Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 H 1.08993 * 109.47555 * 305.00164 * 3 2 1 5 5 C 1.53004 * 109.46997 * 64.99996 * 3 2 1 6 6 C 1.53001 * 109.46983 * 184.99427 * 3 2 1 7 7 H 1.08998 * 109.47161 * 294.51465 * 6 3 2 8 8 O 1.42903 * 109.46480 * 54.50813 * 6 3 2 9 9 C 1.50697 * 109.47110 * 174.50517 * 6 3 2 10 10 O 1.21285 * 120.00013 * 254.36926 * 9 6 3 11 11 N 1.34772 * 119.99741 * 74.37306 * 9 6 3 12 12 C 1.39129 * 120.00019 * 175.22796 * 11 9 6 13 13 C 1.38644 * 120.28311 * 32.76073 * 12 11 9 14 14 C 1.38216 * 120.03743 * 179.97438 * 13 12 11 15 15 C 1.38877 * 120.61421 * 0.03937 * 14 13 12 16 16 C 1.36460 * 120.57323 * 359.97438 * 15 14 13 17 17 C 1.40739 * 119.94443 * 359.66180 * 16 15 14 18 18 C 1.41074 * 120.30035 * 180.33973 * 17 16 15 19 19 H 1.07998 * 119.99567 * 146.19278 * 18 17 16 20 20 C 1.39962 * 120.00137 * 326.19422 * 18 17 16 21 21 N 1.30847 * 119.99685 * 170.16533 * 20 18 17 22 22 Si 1.86797 * 119.99842 * 350.16572 * 20 18 17 23 23 H 1.48507 * 109.46968 * 88.66050 * 22 20 18 24 24 H 1.48501 * 109.46913 * 208.65294 * 22 20 18 25 25 H 1.48494 * 109.47175 * 328.65904 * 22 20 18 26 26 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46661 * 60.00347 * 1 2 3 28 28 H 1.08990 * 109.47347 * 300.00050 * 1 2 3 29 29 H 1.08999 * 109.46868 * 120.00302 * 2 1 3 30 30 H 1.08996 * 109.46957 * 240.00190 * 2 1 3 31 31 H 1.09003 * 109.47042 * 67.63517 * 5 3 2 32 32 H 1.09000 * 109.47093 * 187.63369 * 5 3 2 33 33 H 1.09003 * 109.47058 * 307.64160 * 5 3 2 34 34 H 0.96698 * 114.00129 * 60.00326 * 8 6 3 35 35 H 0.97003 * 120.00343 * 355.22775 * 11 9 6 36 36 H 1.08001 * 119.98325 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.70018 * 180.02562 * 14 13 12 38 38 H 1.07992 * 119.71269 * 179.97438 * 15 14 13 39 39 H 1.08006 * 120.02748 * 180.02562 * 16 15 14 40 40 H 0.97000 * 119.99763 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1256 7 1 4.0032 0.9915 0.7637 8 8 3.9485 0.6949 -1.2802 9 6 4.0559 2.8626 -0.2613 10 8 4.4374 3.2719 -1.3374 11 7 4.0714 3.6761 0.8131 12 6 4.6163 4.9522 0.7118 13 6 4.5247 5.6591 -0.4774 14 6 5.0674 6.9267 -0.5723 15 6 5.7085 7.5048 0.5156 16 6 5.8133 6.8314 1.6978 17 6 5.2625 5.5423 1.8232 18 6 5.3602 4.8422 3.0440 19 1 4.5628 4.1831 3.3538 20 6 6.4906 5.0019 3.8538 21 7 6.5014 4.5104 5.0664 22 14 7.9837 5.9166 3.2034 23 1 7.8418 7.3660 3.4944 24 1 9.2086 5.3970 3.8629 25 1 8.0877 5.7143 1.7360 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.1763 1.6727 2.1376 32 1 1.8777 3.1878 1.2525 33 1 0.5631 2.0063 1.4635 34 1 3.5934 1.0417 -2.1101 35 1 3.7025 3.3719 1.6572 36 1 4.0289 5.2191 -1.3300 37 1 4.9925 7.4727 -1.5011 38 1 6.1277 8.4959 0.4252 39 1 6.3134 7.2895 2.5384 40 1 7.2846 4.6213 5.6277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580843887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = -80.749908 kcal Electronic energy + Delta-G solvation = -21991.225634 eV Core-core repulsion = 18770.105714 eV Total energy + Delta-G solvation = -3221.119920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22529 -38.12952 -36.78094 -35.09473 -33.86325 -33.61096 -30.58374 -30.44781 -28.61804 -26.70926 -25.18551 -24.10819 -22.11077 -20.82887 -20.33703 -19.73068 -17.75804 -17.47951 -16.72894 -16.27422 -15.50626 -15.17365 -14.54019 -14.27813 -14.18479 -13.96677 -13.69177 -13.40669 -13.09644 -12.73760 -12.60444 -12.21645 -12.11271 -11.85447 -11.74668 -11.72587 -11.44178 -11.14224 -10.90488 -10.78907 -10.68091 -10.48857 -10.33405 -10.02174 -9.88489 -9.40925 -9.28682 -8.77725 -7.67471 -7.17311 -6.97025 -4.54389 2.33794 2.60968 3.05354 3.10790 3.23904 3.30425 3.70854 3.95247 4.34778 4.50530 4.66721 4.73399 4.91642 5.16395 5.21364 5.31659 5.37400 5.45926 5.52632 5.65023 5.85014 5.88977 5.95838 6.02203 6.03422 6.11526 6.24757 6.29778 6.31775 6.58927 6.68604 6.92649 7.13700 7.30395 7.44437 7.56244 7.65403 7.76318 7.92108 8.17432 8.22542 8.52257 8.68321 8.80815 10.05114 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.005595 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.981532 B = 5003.098180 C = 5683.382179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.117 4.117 4 H 0.077 0.923 5 C -0.166 4.166 6 C 0.097 3.903 7 H 0.121 0.879 8 O -0.538 6.538 9 C 0.475 3.525 10 O -0.537 6.537 11 N -0.633 5.633 12 C 0.031 3.969 13 C -0.080 4.080 14 C -0.224 4.224 15 C -0.088 4.088 16 C -0.225 4.225 17 C 0.085 3.915 18 C -0.454 4.454 19 H 0.088 0.912 20 C 0.085 3.915 21 N -0.816 5.816 22 Si 0.913 3.087 23 H -0.269 1.269 24 H -0.293 1.293 25 H -0.246 1.246 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.380 0.620 35 H 0.407 0.593 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 -5.646 -5.442 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.136 4.136 4 H 0.095 0.905 5 C -0.223 4.223 6 C 0.035 3.965 7 H 0.139 0.861 8 O -0.343 6.343 9 C 0.261 3.739 10 O -0.415 6.415 11 N -0.278 5.278 12 C -0.063 4.063 13 C -0.100 4.100 14 C -0.244 4.244 15 C -0.107 4.107 16 C -0.245 4.245 17 C 0.080 3.920 18 C -0.483 4.483 19 H 0.106 0.894 20 C -0.132 4.132 21 N -0.441 5.441 22 Si 0.741 3.259 23 H -0.196 1.196 24 H -0.221 1.221 25 H -0.169 1.169 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.229 0.771 35 H 0.244 0.756 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.591 -5.868 -5.484 11.051 hybrid contribution 0.346 0.692 0.056 0.776 sum -7.245 -5.176 -5.428 10.428 Atomic orbital electron populations 1.21843 0.95902 1.01461 1.01913 1.21478 0.95529 0.95237 1.02907 1.21779 0.94047 0.97840 0.99918 0.90492 1.22101 1.02484 1.01338 0.96422 1.21945 0.94399 0.89208 0.90995 0.86106 1.86559 1.77149 1.53720 1.16823 1.21450 0.79356 0.88158 0.84890 1.90636 1.48044 1.75807 1.27060 1.43159 1.57671 1.13607 1.13374 1.17687 1.08202 0.85153 0.95281 1.20848 0.99098 0.93475 0.96614 1.20367 1.08768 0.96966 0.98267 1.20402 0.98569 0.98156 0.93567 1.20735 1.10062 0.95663 0.98045 1.17566 0.90591 0.91681 0.92124 1.19152 1.04654 1.23973 1.00507 0.89436 1.26027 1.00396 0.93359 0.93461 1.69626 1.30714 1.36973 1.06815 0.86314 0.78974 0.79159 0.81469 1.19553 1.22065 1.16907 0.92835 0.92895 0.92386 0.91672 0.91062 0.91702 0.91472 0.91370 0.77102 0.75560 0.86440 0.88495 0.88728 0.87617 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.68 37.16 0.36 -0.94 16 2 C -0.11 -1.11 5.28 -26.73 -0.14 -1.25 16 3 C -0.12 -1.32 2.12 -90.62 -0.19 -1.51 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 5 C -0.17 -1.86 7.87 37.16 0.29 -1.57 16 6 C 0.10 1.37 3.00 -27.88 -0.08 1.29 16 7 H 0.12 1.64 8.13 -51.93 -0.42 1.22 16 8 O -0.54 -7.66 12.08 -54.72 -0.66 -8.32 16 9 C 0.47 8.74 6.74 -10.99 -0.07 8.67 16 10 O -0.54 -11.52 13.59 -13.93 -0.19 -11.71 16 11 N -0.63 -12.38 4.11 -9.48 -0.04 -12.42 16 12 C 0.03 0.70 6.37 -83.17 -0.53 0.17 16 13 C -0.08 -1.81 8.71 -39.44 -0.34 -2.15 16 14 C -0.22 -4.82 10.04 -39.35 -0.39 -5.21 16 15 C -0.09 -1.92 9.97 -39.99 -0.40 -2.32 16 16 C -0.23 -5.35 6.99 -39.28 -0.27 -5.63 16 17 C 0.08 2.08 5.11 -106.65 -0.54 1.53 16 18 C -0.45 -11.52 9.09 -37.86 -0.34 -11.87 16 19 H 0.09 2.22 7.14 -52.49 -0.37 1.85 16 20 C 0.09 2.17 5.48 -17.33 -0.09 2.08 16 21 N -0.82 -21.04 13.93 55.55 0.77 -20.27 16 22 Si 0.91 20.85 24.43 -169.99 -4.15 16.70 16 23 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.25 -5.90 6.81 56.52 0.39 -5.52 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.48 6.41 -51.93 -0.33 0.15 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.71 7.38 -51.93 -0.38 0.32 16 31 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 32 H 0.07 0.86 6.11 -51.93 -0.32 0.55 16 33 H 0.07 0.66 6.24 -51.93 -0.32 0.34 16 34 H 0.38 4.57 8.69 45.56 0.40 4.96 16 35 H 0.41 7.23 5.56 -40.82 -0.23 7.00 16 36 H 0.12 2.60 6.04 -52.49 -0.32 2.29 16 37 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.48 4.48 -52.48 -0.24 2.25 16 40 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -29.12 316.35 -6.95 -36.06 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -4.68 Total: 13.90 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.76 Total: -18.71 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.73 Total: -32.69 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.85 Total: -20.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.15 Total: 16.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.12 -6.95 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580843887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.689 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds