Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46735 * 2 1 4 4 H 1.08998 * 109.47202 * 55.00150 * 3 2 1 5 5 C 1.52995 * 109.47096 * 294.99939 * 3 2 1 6 6 C 1.52994 * 109.47056 * 175.00028 * 3 2 1 7 7 H 1.09003 * 109.47274 * 304.99981 * 6 3 2 8 8 O 1.42904 * 109.47172 * 64.99827 * 6 3 2 9 9 C 1.50693 * 109.47534 * 185.00104 * 6 3 2 10 10 O 1.21281 * 120.00369 * 245.00165 * 9 6 3 11 11 N 1.34786 * 120.00039 * 64.99477 * 9 6 3 12 12 C 1.39120 * 119.99860 * 184.37270 * 11 9 6 13 13 C 1.38650 * 120.29084 * 325.35817 * 12 11 9 14 14 C 1.38222 * 120.03301 * 180.25990 * 13 12 11 15 15 C 1.38862 * 120.61902 * 359.74081 * 14 13 12 16 16 C 1.36470 * 120.57690 * 359.97438 * 15 14 13 17 17 C 1.40732 * 119.93958 * 0.02562 * 16 15 14 18 18 C 1.41075 * 120.29708 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00041 * 154.82799 * 18 17 16 20 20 C 1.39960 * 119.99933 * 334.81956 * 18 17 16 21 21 N 1.30848 * 119.99928 * 334.81700 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 154.81564 * 20 18 17 23 23 H 1.48507 * 109.46814 * 180.02562 * 22 20 18 24 24 H 1.48494 * 109.47168 * 299.99825 * 22 20 18 25 25 H 1.48502 * 109.47305 * 60.00583 * 22 20 18 26 26 H 1.08997 * 109.47329 * 299.99765 * 1 2 3 27 27 H 1.09002 * 109.47102 * 60.00507 * 1 2 3 28 28 H 1.09005 * 109.46882 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47329 * 240.00235 * 2 1 3 30 30 H 1.08990 * 109.47166 * 119.99933 * 2 1 3 31 31 H 1.08998 * 109.47268 * 300.00171 * 5 3 2 32 32 H 1.09003 * 109.47460 * 60.00321 * 5 3 2 33 33 H 1.09005 * 109.46928 * 180.02562 * 5 3 2 34 34 H 0.96698 * 113.99986 * 60.00255 * 8 6 3 35 35 H 0.96996 * 119.99503 * 4.37567 * 11 9 6 36 36 H 1.07999 * 119.97596 * 359.97438 * 13 12 11 37 37 H 1.08002 * 119.68759 * 179.75998 * 14 13 12 38 38 H 1.07995 * 119.71184 * 180.02562 * 15 14 13 39 39 H 1.07992 * 120.02516 * 180.02562 * 16 15 14 40 40 H 0.97003 * 120.00231 * 354.62522 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5647 1.4445 0.1257 7 1 3.8570 0.8802 1.0113 8 8 4.1392 0.8405 -1.0350 9 6 4.0569 2.8634 0.2493 10 8 4.7509 3.3427 -0.6223 11 7 3.7257 3.6001 1.3283 12 6 4.1031 4.9372 1.4002 13 6 5.3089 5.3537 0.8572 14 6 5.6810 6.6826 0.9363 15 6 4.8544 7.6130 1.5522 16 6 3.6595 7.2316 2.0899 17 6 3.2570 5.8848 2.0227 18 6 2.0235 5.4822 2.5766 19 1 1.5240 4.6019 2.1997 20 6 1.4472 6.2234 3.6145 21 7 2.2030 6.9504 4.3971 22 14 -0.4008 6.1749 3.8824 23 1 -0.7566 7.0397 5.0361 24 1 -1.0908 6.6679 2.6635 25 1 -0.8242 4.7789 4.1606 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0698 1.5876 -2.1491 32 1 0.5489 2.1253 -1.3969 33 1 1.9989 3.1542 -1.3075 34 1 3.9205 1.2913 -1.8621 35 1 3.2243 3.1979 2.0547 36 1 5.9598 4.6386 0.3763 37 1 6.6233 7.0002 0.5149 38 1 5.1595 8.6476 1.6054 39 1 3.0234 7.9628 2.5664 40 1 3.1683 6.9154 4.3084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580843884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -109.503621 kcal Electronic energy + Delta-G solvation = -22062.882741 eV Core-core repulsion = 18840.515966 eV Total energy + Delta-G solvation = -3222.366775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64357 -39.71015 -38.23616 -36.00207 -35.75749 -35.27485 -31.43230 -31.20768 -30.19931 -28.29224 -26.92851 -25.15033 -23.35773 -22.71095 -21.40835 -20.85248 -19.89931 -18.92900 -17.99244 -17.48604 -16.88384 -16.47981 -16.24949 -15.79064 -15.54880 -15.34622 -14.83272 -14.59691 -14.50551 -14.18777 -13.89618 -13.53117 -13.32220 -13.02248 -12.95740 -12.70100 -12.58715 -12.47553 -12.46023 -12.19312 -11.96766 -11.70422 -11.59471 -11.48716 -11.36592 -11.05048 -10.80006 -10.34291 -9.56552 -9.30569 -8.83673 -6.41933 0.73138 0.90179 1.53300 1.63924 1.66719 1.80553 2.29473 2.33778 2.69243 3.22395 3.52653 3.65567 3.72104 3.84054 4.05836 4.37239 4.38380 4.38758 4.49257 4.60704 4.66739 4.69800 4.72966 4.93180 4.99424 5.06088 5.08152 5.12464 5.23048 5.28195 5.41413 5.48061 5.52974 5.65643 5.77425 5.90370 6.00904 6.11374 6.33412 6.42473 6.62976 6.84247 6.90848 7.28967 8.05218 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.007036 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.136388 B = 3978.697829 C = 5698.991653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.113 4.113 4 H 0.082 0.918 5 C -0.154 4.154 6 C 0.110 3.890 7 H 0.141 0.859 8 O -0.543 6.543 9 C 0.470 3.530 10 O -0.572 6.572 11 N -0.630 5.630 12 C 0.001 3.999 13 C -0.090 4.090 14 C -0.243 4.243 15 C -0.096 4.096 16 C -0.228 4.228 17 C 0.066 3.934 18 C -0.539 4.539 19 H 0.083 0.917 20 C 0.008 3.992 21 N -0.814 5.814 22 Si 1.111 2.889 23 H -0.277 1.277 24 H -0.269 1.269 25 H -0.249 1.249 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.385 0.615 35 H 0.411 0.589 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 -11.681 -4.334 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.132 4.132 4 H 0.101 0.899 5 C -0.211 4.211 6 C 0.047 3.953 7 H 0.158 0.842 8 O -0.349 6.349 9 C 0.258 3.742 10 O -0.452 6.452 11 N -0.274 5.274 12 C -0.094 4.094 13 C -0.110 4.110 14 C -0.263 4.263 15 C -0.114 4.114 16 C -0.248 4.248 17 C 0.062 3.938 18 C -0.567 4.567 19 H 0.101 0.899 20 C -0.209 4.209 21 N -0.437 5.437 22 Si 0.928 3.072 23 H -0.202 1.202 24 H -0.194 1.194 25 H -0.173 1.173 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.236 0.764 35 H 0.248 0.752 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.941 -11.165 -3.570 13.141 hybrid contribution 1.305 0.268 -0.956 1.640 sum -4.636 -10.897 -4.526 12.677 Atomic orbital electron populations 1.21838 0.94984 1.02285 1.02035 1.21447 0.96337 0.93374 1.03167 1.21799 0.92238 0.99298 0.99896 0.89937 1.21886 1.03038 0.98922 0.97260 1.21957 0.93823 0.87853 0.91676 0.84160 1.86509 1.76498 1.54953 1.16938 1.22395 0.80423 0.90356 0.80985 1.90627 1.39237 1.73456 1.41915 1.42890 1.54945 1.08927 1.20671 1.17784 0.94999 0.84016 1.12567 1.20862 0.94672 0.96357 0.99111 1.20582 1.02017 0.93367 1.10291 1.20651 0.94577 0.98773 0.97449 1.20794 0.99038 0.95374 1.09570 1.17803 0.92210 0.90881 0.92935 1.20514 1.04452 1.13691 1.18042 0.89876 1.28308 1.11278 0.90190 0.91162 1.70575 1.09239 1.31856 1.32058 0.83075 0.67673 0.79003 0.77425 1.20151 1.19435 1.17300 0.92847 0.92481 0.91560 0.91058 0.90896 0.91044 0.90261 0.95527 0.76432 0.75201 0.87497 0.86706 0.86701 0.88662 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.72 16 2 C -0.11 -1.83 5.25 30.60 0.16 -1.67 16 3 C -0.11 -2.52 2.20 -10.79 -0.02 -2.55 16 4 H 0.08 1.95 7.90 -2.39 -0.02 1.93 16 5 C -0.15 -3.62 8.34 71.98 0.60 -3.02 16 6 C 0.11 2.89 3.14 29.84 0.09 2.98 16 7 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 8 O -0.54 -14.62 12.52 -129.99 -1.63 -16.25 16 9 C 0.47 17.30 5.99 87.65 0.52 17.82 16 10 O -0.57 -25.38 13.74 15.96 0.22 -25.16 16 11 N -0.63 -24.96 4.78 -302.27 -1.45 -26.40 16 12 C 0.00 0.04 6.34 38.88 0.25 0.29 16 13 C -0.09 -4.35 8.69 22.36 0.19 -4.15 16 14 C -0.24 -11.21 10.04 22.42 0.22 -10.98 16 15 C -0.10 -4.47 9.97 22.01 0.22 -4.25 16 16 C -0.23 -11.64 7.88 22.47 0.18 -11.46 16 17 C 0.07 3.37 5.32 -21.18 -0.11 3.26 16 18 C -0.54 -26.30 8.35 23.38 0.20 -26.11 16 19 H 0.08 3.78 7.39 -2.91 -0.02 3.76 16 20 C 0.01 0.37 4.95 85.26 0.42 0.80 16 21 N -0.81 -41.70 12.32 21.83 0.27 -41.43 16 22 Si 1.11 39.92 30.00 68.60 2.06 41.98 16 23 H -0.28 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 25 H -0.25 -7.87 7.11 99.48 0.71 -7.16 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.89 6.57 -2.39 -0.02 0.87 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.07 1.22 7.96 -2.39 -0.02 1.20 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.45 6.72 -2.39 -0.02 1.43 16 32 H 0.08 1.63 6.57 -2.39 -0.02 1.62 16 33 H 0.03 0.80 7.38 -2.38 -0.02 0.78 16 34 H 0.39 9.48 6.94 -74.06 -0.51 8.96 16 35 H 0.41 14.45 7.81 -92.71 -0.72 13.72 16 36 H 0.11 5.20 6.20 -2.91 -0.02 5.18 16 37 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.10 5.03 6.45 -2.91 -0.02 5.01 16 40 H 0.29 15.32 6.62 -92.71 -0.61 14.70 16 Total: -1.00 -61.89 323.94 3.07 -58.81 By element: Atomic # 1 Polarization: 49.25 SS G_CDS: -0.02 Total: 49.23 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 3.62 Total: -40.78 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.18 Total: -67.84 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.41 Total: -41.40 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.06 Total: 41.98 kcal Total: -61.89 3.07 -58.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580843884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.690 kcal (2) G-P(sol) polarization free energy of solvation -61.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds