Wall clock time and date at job start Mon Mar 30 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46910 * 2 1 4 4 H 1.08995 * 109.47025 * 304.99217 * 3 2 1 5 5 C 1.53000 * 109.47371 * 64.99540 * 3 2 1 6 6 C 1.53006 * 109.46897 * 184.99643 * 3 2 1 7 7 H 1.09003 * 109.46783 * 59.99782 * 6 3 2 8 8 O 1.42897 * 109.46901 * 300.00126 * 6 3 2 9 9 C 1.50698 * 109.46883 * 179.97438 * 6 3 2 10 10 O 1.21288 * 119.99567 * 115.00071 * 9 6 3 11 11 N 1.34776 * 120.00171 * 295.00083 * 9 6 3 12 12 C 1.39131 * 119.99741 * 174.84986 * 11 9 6 13 13 C 1.38643 * 120.28435 * 339.39943 * 12 11 9 14 14 C 1.38219 * 120.03329 * 179.70523 * 13 12 11 15 15 C 1.38870 * 120.61509 * 0.03781 * 14 13 12 16 16 C 1.36469 * 120.57932 * 359.97438 * 15 14 13 17 17 C 1.40733 * 119.93802 * 359.97438 * 16 15 14 18 18 C 1.41072 * 120.30043 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00079 * 147.98062 * 18 17 16 20 20 C 1.39961 * 119.99674 * 327.98226 * 18 17 16 21 21 N 1.30842 * 120.00357 * 345.12812 * 20 18 17 22 22 Si 1.86802 * 119.99727 * 165.12714 * 20 18 17 23 23 H 1.48504 * 109.47047 * 89.99926 * 22 20 18 24 24 H 1.48494 * 109.47121 * 209.99911 * 22 20 18 25 25 H 1.48499 * 109.47541 * 330.00185 * 22 20 18 26 26 H 1.08997 * 109.47400 * 300.00103 * 1 2 3 27 27 H 1.09001 * 109.46767 * 60.00288 * 1 2 3 28 28 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47452 * 239.99390 * 2 1 3 30 30 H 1.09001 * 109.46767 * 119.99712 * 2 1 3 31 31 H 1.08996 * 109.46894 * 179.97438 * 5 3 2 32 32 H 1.08995 * 109.46901 * 300.00219 * 5 3 2 33 33 H 1.09003 * 109.46755 * 60.00142 * 5 3 2 34 34 H 0.96707 * 113.99861 * 299.99500 * 8 6 3 35 35 H 0.97002 * 120.00091 * 354.84966 * 11 9 6 36 36 H 1.07994 * 119.98503 * 359.71705 * 13 12 11 37 37 H 1.07997 * 119.69666 * 180.02562 * 14 13 12 38 38 H 1.07998 * 119.71536 * 179.97438 * 15 14 13 39 39 H 1.07993 * 120.03166 * 179.97438 * 16 15 14 40 40 H 0.96999 * 120.00819 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6351 2.1267 1.3073 6 6 3.5649 1.4444 -0.1256 7 1 3.8532 0.9570 -1.0570 8 8 4.1345 0.7377 0.9780 9 6 4.0671 2.8652 -0.1263 10 8 4.7643 3.2623 0.7833 11 7 3.7415 3.6946 -1.1375 12 6 4.1143 5.0340 -1.0860 13 6 4.4253 5.6271 0.1280 14 6 4.8010 6.9565 0.1724 15 6 4.8706 7.7110 -0.9914 16 6 4.5697 7.1527 -2.1998 17 6 4.1855 5.8008 -2.2727 18 6 3.8734 5.2158 -3.5179 19 1 4.0803 4.1698 -3.6901 20 6 3.2955 5.9908 -4.5299 21 7 2.7794 7.1590 -4.2455 22 14 3.2612 5.3574 -6.2870 23 1 2.0137 4.5832 -6.5098 24 1 3.3062 6.5053 -7.2279 25 1 4.4365 4.4801 -6.5200 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9988 3.1541 1.3074 32 1 0.5488 2.1253 1.3968 33 1 2.0698 1.5876 2.1491 34 1 3.9189 1.1166 1.8412 35 1 3.2472 3.3577 -1.9011 36 1 4.3741 5.0500 1.0394 37 1 5.0424 7.4128 1.1210 38 1 5.1654 8.7487 -0.9398 39 1 4.6265 7.7477 -3.0992 40 1 2.3792 7.6963 -4.9469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580843885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:38 Heat of formation + Delta-G solvation = -84.321568 kcal Electronic energy + Delta-G solvation = -21922.230946 eV Core-core repulsion = 18700.956147 eV Total energy + Delta-G solvation = -3221.274799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17420 -38.02093 -36.66756 -34.76707 -33.72860 -33.65411 -30.25788 -29.64763 -28.66940 -26.94471 -25.23559 -24.08667 -21.72820 -20.82130 -20.20833 -19.35480 -17.68523 -17.21230 -16.48421 -16.14933 -15.54299 -15.09942 -14.91854 -14.39164 -13.94203 -13.80589 -13.63202 -12.98182 -12.78146 -12.60605 -12.42276 -12.12723 -11.93990 -11.75595 -11.61125 -11.48656 -11.32169 -11.20137 -11.00111 -10.80843 -10.73011 -10.55231 -10.36273 -10.04956 -9.75113 -9.37457 -9.25860 -8.59176 -7.40427 -6.98608 -6.70570 -4.43180 2.52763 2.81380 3.02137 3.05708 3.16233 3.40463 3.78813 3.86898 4.36914 4.59555 4.69567 4.77677 4.87236 5.21726 5.25820 5.41377 5.44001 5.58506 5.62717 5.68516 5.87990 5.90355 5.97447 6.01326 6.28873 6.30090 6.32314 6.48451 6.57002 6.84861 7.02916 7.09092 7.24562 7.55895 7.62112 7.65531 7.91451 8.05451 8.07983 8.39122 8.51285 8.76021 8.79448 8.96485 10.15133 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.006033 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.170517 B = 4640.208236 C = 5878.483365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.120 4.120 4 H 0.086 0.914 5 C -0.156 4.156 6 C 0.097 3.903 7 H 0.119 0.881 8 O -0.538 6.538 9 C 0.468 3.532 10 O -0.534 6.534 11 N -0.629 5.629 12 C 0.022 3.978 13 C -0.104 4.104 14 C -0.219 4.219 15 C -0.117 4.117 16 C -0.143 4.143 17 C 0.102 3.898 18 C -0.478 4.478 19 H 0.075 0.925 20 C 0.080 3.920 21 N -0.797 5.797 22 Si 0.904 3.096 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.262 1.262 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.379 0.621 35 H 0.405 0.595 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -9.608 3.678 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.139 4.139 4 H 0.105 0.895 5 C -0.213 4.213 6 C 0.034 3.966 7 H 0.137 0.863 8 O -0.344 6.344 9 C 0.255 3.745 10 O -0.413 6.413 11 N -0.272 5.272 12 C -0.072 4.072 13 C -0.124 4.124 14 C -0.239 4.239 15 C -0.136 4.136 16 C -0.163 4.163 17 C 0.099 3.901 18 C -0.508 4.508 19 H 0.093 0.907 20 C -0.137 4.137 21 N -0.422 5.422 22 Si 0.729 3.271 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.185 1.185 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.228 0.772 35 H 0.241 0.759 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.296 -9.553 3.754 11.127 hybrid contribution -0.565 0.190 -0.958 1.128 sum -4.861 -9.363 2.795 10.914 Atomic orbital electron populations 1.21841 0.95865 1.01412 1.02063 1.21469 0.95590 0.95258 1.02634 1.21832 0.94145 0.97739 1.00192 0.89522 1.21908 1.02022 1.00917 0.96425 1.21885 0.92448 0.90024 0.92213 0.86313 1.86530 1.76620 1.54338 1.16863 1.21401 0.81457 0.88253 0.83417 1.90598 1.37633 1.76283 1.36769 1.42987 1.53891 1.08525 1.21750 1.17885 1.11791 0.83470 0.94102 1.20977 1.00404 0.94572 0.96472 1.20359 1.12179 0.94609 0.96724 1.20473 1.01778 0.97746 0.93633 1.20757 1.03287 0.95804 0.96410 1.17336 0.90216 0.92071 0.90502 1.19228 1.37575 0.97322 0.96654 0.90712 1.25802 0.92828 0.94347 1.00755 1.69800 1.26763 1.10639 1.35023 0.86377 0.79591 0.79459 0.81695 1.19534 1.20098 1.18547 0.92522 0.92630 0.92903 0.91822 0.91324 0.91999 0.91696 0.92493 0.77185 0.75931 0.85886 0.89161 0.89368 0.86896 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 37.16 0.36 -1.02 16 2 C -0.11 -1.10 5.19 -26.73 -0.14 -1.24 16 3 C -0.12 -1.39 2.24 -90.62 -0.20 -1.60 16 4 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 5 C -0.16 -1.83 8.40 37.16 0.31 -1.52 16 6 C 0.10 1.35 3.19 -27.88 -0.09 1.26 16 7 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 8 O -0.54 -7.64 12.37 -55.08 -0.68 -8.32 16 9 C 0.47 8.62 5.74 -10.99 -0.06 8.55 16 10 O -0.53 -11.56 13.26 -14.30 -0.19 -11.75 16 11 N -0.63 -12.51 5.13 -9.47 -0.05 -12.56 16 12 C 0.02 0.52 6.52 -83.17 -0.54 -0.03 16 13 C -0.10 -2.50 8.76 -39.44 -0.35 -2.85 16 14 C -0.22 -5.10 10.04 -39.35 -0.39 -5.50 16 15 C -0.12 -2.78 9.97 -39.99 -0.40 -3.17 16 16 C -0.14 -3.64 8.59 -39.28 -0.34 -3.98 16 17 C 0.10 2.62 5.50 -106.65 -0.59 2.03 16 18 C -0.48 -11.75 8.23 -37.86 -0.31 -12.06 16 19 H 0.07 1.73 7.29 -52.49 -0.38 1.35 16 20 C 0.08 1.91 5.15 -17.33 -0.09 1.82 16 21 N -0.80 -19.80 11.31 55.55 0.63 -19.18 16 22 Si 0.90 17.75 29.59 -169.99 -5.03 12.73 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 26 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.68 7.84 -51.93 -0.41 0.28 16 31 H 0.06 0.89 7.22 -51.93 -0.37 0.52 16 32 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 33 H 0.06 0.60 6.78 -51.93 -0.35 0.25 16 34 H 0.38 4.75 7.08 45.56 0.32 5.07 16 35 H 0.40 7.27 7.47 -40.82 -0.30 6.97 16 36 H 0.12 2.92 5.48 -52.49 -0.29 2.63 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.11 2.94 6.63 -52.49 -0.35 2.59 16 40 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -28.80 324.13 -8.17 -36.97 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -4.91 Total: 16.52 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.83 Total: -19.29 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.58 Total: -31.73 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.87 Total: -20.08 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.80 -8.17 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580843885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.352 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds