Wall clock time and date at job start Mon Mar 30 2020 01:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.52991 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46885 * 304.99710 * 4 3 2 6 6 O 1.42896 * 109.47791 * 64.99794 * 4 3 2 7 7 C 1.53004 * 109.47246 * 184.99928 * 4 3 2 8 8 C 1.50699 * 109.47224 * 174.99416 * 7 4 3 9 9 O 1.21289 * 119.99867 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00002 * 179.97438 * 8 7 4 11 11 C 1.39941 * 119.99858 * 184.52809 * 10 8 7 12 12 C 1.39295 * 119.94543 * 144.38273 * 11 10 8 13 13 C 1.38485 * 120.42663 * 180.02562 * 12 11 10 14 14 C 1.37684 * 120.32299 * 359.97274 * 13 12 11 15 15 C 1.40738 * 119.88507 * 0.02562 * 14 13 12 16 16 C 1.41404 * 120.20781 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99904 * 155.37867 * 16 15 14 18 18 C 1.39934 * 120.00460 * 335.37651 * 16 15 14 19 19 N 1.30834 * 119.99587 * 344.60459 * 18 16 15 20 20 Si 1.86796 * 120.00378 * 164.60489 * 18 16 15 21 21 H 1.48500 * 109.47063 * 60.00072 * 20 18 16 22 22 H 1.48496 * 109.47312 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47007 * 300.00240 * 20 18 16 24 24 C 1.38240 * 119.94696 * 324.10281 * 11 10 8 25 25 H 1.08996 * 109.46965 * 299.99836 * 1 2 3 26 26 H 1.09002 * 109.47318 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46732 * 239.99830 * 2 1 3 29 29 H 1.08999 * 109.46820 * 120.00181 * 2 1 3 30 30 H 1.09003 * 109.47176 * 59.99509 * 3 2 1 31 31 H 1.09002 * 109.47080 * 300.00333 * 3 2 1 32 32 H 0.96700 * 113.99744 * 60.00024 * 6 4 3 33 33 H 1.08996 * 109.46921 * 55.00093 * 7 4 3 34 34 H 1.08992 * 109.47043 * 294.99593 * 7 4 3 35 35 H 0.96999 * 120.00345 * 4.52818 * 10 8 7 36 36 H 1.07995 * 119.78603 * 0.02562 * 12 11 10 37 37 H 1.08001 * 119.83480 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.05653 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00089 * 179.97438 * 19 18 16 40 40 H 1.07992 * 120.16269 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 8 4.0459 0.8732 -1.2219 7 6 4.0801 2.8794 0.1251 8 6 5.5820 2.8704 0.2481 9 8 6.1851 1.8182 0.2359 10 7 6.2551 4.0316 0.3706 11 6 7.6544 4.0306 0.3895 12 6 8.3586 5.0749 -0.2053 13 6 9.7433 5.0837 -0.1929 14 6 10.4396 4.0595 0.4086 15 6 9.7416 2.9976 1.0136 16 6 10.4499 1.9419 1.6328 17 1 9.9802 1.3611 2.4128 18 6 11.7593 1.6497 1.2350 19 7 12.2243 2.1314 0.1110 20 14 12.8432 0.5720 2.3088 21 1 12.2109 -0.7621 2.4692 22 1 14.1743 0.4157 1.6693 23 1 13.0062 1.2060 3.6417 24 6 8.3355 2.9961 1.0034 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7603 1.3478 -2.0145 33 1 3.6459 3.3429 1.0109 34 1 3.7914 3.4461 -0.7601 35 1 5.7697 4.8680 0.4457 36 1 7.8211 5.8829 -0.6792 37 1 10.2797 5.8984 -0.6566 38 1 11.5195 4.0709 0.4161 39 1 13.1321 1.9292 -0.1646 40 1 7.7904 2.1880 1.4684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590884528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:56 Heat of formation + Delta-G solvation = -87.504336 kcal Electronic energy + Delta-G solvation = -20899.361664 eV Core-core repulsion = 17677.948850 eV Total energy + Delta-G solvation = -3221.412814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79454 -37.96152 -36.82576 -34.37747 -34.18588 -32.97341 -31.31931 -29.76602 -28.45822 -26.88962 -25.24382 -22.87572 -21.38410 -21.16020 -20.71379 -19.48343 -17.69654 -16.75883 -16.45170 -15.91169 -15.49305 -15.13249 -14.82571 -14.50607 -14.16292 -14.01041 -13.64079 -13.34312 -13.00193 -12.79771 -12.26777 -12.12081 -11.87915 -11.80150 -11.51374 -11.41113 -11.23434 -11.06504 -10.84977 -10.78746 -10.62761 -10.45112 -10.07643 -9.95742 -9.68565 -9.36905 -9.03370 -8.72774 -7.39239 -6.85317 -6.65464 -4.28581 2.70803 2.91030 3.11875 3.15664 3.25079 3.39698 3.66560 4.00839 4.39496 4.57010 4.69242 4.74968 4.83831 4.99361 5.09228 5.27427 5.31923 5.46017 5.48646 5.58497 5.70117 5.78677 5.86864 5.89881 6.15129 6.17042 6.29364 6.44350 6.85084 7.08658 7.12066 7.14817 7.32207 7.63077 7.75165 7.79719 8.03765 8.15116 8.25538 8.33813 8.70083 8.83570 9.00111 9.04689 10.27882 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.003733 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.967140 B = 7498.550723 C = 8459.148109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.151 4.151 4 C 0.122 3.878 5 H 0.105 0.895 6 O -0.542 6.542 7 C -0.174 4.174 8 C 0.499 3.501 9 O -0.498 6.498 10 N -0.674 5.674 11 C 0.150 3.850 12 C -0.264 4.264 13 C -0.093 4.093 14 C -0.174 4.174 15 C 0.117 3.883 16 C -0.456 4.456 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.796 5.796 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.210 4.210 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.365 0.635 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.280 0.720 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 2.118 -0.412 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.063 3.937 5 H 0.123 0.877 6 O -0.345 6.345 7 C -0.215 4.215 8 C 0.285 3.715 9 O -0.371 6.371 10 N -0.318 5.318 11 C 0.058 3.942 12 C -0.285 4.285 13 C -0.113 4.113 14 C -0.194 4.194 15 C 0.114 3.886 16 C -0.486 4.486 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.421 5.421 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.231 4.231 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.211 0.789 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.229 0.771 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.438 0.872 -0.178 16.462 hybrid contribution -0.045 0.567 -0.029 0.570 sum -16.483 1.439 -0.207 16.547 Atomic orbital electron populations 1.21788 0.96126 1.01537 1.01503 1.21462 0.95232 0.96387 1.02933 1.22357 0.96032 0.97900 1.02587 1.21688 0.91267 0.91721 0.89073 0.87711 1.86769 1.76872 1.56100 1.14799 1.22482 0.93961 1.00515 1.04509 1.20471 0.89379 0.84229 0.77460 1.90808 1.69329 1.30462 1.46489 1.43493 1.06264 1.08942 1.73126 1.17450 0.79974 0.97459 0.99314 1.20044 0.94194 1.01528 1.12783 1.20463 0.93014 0.97952 0.99825 1.21402 1.00038 0.93881 1.04079 1.17524 0.90334 0.91473 0.89279 1.19537 0.97173 1.13685 1.18158 0.90545 1.25906 0.98312 0.95720 0.94342 1.69821 1.16924 1.37474 1.17916 0.86336 0.78674 0.80687 0.80820 1.18978 1.20371 1.18884 1.21059 0.94186 1.00036 1.07821 0.92943 0.92936 0.92817 0.91192 0.91895 0.91092 0.91696 0.78924 0.88437 0.88967 0.77093 0.89474 0.89147 0.86087 0.90935 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.09 5.83 -26.73 -0.16 -1.25 16 3 C -0.15 -1.27 4.89 -26.74 -0.13 -1.40 16 4 C 0.12 1.45 2.51 -26.73 -0.07 1.38 16 5 H 0.11 1.47 7.96 -51.93 -0.41 1.06 16 6 O -0.54 -7.59 12.11 -49.66 -0.60 -8.19 16 7 C -0.17 -1.95 5.38 -27.88 -0.15 -2.10 16 8 C 0.50 8.87 7.55 -10.99 -0.08 8.78 16 9 O -0.50 -11.56 12.90 -8.88 -0.11 -11.67 16 10 N -0.67 -12.05 5.33 -9.91 -0.05 -12.10 16 11 C 0.15 3.47 6.28 -83.76 -0.53 2.94 16 12 C -0.26 -5.96 9.97 -39.10 -0.39 -6.35 16 13 C -0.09 -2.24 10.02 -39.69 -0.40 -2.64 16 14 C -0.17 -4.69 8.69 -38.84 -0.34 -5.03 16 15 C 0.12 3.30 5.58 -106.85 -0.60 2.71 16 16 C -0.46 -12.84 9.06 -37.74 -0.34 -13.18 16 17 H 0.08 2.09 7.89 -52.49 -0.41 1.68 16 18 C 0.07 1.96 5.19 -17.34 -0.09 1.87 16 19 N -0.80 -21.45 10.82 55.55 0.60 -20.85 16 20 Si 0.91 19.56 29.59 -169.99 -5.03 14.53 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 24 C -0.21 -5.59 8.43 -38.68 -0.33 -5.92 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.69 7.82 -51.92 -0.41 0.29 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.36 3.60 9.05 45.56 0.41 4.02 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.40 5.34 8.82 -40.82 -0.36 4.98 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.33 6.07 -52.49 -0.32 3.02 16 39 H 0.28 6.85 8.30 -40.82 -0.34 6.52 16 40 H 0.11 3.03 6.28 -52.49 -0.33 2.70 16 LS Contribution 334.80 15.07 5.05 5.05 Total: -1.00 -33.49 334.80 -8.57 -42.05 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.19 Total: 12.12 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -3.22 Total: -20.93 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.55 Total: -32.96 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.72 Total: -19.86 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.49 -8.57 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.450 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds