Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46735 * 2 1 4 4 H 1.08998 * 109.47202 * 55.00150 * 3 2 1 5 5 C 1.52995 * 109.47096 * 294.99939 * 3 2 1 6 6 C 1.52994 * 109.47056 * 175.00028 * 3 2 1 7 7 H 1.09003 * 109.47274 * 304.99981 * 6 3 2 8 8 O 1.42904 * 109.47172 * 64.99827 * 6 3 2 9 9 C 1.50693 * 109.47534 * 185.00104 * 6 3 2 10 10 O 1.21281 * 120.00369 * 245.00165 * 9 6 3 11 11 N 1.34786 * 120.00039 * 64.99477 * 9 6 3 12 12 C 1.39120 * 119.99860 * 184.37270 * 11 9 6 13 13 C 1.38650 * 120.29084 * 325.35817 * 12 11 9 14 14 C 1.38222 * 120.03301 * 180.25990 * 13 12 11 15 15 C 1.38862 * 120.61902 * 359.74081 * 14 13 12 16 16 C 1.36470 * 120.57690 * 359.97438 * 15 14 13 17 17 C 1.40732 * 119.93958 * 0.02562 * 16 15 14 18 18 C 1.41075 * 120.29708 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00041 * 154.82799 * 18 17 16 20 20 C 1.39960 * 119.99933 * 334.81956 * 18 17 16 21 21 N 1.30848 * 119.99928 * 334.81700 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 154.81564 * 20 18 17 23 23 H 1.48507 * 109.46814 * 180.02562 * 22 20 18 24 24 H 1.48494 * 109.47168 * 299.99825 * 22 20 18 25 25 H 1.48502 * 109.47305 * 60.00583 * 22 20 18 26 26 H 1.08997 * 109.47329 * 299.99765 * 1 2 3 27 27 H 1.09002 * 109.47102 * 60.00507 * 1 2 3 28 28 H 1.09005 * 109.46882 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47329 * 240.00235 * 2 1 3 30 30 H 1.08990 * 109.47166 * 119.99933 * 2 1 3 31 31 H 1.08998 * 109.47268 * 300.00171 * 5 3 2 32 32 H 1.09003 * 109.47460 * 60.00321 * 5 3 2 33 33 H 1.09005 * 109.46928 * 180.02562 * 5 3 2 34 34 H 0.96698 * 113.99986 * 60.00255 * 8 6 3 35 35 H 0.96996 * 119.99503 * 4.37567 * 11 9 6 36 36 H 1.07999 * 119.97596 * 359.97438 * 13 12 11 37 37 H 1.08002 * 119.68759 * 179.75998 * 14 13 12 38 38 H 1.07995 * 119.71184 * 180.02562 * 15 14 13 39 39 H 1.07992 * 120.02516 * 180.02562 * 16 15 14 40 40 H 0.97003 * 120.00231 * 354.62522 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5647 1.4445 0.1257 7 1 3.8570 0.8802 1.0113 8 8 4.1392 0.8405 -1.0350 9 6 4.0569 2.8634 0.2493 10 8 4.7509 3.3427 -0.6223 11 7 3.7257 3.6001 1.3283 12 6 4.1031 4.9372 1.4002 13 6 5.3089 5.3537 0.8572 14 6 5.6810 6.6826 0.9363 15 6 4.8544 7.6130 1.5522 16 6 3.6595 7.2316 2.0899 17 6 3.2570 5.8848 2.0227 18 6 2.0235 5.4822 2.5766 19 1 1.5240 4.6019 2.1997 20 6 1.4472 6.2234 3.6145 21 7 2.2030 6.9504 4.3971 22 14 -0.4008 6.1749 3.8824 23 1 -0.7566 7.0397 5.0361 24 1 -1.0908 6.6679 2.6635 25 1 -0.8242 4.7789 4.1606 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0698 1.5876 -2.1491 32 1 0.5489 2.1253 -1.3969 33 1 1.9989 3.1542 -1.3075 34 1 3.9205 1.2913 -1.8621 35 1 3.2243 3.1979 2.0547 36 1 5.9598 4.6386 0.3763 37 1 6.6233 7.0002 0.5149 38 1 5.1595 8.6476 1.6054 39 1 3.0234 7.9628 2.5664 40 1 3.1683 6.9154 4.3084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580843884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -92.950918 kcal Electronic energy + Delta-G solvation = -22062.164962 eV Core-core repulsion = 18840.515966 eV Total energy + Delta-G solvation = -3221.648996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15461 -38.13334 -36.79504 -34.79422 -33.95970 -33.75059 -30.22437 -29.38333 -28.74055 -27.01680 -25.13090 -24.07936 -21.67995 -20.96429 -20.21028 -19.47934 -18.13018 -17.43973 -16.46044 -16.21479 -15.49071 -15.00065 -14.70618 -14.29610 -14.11297 -13.94898 -13.71776 -13.20541 -12.86325 -12.51717 -12.29914 -12.12764 -12.04933 -11.93594 -11.58085 -11.54903 -11.40579 -11.07944 -10.86481 -10.72011 -10.69839 -10.48655 -10.42723 -10.16681 -9.73033 -9.32147 -9.04081 -8.78388 -7.65805 -7.42936 -7.00682 -4.52232 2.50270 2.75978 3.07852 3.17810 3.23920 3.28295 3.78147 3.92615 4.35258 4.50480 4.69743 4.78385 4.86844 5.21423 5.24449 5.41632 5.42672 5.46292 5.61624 5.68811 5.90175 5.91200 5.98901 6.03321 6.17548 6.29498 6.30048 6.33671 6.45387 6.78702 6.91582 7.10701 7.34358 7.44997 7.57837 7.68223 7.72830 7.88197 7.98215 8.18336 8.29551 8.62585 8.72995 8.90280 9.95784 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.007036 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.136388 B = 3978.697829 C = 5698.991653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.119 4.119 4 H 0.087 0.913 5 C -0.156 4.156 6 C 0.098 3.902 7 H 0.118 0.882 8 O -0.540 6.540 9 C 0.470 3.530 10 O -0.536 6.536 11 N -0.631 5.631 12 C 0.004 3.996 13 C -0.072 4.072 14 C -0.241 4.241 15 C -0.091 4.091 16 C -0.209 4.209 17 C 0.092 3.908 18 C -0.525 4.525 19 H 0.074 0.926 20 C 0.041 3.959 21 N -0.794 5.794 22 Si 1.062 2.938 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.276 1.276 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.380 0.620 35 H 0.402 0.598 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 -9.945 -4.126 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.139 4.139 4 H 0.106 0.894 5 C -0.213 4.213 6 C 0.035 3.965 7 H 0.136 0.864 8 O -0.345 6.345 9 C 0.257 3.743 10 O -0.414 6.414 11 N -0.275 5.275 12 C -0.090 4.090 13 C -0.093 4.093 14 C -0.261 4.261 15 C -0.110 4.110 16 C -0.228 4.228 17 C 0.088 3.912 18 C -0.553 4.553 19 H 0.092 0.908 20 C -0.182 4.182 21 N -0.417 5.417 22 Si 0.886 3.114 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.201 1.201 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.229 0.771 35 H 0.237 0.763 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.669 -9.396 -3.356 11.016 hybrid contribution 0.813 -0.264 -0.942 1.272 sum -3.856 -9.660 -4.298 11.254 Atomic orbital electron populations 1.21841 0.95781 1.01412 1.02167 1.21485 0.95737 0.95246 1.02507 1.21821 0.93990 0.97703 1.00339 0.89447 1.21893 1.02122 1.00909 0.96355 1.21873 0.92641 0.91122 0.90862 0.86397 1.86514 1.76216 1.55183 1.16604 1.21466 0.81719 0.88867 0.82276 1.90653 1.37660 1.72216 1.40860 1.42871 1.54736 1.10147 1.19719 1.17606 0.95342 0.82354 1.13665 1.20708 0.94328 0.95798 0.98426 1.20266 1.01226 0.93646 1.10928 1.20403 0.95179 0.97381 0.98050 1.20754 0.98191 0.95343 1.08552 1.17480 0.91342 0.90388 0.92033 1.20309 1.04368 1.12895 1.17722 0.90795 1.26954 1.07820 0.91408 0.91968 1.70465 1.10042 1.30401 1.30768 0.83673 0.72589 0.77616 0.77568 1.19808 1.20019 1.20117 0.92542 0.92493 0.92895 0.91370 0.91881 0.92477 0.91610 0.92001 0.77065 0.76297 0.87195 0.89020 0.89180 0.87363 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.11 -1.14 5.25 -26.72 -0.14 -1.28 16 3 C -0.12 -1.45 2.20 -90.62 -0.20 -1.65 16 4 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 5 C -0.16 -1.94 8.34 37.16 0.31 -1.63 16 6 C 0.10 1.38 3.14 -27.89 -0.09 1.29 16 7 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 8 O -0.54 -7.79 12.52 -55.09 -0.69 -8.48 16 9 C 0.47 8.76 5.99 -10.98 -0.07 8.70 16 10 O -0.54 -11.83 13.74 -14.30 -0.20 -12.03 16 11 N -0.63 -12.54 4.78 -9.48 -0.05 -12.58 16 12 C 0.00 0.09 6.34 -83.17 -0.53 -0.43 16 13 C -0.07 -1.74 8.69 -39.43 -0.34 -2.08 16 14 C -0.24 -5.58 10.04 -39.36 -0.39 -5.97 16 15 C -0.09 -2.12 9.97 -39.99 -0.40 -2.52 16 16 C -0.21 -5.21 7.88 -39.28 -0.31 -5.52 16 17 C 0.09 2.31 5.32 -106.65 -0.57 1.74 16 18 C -0.52 -12.76 8.35 -37.86 -0.32 -13.07 16 19 H 0.07 1.70 7.39 -52.49 -0.39 1.31 16 20 C 0.04 0.98 4.95 -17.33 -0.09 0.89 16 21 N -0.79 -20.01 12.32 55.55 0.68 -19.33 16 22 Si 1.06 20.32 30.00 -169.99 -5.10 15.22 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 25 H -0.28 -4.91 7.11 56.52 0.40 -4.51 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.63 6.72 -51.93 -0.35 0.28 16 32 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 33 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 34 H 0.38 4.95 6.94 45.56 0.32 5.26 16 35 H 0.40 7.16 7.81 -40.82 -0.32 6.84 16 36 H 0.11 2.64 6.20 -52.49 -0.33 2.32 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.11 2.77 6.45 -52.49 -0.34 2.43 16 40 H 0.30 7.81 6.62 -40.82 -0.27 7.54 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -28.56 323.94 -8.12 -36.69 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -4.89 Total: 18.27 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -2.77 Total: -22.65 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.64 Total: -31.91 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.89 Total: -20.50 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.10 Total: 15.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.56 -8.12 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580843884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.262 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds