Wall clock time and date at job start Mon Mar 30 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46910 * 2 1 4 4 H 1.08995 * 109.47025 * 304.99217 * 3 2 1 5 5 C 1.53000 * 109.47371 * 64.99540 * 3 2 1 6 6 C 1.53006 * 109.46897 * 184.99643 * 3 2 1 7 7 H 1.09003 * 109.46783 * 59.99782 * 6 3 2 8 8 O 1.42897 * 109.46901 * 300.00126 * 6 3 2 9 9 C 1.50698 * 109.46883 * 179.97438 * 6 3 2 10 10 O 1.21288 * 119.99567 * 115.00071 * 9 6 3 11 11 N 1.34776 * 120.00171 * 295.00083 * 9 6 3 12 12 C 1.39131 * 119.99741 * 174.84986 * 11 9 6 13 13 C 1.38643 * 120.28435 * 339.39943 * 12 11 9 14 14 C 1.38219 * 120.03329 * 179.70523 * 13 12 11 15 15 C 1.38870 * 120.61509 * 0.03781 * 14 13 12 16 16 C 1.36469 * 120.57932 * 359.97438 * 15 14 13 17 17 C 1.40733 * 119.93802 * 359.97438 * 16 15 14 18 18 C 1.41072 * 120.30043 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00079 * 147.98062 * 18 17 16 20 20 C 1.39961 * 119.99674 * 327.98226 * 18 17 16 21 21 N 1.30842 * 120.00357 * 345.12812 * 20 18 17 22 22 Si 1.86802 * 119.99727 * 165.12714 * 20 18 17 23 23 H 1.48504 * 109.47047 * 89.99926 * 22 20 18 24 24 H 1.48494 * 109.47121 * 209.99911 * 22 20 18 25 25 H 1.48499 * 109.47541 * 330.00185 * 22 20 18 26 26 H 1.08997 * 109.47400 * 300.00103 * 1 2 3 27 27 H 1.09001 * 109.46767 * 60.00288 * 1 2 3 28 28 H 1.09000 * 109.46827 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47452 * 239.99390 * 2 1 3 30 30 H 1.09001 * 109.46767 * 119.99712 * 2 1 3 31 31 H 1.08996 * 109.46894 * 179.97438 * 5 3 2 32 32 H 1.08995 * 109.46901 * 300.00219 * 5 3 2 33 33 H 1.09003 * 109.46755 * 60.00142 * 5 3 2 34 34 H 0.96707 * 113.99861 * 299.99500 * 8 6 3 35 35 H 0.97002 * 120.00091 * 354.84966 * 11 9 6 36 36 H 1.07994 * 119.98503 * 359.71705 * 13 12 11 37 37 H 1.07997 * 119.69666 * 180.02562 * 14 13 12 38 38 H 1.07998 * 119.71536 * 179.97438 * 15 14 13 39 39 H 1.07993 * 120.03166 * 179.97438 * 16 15 14 40 40 H 0.96999 * 120.00819 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6351 2.1267 1.3073 6 6 3.5649 1.4444 -0.1256 7 1 3.8532 0.9570 -1.0570 8 8 4.1345 0.7377 0.9780 9 6 4.0671 2.8652 -0.1263 10 8 4.7643 3.2623 0.7833 11 7 3.7415 3.6946 -1.1375 12 6 4.1143 5.0340 -1.0860 13 6 4.4253 5.6271 0.1280 14 6 4.8010 6.9565 0.1724 15 6 4.8706 7.7110 -0.9914 16 6 4.5697 7.1527 -2.1998 17 6 4.1855 5.8008 -2.2727 18 6 3.8734 5.2158 -3.5179 19 1 4.0803 4.1698 -3.6901 20 6 3.2955 5.9908 -4.5299 21 7 2.7794 7.1590 -4.2455 22 14 3.2612 5.3574 -6.2870 23 1 2.0137 4.5832 -6.5098 24 1 3.3062 6.5053 -7.2279 25 1 4.4365 4.4801 -6.5200 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9988 3.1541 1.3074 32 1 0.5488 2.1253 1.3968 33 1 2.0698 1.5876 2.1491 34 1 3.9189 1.1166 1.8412 35 1 3.2472 3.3577 -1.9011 36 1 4.3741 5.0500 1.0394 37 1 5.0424 7.4128 1.1210 38 1 5.1654 8.7487 -0.9398 39 1 4.6265 7.7477 -3.0992 40 1 2.3792 7.6963 -4.9469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580843885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:37 Heat of formation + Delta-G solvation = -101.246518 kcal Electronic energy + Delta-G solvation = -21922.964867 eV Core-core repulsion = 18700.956147 eV Total energy + Delta-G solvation = -3222.008720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64442 -39.54133 -38.13001 -35.91985 -35.49018 -35.22506 -31.59178 -31.29689 -30.13369 -28.21077 -27.00835 -25.13059 -23.43316 -22.50827 -21.38111 -20.73256 -19.32154 -18.83425 -18.00845 -17.49424 -16.94158 -16.60122 -16.15241 -15.93748 -15.46916 -14.91549 -14.79420 -14.58085 -14.48151 -14.20964 -13.60439 -13.54238 -13.26046 -12.97570 -12.94371 -12.84594 -12.68690 -12.53857 -12.40713 -12.17133 -12.02371 -11.68311 -11.57284 -11.52864 -11.32751 -11.09509 -11.01393 -10.16244 -9.31209 -8.79926 -8.50442 -6.31311 0.79966 1.03430 1.42342 1.50472 1.55983 1.78999 2.22291 2.32733 2.78268 3.26273 3.66067 3.71265 3.75657 3.87262 4.09723 4.38749 4.50786 4.52498 4.61301 4.62387 4.70933 4.74840 4.77110 5.01172 5.05539 5.10397 5.14129 5.20202 5.24713 5.26924 5.42701 5.44209 5.54292 5.77975 5.79767 6.08897 6.16362 6.23997 6.49249 6.64382 6.74971 6.94184 7.00559 7.33100 8.38275 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.006033 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.170517 B = 4640.208236 C = 5878.483365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.113 4.113 4 H 0.085 0.915 5 C -0.154 4.154 6 C 0.109 3.891 7 H 0.138 0.862 8 O -0.542 6.542 9 C 0.469 3.531 10 O -0.568 6.568 11 N -0.629 5.629 12 C 0.017 3.983 13 C -0.120 4.120 14 C -0.224 4.224 15 C -0.123 4.123 16 C -0.166 4.166 17 C 0.074 3.926 18 C -0.497 4.497 19 H 0.083 0.917 20 C 0.042 3.958 21 N -0.830 5.830 22 Si 0.977 3.023 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.260 1.260 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.386 0.614 35 H 0.413 0.587 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -11.387 3.138 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.132 4.132 4 H 0.103 0.897 5 C -0.211 4.211 6 C 0.046 3.954 7 H 0.155 0.845 8 O -0.348 6.348 9 C 0.257 3.743 10 O -0.448 6.448 11 N -0.272 5.272 12 C -0.078 4.078 13 C -0.140 4.140 14 C -0.243 4.243 15 C -0.142 4.142 16 C -0.186 4.186 17 C 0.070 3.930 18 C -0.527 4.527 19 H 0.101 0.899 20 C -0.173 4.173 21 N -0.456 5.456 22 Si 0.798 3.202 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.184 1.184 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.236 0.764 35 H 0.250 0.750 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.080 -11.353 3.227 12.850 hybrid contribution -0.313 0.749 -0.688 1.064 sum -5.394 -10.605 2.539 12.166 Atomic orbital electron populations 1.21834 0.94993 1.02226 1.02032 1.21430 0.96254 0.93528 1.03129 1.21805 0.92169 0.99246 0.99997 0.89674 1.21902 1.02982 0.99105 0.97136 1.21951 0.93816 0.86632 0.93011 0.84455 1.86523 1.76922 1.54075 1.17329 1.22319 0.80214 0.89717 0.82006 1.90568 1.39068 1.77382 1.37808 1.43001 1.54113 1.07369 1.22678 1.18056 1.10904 0.85198 0.93661 1.21168 1.01094 0.95125 0.96636 1.20670 1.11497 0.94507 0.97661 1.20708 1.01355 0.98950 0.93142 1.20793 1.04910 0.96271 0.96650 1.17680 0.91061 0.92574 0.91638 1.19480 1.38216 0.98003 0.97038 0.89865 1.26633 0.91837 0.94300 1.04578 1.69867 1.27280 1.11858 1.36563 0.85270 0.79865 0.78823 0.76199 1.18254 1.19873 1.18427 0.92416 0.92835 0.91702 0.91088 0.91091 0.95167 0.90283 0.91249 0.76402 0.74956 0.85845 0.86818 0.87076 0.88283 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.67 71.98 0.70 -1.62 16 2 C -0.11 -1.79 5.19 30.60 0.16 -1.63 16 3 C -0.11 -2.42 2.24 -10.79 -0.02 -2.44 16 4 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 5 C -0.15 -3.43 8.40 71.98 0.60 -2.83 16 6 C 0.11 2.84 3.19 29.85 0.10 2.94 16 7 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 8 O -0.54 -14.40 12.37 -130.00 -1.61 -16.01 16 9 C 0.47 17.08 5.74 87.66 0.50 17.58 16 10 O -0.57 -24.67 13.26 15.92 0.21 -24.46 16 11 N -0.63 -25.02 5.13 -302.27 -1.55 -26.57 16 12 C 0.02 0.82 6.52 38.88 0.25 1.07 16 13 C -0.12 -5.84 8.76 22.36 0.20 -5.64 16 14 C -0.22 -10.44 10.04 22.42 0.22 -10.22 16 15 C -0.12 -5.86 9.97 22.01 0.22 -5.64 16 16 C -0.17 -8.69 8.59 22.47 0.19 -8.50 16 17 C 0.07 3.87 5.50 -21.18 -0.12 3.75 16 18 C -0.50 -24.66 8.23 23.38 0.19 -24.47 16 19 H 0.08 3.84 7.29 -2.91 -0.02 3.81 16 20 C 0.04 1.96 5.15 85.26 0.44 2.40 16 21 N -0.83 -41.69 11.31 21.83 0.25 -41.44 16 22 Si 0.98 35.85 29.59 68.60 2.03 37.88 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 24 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 25 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 26 H 0.06 0.86 6.56 -2.39 -0.02 0.84 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.20 7.84 -2.39 -0.02 1.18 16 31 H 0.03 0.86 7.22 -2.39 -0.02 0.84 16 32 H 0.08 1.52 6.56 -2.39 -0.02 1.51 16 33 H 0.07 1.35 6.78 -2.39 -0.02 1.33 16 34 H 0.39 9.10 7.08 -74.05 -0.52 8.58 16 35 H 0.41 14.73 7.47 -92.71 -0.69 14.04 16 36 H 0.12 5.95 5.48 -2.91 -0.02 5.93 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 39 H 0.10 5.34 6.63 -2.91 -0.02 5.32 16 40 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 Total: -1.00 -62.07 324.13 2.81 -59.26 By element: Atomic # 1 Polarization: 46.75 SS G_CDS: -0.15 Total: 46.60 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 3.63 Total: -35.24 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -1.30 Total: -68.02 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.40 Total: -40.47 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -62.07 2.81 -59.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580843885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.990 kcal (2) G-P(sol) polarization free energy of solvation -62.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds