Wall clock time and date at job start Mon Mar 30 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 H 1.08993 * 109.47555 * 305.00164 * 3 2 1 5 5 C 1.53004 * 109.46997 * 64.99996 * 3 2 1 6 6 C 1.53001 * 109.46983 * 184.99427 * 3 2 1 7 7 H 1.08998 * 109.47161 * 294.51465 * 6 3 2 8 8 O 1.42903 * 109.46480 * 54.50813 * 6 3 2 9 9 C 1.50697 * 109.47110 * 174.50517 * 6 3 2 10 10 O 1.21285 * 120.00013 * 254.36926 * 9 6 3 11 11 N 1.34772 * 119.99741 * 74.37306 * 9 6 3 12 12 C 1.39129 * 120.00019 * 175.22796 * 11 9 6 13 13 C 1.38644 * 120.28311 * 32.76073 * 12 11 9 14 14 C 1.38216 * 120.03743 * 179.97438 * 13 12 11 15 15 C 1.38877 * 120.61421 * 0.03937 * 14 13 12 16 16 C 1.36460 * 120.57323 * 359.97438 * 15 14 13 17 17 C 1.40739 * 119.94443 * 359.66180 * 16 15 14 18 18 C 1.41074 * 120.30035 * 180.33973 * 17 16 15 19 19 H 1.07998 * 119.99567 * 146.19278 * 18 17 16 20 20 C 1.39962 * 120.00137 * 326.19422 * 18 17 16 21 21 N 1.30847 * 119.99685 * 170.16533 * 20 18 17 22 22 Si 1.86797 * 119.99842 * 350.16572 * 20 18 17 23 23 H 1.48507 * 109.46968 * 88.66050 * 22 20 18 24 24 H 1.48501 * 109.46913 * 208.65294 * 22 20 18 25 25 H 1.48494 * 109.47175 * 328.65904 * 22 20 18 26 26 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46661 * 60.00347 * 1 2 3 28 28 H 1.08990 * 109.47347 * 300.00050 * 1 2 3 29 29 H 1.08999 * 109.46868 * 120.00302 * 2 1 3 30 30 H 1.08996 * 109.46957 * 240.00190 * 2 1 3 31 31 H 1.09003 * 109.47042 * 67.63517 * 5 3 2 32 32 H 1.09000 * 109.47093 * 187.63369 * 5 3 2 33 33 H 1.09003 * 109.47058 * 307.64160 * 5 3 2 34 34 H 0.96698 * 114.00129 * 60.00326 * 8 6 3 35 35 H 0.97003 * 120.00343 * 355.22775 * 11 9 6 36 36 H 1.08001 * 119.98325 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.70018 * 180.02562 * 14 13 12 38 38 H 1.07992 * 119.71269 * 179.97438 * 15 14 13 39 39 H 1.08006 * 120.02748 * 180.02562 * 16 15 14 40 40 H 0.97000 * 119.99763 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1256 7 1 4.0032 0.9915 0.7637 8 8 3.9485 0.6949 -1.2802 9 6 4.0559 2.8626 -0.2613 10 8 4.4374 3.2719 -1.3374 11 7 4.0714 3.6761 0.8131 12 6 4.6163 4.9522 0.7118 13 6 4.5247 5.6591 -0.4774 14 6 5.0674 6.9267 -0.5723 15 6 5.7085 7.5048 0.5156 16 6 5.8133 6.8314 1.6978 17 6 5.2625 5.5423 1.8232 18 6 5.3602 4.8422 3.0440 19 1 4.5628 4.1831 3.3538 20 6 6.4906 5.0019 3.8538 21 7 6.5014 4.5104 5.0664 22 14 7.9837 5.9166 3.2034 23 1 7.8418 7.3660 3.4944 24 1 9.2086 5.3970 3.8629 25 1 8.0877 5.7143 1.7360 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.1763 1.6727 2.1376 32 1 1.8777 3.1878 1.2525 33 1 0.5631 2.0063 1.4635 34 1 3.5934 1.0417 -2.1101 35 1 3.7025 3.3719 1.6572 36 1 4.0289 5.2191 -1.3300 37 1 4.9925 7.4727 -1.5011 38 1 6.1277 8.4959 0.4252 39 1 6.3134 7.2895 2.5384 40 1 7.2846 4.6213 5.6277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580843887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:40 Heat of formation + Delta-G solvation = -98.890508 kcal Electronic energy + Delta-G solvation = -21992.012270 eV Core-core repulsion = 18770.105714 eV Total energy + Delta-G solvation = -3221.906556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69909 -39.67101 -38.13899 -36.26021 -35.51809 -35.27850 -32.31924 -31.64180 -30.08733 -27.89119 -26.91680 -25.14777 -23.78741 -22.43193 -21.34120 -21.25601 -19.38535 -19.15388 -18.30040 -17.58062 -16.83048 -16.68951 -15.90696 -15.77353 -15.64630 -15.30748 -15.09047 -14.80732 -14.54363 -14.30888 -13.96448 -13.68009 -13.48314 -13.22379 -12.88300 -12.82670 -12.71391 -12.58395 -12.43690 -12.23980 -11.87377 -11.72080 -11.67378 -11.48086 -11.41501 -11.21020 -10.92428 -10.32293 -9.50010 -8.92140 -8.85160 -6.45767 0.61350 0.78890 1.25402 1.35130 1.46701 1.63630 2.10792 2.26656 2.65041 3.24274 3.42762 3.59793 3.75476 3.87187 4.12202 4.29851 4.32960 4.40182 4.51396 4.61298 4.63050 4.70009 4.75816 4.81017 4.92438 5.01605 5.11452 5.14083 5.19337 5.26367 5.31749 5.42223 5.54814 5.58026 5.67853 5.90470 5.96814 6.08353 6.35920 6.44864 6.59994 6.78835 6.81263 7.23023 8.20568 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.005595 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.981532 B = 5003.098180 C = 5683.382179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.105 4.105 4 H 0.076 0.924 5 C -0.166 4.166 6 C 0.107 3.893 7 H 0.128 0.872 8 O -0.544 6.544 9 C 0.473 3.527 10 O -0.568 6.568 11 N -0.634 5.634 12 C 0.027 3.973 13 C -0.097 4.097 14 C -0.213 4.213 15 C -0.094 4.094 16 C -0.238 4.238 17 C 0.061 3.939 18 C -0.473 4.473 19 H 0.073 0.927 20 C 0.053 3.947 21 N -0.850 5.850 22 Si 0.956 3.044 23 H -0.255 1.255 24 H -0.284 1.284 25 H -0.265 1.265 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.390 0.610 35 H 0.413 0.587 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 -5.519 -6.517 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.095 0.905 5 C -0.223 4.223 6 C 0.045 3.955 7 H 0.145 0.855 8 O -0.350 6.350 9 C 0.262 3.738 10 O -0.448 6.448 11 N -0.279 5.279 12 C -0.068 4.068 13 C -0.117 4.117 14 C -0.232 4.232 15 C -0.113 4.113 16 C -0.257 4.257 17 C 0.057 3.943 18 C -0.503 4.503 19 H 0.091 0.909 20 C -0.161 4.161 21 N -0.477 5.477 22 Si 0.782 3.218 23 H -0.180 1.180 24 H -0.211 1.211 25 H -0.190 1.190 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.240 0.760 35 H 0.252 0.748 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.096 -5.748 -6.550 11.895 hybrid contribution 0.413 0.669 0.213 0.814 sum -7.684 -5.078 -6.338 11.180 Atomic orbital electron populations 1.21830 0.94683 1.02264 1.02143 1.21447 0.96505 0.93676 1.03043 1.21708 0.91637 0.99196 0.99927 0.90514 1.22106 1.03776 0.99961 0.96498 1.21981 0.96271 0.86031 0.91266 0.85471 1.86542 1.77567 1.53512 1.17381 1.22306 0.78158 0.89503 0.83861 1.90604 1.49337 1.76804 1.28105 1.43248 1.57565 1.12900 1.14204 1.17960 1.07254 0.86453 0.95110 1.21058 0.99875 0.94238 0.96516 1.20810 1.06610 0.96418 0.99367 1.20760 0.98268 0.99536 0.92718 1.20928 1.10136 0.95629 0.99041 1.17744 0.91770 0.92417 0.92334 1.19166 1.04880 1.24812 1.01477 0.90870 1.26532 1.01940 0.94004 0.93611 1.69647 1.31709 1.38741 1.07589 0.85655 0.77242 0.79287 0.79591 1.18006 1.21084 1.18991 0.91795 0.92713 0.92116 0.91413 0.91090 0.91381 0.93486 0.89538 0.75976 0.74790 0.86206 0.85413 0.85323 0.87644 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.68 71.98 0.70 -1.51 16 2 C -0.11 -1.90 5.28 30.60 0.16 -1.73 16 3 C -0.11 -2.23 2.12 -10.79 -0.02 -2.25 16 4 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 5 C -0.17 -3.54 7.87 71.98 0.57 -2.97 16 6 C 0.11 2.92 3.00 29.85 0.09 3.01 16 7 H 0.13 3.34 8.13 -2.39 -0.02 3.32 16 8 O -0.54 -14.82 12.08 -130.35 -1.57 -16.39 16 9 C 0.47 17.30 6.74 87.66 0.59 17.89 16 10 O -0.57 -24.20 13.59 15.59 0.21 -23.98 16 11 N -0.63 -24.97 4.11 -302.29 -1.24 -26.22 16 12 C 0.03 1.24 6.37 38.87 0.25 1.48 16 13 C -0.10 -4.26 8.71 22.36 0.19 -4.06 16 14 C -0.21 -8.63 10.04 22.42 0.22 -8.40 16 15 C -0.09 -3.88 9.97 22.01 0.22 -3.66 16 16 C -0.24 -11.07 6.99 22.47 0.16 -10.91 16 17 C 0.06 3.02 5.11 -21.18 -0.11 2.92 16 18 C -0.47 -24.58 9.09 23.38 0.21 -24.37 16 19 H 0.07 3.87 7.14 -2.91 -0.02 3.85 16 20 C 0.05 2.74 5.48 85.26 0.47 3.21 16 21 N -0.85 -44.53 13.93 21.83 0.30 -44.23 16 22 Si 0.96 42.74 24.43 68.60 1.68 44.41 16 23 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -12.59 6.81 99.48 0.68 -11.91 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.85 6.41 -2.39 -0.02 0.84 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.26 7.38 -2.39 -0.02 1.24 16 31 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 32 H 0.05 1.20 6.11 -2.39 -0.01 1.18 16 33 H 0.09 1.52 6.24 -2.39 -0.01 1.51 16 34 H 0.39 8.90 8.69 -74.06 -0.64 8.26 16 35 H 0.41 15.00 5.56 -92.71 -0.52 14.48 16 36 H 0.12 5.21 6.04 -2.91 -0.02 5.19 16 37 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.11 4.85 4.48 -2.91 -0.01 4.83 16 40 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 Total: -1.00 -61.68 316.35 2.90 -58.78 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.17 Total: 38.99 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.70 Total: -31.36 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -0.94 Total: -70.44 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.36 Total: -40.38 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.68 Total: 44.41 kcal Total: -61.68 2.90 -58.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580843887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.115 kcal (2) G-P(sol) polarization free energy of solvation -61.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds