-P(sol) polarization free energy of solvation -62.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds