Wall clock time and date at job start Mon Mar 30 2020 01:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.52991 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46885 * 304.99710 * 4 3 2 6 6 O 1.42896 * 109.47791 * 64.99794 * 4 3 2 7 7 C 1.53004 * 109.47246 * 184.99928 * 4 3 2 8 8 C 1.50699 * 109.47224 * 174.99416 * 7 4 3 9 9 O 1.21289 * 119.99867 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00002 * 179.97438 * 8 7 4 11 11 C 1.39941 * 119.99858 * 184.52809 * 10 8 7 12 12 C 1.39295 * 119.94543 * 144.38273 * 11 10 8 13 13 C 1.38485 * 120.42663 * 180.02562 * 12 11 10 14 14 C 1.37684 * 120.32299 * 359.97274 * 13 12 11 15 15 C 1.40738 * 119.88507 * 0.02562 * 14 13 12 16 16 C 1.41404 * 120.20781 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99904 * 155.37867 * 16 15 14 18 18 C 1.39934 * 120.00460 * 335.37651 * 16 15 14 19 19 N 1.30834 * 119.99587 * 344.60459 * 18 16 15 20 20 Si 1.86796 * 120.00378 * 164.60489 * 18 16 15 21 21 H 1.48500 * 109.47063 * 60.00072 * 20 18 16 22 22 H 1.48496 * 109.47312 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47007 * 300.00240 * 20 18 16 24 24 C 1.38240 * 119.94696 * 324.10281 * 11 10 8 25 25 H 1.08996 * 109.46965 * 299.99836 * 1 2 3 26 26 H 1.09002 * 109.47318 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46732 * 239.99830 * 2 1 3 29 29 H 1.08999 * 109.46820 * 120.00181 * 2 1 3 30 30 H 1.09003 * 109.47176 * 59.99509 * 3 2 1 31 31 H 1.09002 * 109.47080 * 300.00333 * 3 2 1 32 32 H 0.96700 * 113.99744 * 60.00024 * 6 4 3 33 33 H 1.08996 * 109.46921 * 55.00093 * 7 4 3 34 34 H 1.08992 * 109.47043 * 294.99593 * 7 4 3 35 35 H 0.96999 * 120.00345 * 4.52818 * 10 8 7 36 36 H 1.07995 * 119.78603 * 0.02562 * 12 11 10 37 37 H 1.08001 * 119.83480 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.05653 * 180.02562 * 14 13 12 39 39 H 0.96998 * 120.00089 * 179.97438 * 19 18 16 40 40 H 1.07992 * 120.16269 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 8 4.0459 0.8732 -1.2219 7 6 4.0801 2.8794 0.1251 8 6 5.5820 2.8704 0.2481 9 8 6.1851 1.8182 0.2359 10 7 6.2551 4.0316 0.3706 11 6 7.6544 4.0306 0.3895 12 6 8.3586 5.0749 -0.2053 13 6 9.7433 5.0837 -0.1929 14 6 10.4396 4.0595 0.4086 15 6 9.7416 2.9976 1.0136 16 6 10.4499 1.9419 1.6328 17 1 9.9802 1.3611 2.4128 18 6 11.7593 1.6497 1.2350 19 7 12.2243 2.1314 0.1110 20 14 12.8432 0.5720 2.3088 21 1 12.2109 -0.7621 2.4692 22 1 14.1743 0.4157 1.6693 23 1 13.0062 1.2060 3.6417 24 6 8.3355 2.9961 1.0034 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7603 1.3478 -2.0145 33 1 3.6459 3.3429 1.0109 34 1 3.7914 3.4461 -0.7601 35 1 5.7697 4.8680 0.4457 36 1 7.8211 5.8829 -0.6792 37 1 10.2797 5.8984 -0.6566 38 1 11.5195 4.0709 0.4161 39 1 13.1321 1.9292 -0.1646 40 1 7.7904 2.1880 1.4684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590884528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:55 Heat of formation + Delta-G solvation = -110.608532 kcal Electronic energy + Delta-G solvation = -20900.363537 eV Core-core repulsion = 17677.948850 eV Total energy + Delta-G solvation = -3222.414688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26914 -39.33185 -38.33189 -36.14945 -34.99041 -34.79624 -32.38370 -31.75226 -29.99409 -27.93855 -27.24722 -24.04653 -22.88151 -22.46016 -22.07172 -21.03142 -19.52135 -18.15427 -17.44922 -17.29709 -17.15275 -16.57216 -16.43987 -16.01467 -15.33716 -15.11532 -14.94948 -14.69703 -14.50858 -14.14288 -13.94131 -13.59538 -13.15580 -12.94030 -12.82174 -12.64043 -12.60294 -12.49500 -12.22738 -12.16338 -11.94751 -11.63472 -11.57772 -11.49567 -11.21820 -10.91582 -10.78619 -10.44518 -9.39346 -8.72235 -8.61882 -6.38371 0.90511 1.01371 1.34197 1.46525 1.49948 1.86404 2.19298 2.30951 2.72792 3.53588 3.69189 3.75367 3.78483 4.11057 4.21994 4.32250 4.44689 4.47614 4.64014 4.65040 4.70202 4.75687 4.95792 5.03197 5.06708 5.10781 5.13496 5.15172 5.27623 5.29842 5.34284 5.41876 5.50155 5.77648 5.88481 6.07825 6.12710 6.35856 6.68224 6.73127 6.93396 6.97780 7.01449 7.45598 8.33102 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.003733 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.967140 B = 7498.550723 C = 8459.148109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.137 4.137 4 C 0.119 3.881 5 H 0.069 0.931 6 O -0.575 6.575 7 C -0.156 4.156 8 C 0.491 3.509 9 O -0.561 6.561 10 N -0.662 5.662 11 C 0.156 3.844 12 C -0.252 4.252 13 C -0.093 4.093 14 C -0.201 4.201 15 C 0.085 3.915 16 C -0.503 4.503 17 H 0.064 0.936 18 C 0.033 3.967 19 N -0.826 5.826 20 Si 0.985 3.015 21 H -0.266 1.266 22 H -0.261 1.261 23 H -0.257 1.257 24 C -0.239 4.239 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.381 0.619 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.422 0.578 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.289 0.711 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.420 4.151 -0.978 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.174 4.174 4 C 0.059 3.941 5 H 0.087 0.913 6 O -0.381 6.381 7 C -0.196 4.196 8 C 0.280 3.720 9 O -0.438 6.438 10 N -0.309 5.309 11 C 0.063 3.937 12 C -0.273 4.273 13 C -0.112 4.112 14 C -0.221 4.221 15 C 0.082 3.918 16 C -0.532 4.532 17 H 0.082 0.918 18 C -0.181 4.181 19 N -0.452 5.452 20 Si 0.805 3.195 21 H -0.190 1.190 22 H -0.185 1.185 23 H -0.181 1.181 24 C -0.260 4.260 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.230 0.770 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.260 0.740 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.589 2.966 -0.756 18.839 hybrid contribution 0.475 0.000 0.073 0.481 sum -18.114 2.966 -0.684 18.368 Atomic orbital electron populations 1.21750 0.94516 1.01856 1.02387 1.21471 0.96601 0.96812 1.01521 1.22242 0.92851 0.97726 1.04609 1.21711 0.93595 0.91429 0.87341 0.91288 1.86730 1.77761 1.57409 1.16237 1.22511 0.88174 1.00869 1.08004 1.21754 0.92052 0.82903 0.75245 1.90802 1.71228 1.32742 1.49002 1.43443 1.04173 1.10654 1.72605 1.17557 0.82734 0.96154 0.97280 1.20502 0.93850 1.01897 1.11023 1.20860 0.94086 0.97687 0.98580 1.21372 0.99584 0.95080 1.06095 1.17885 0.91391 0.92281 0.90256 1.19752 0.99100 1.15008 1.19363 0.91812 1.26773 0.98911 0.96988 0.95440 1.69865 1.17688 1.38603 1.19073 0.85221 0.76977 0.78288 0.78967 1.19029 1.18457 1.18078 1.21022 0.93976 1.01196 1.09848 0.92055 0.91952 0.92920 0.92771 0.93357 0.89141 0.89350 0.77041 0.84684 0.85011 0.74019 0.84909 0.85930 0.87560 0.90062 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.13 -2.11 5.83 30.59 0.18 -1.93 16 3 C -0.14 -1.89 4.89 30.59 0.15 -1.74 16 4 C 0.12 2.66 2.51 30.59 0.08 2.73 16 5 H 0.07 2.02 7.96 -2.39 -0.02 2.00 16 6 O -0.57 -15.95 12.11 -135.18 -1.64 -17.58 16 7 C -0.16 -2.97 5.38 29.85 0.16 -2.81 16 8 C 0.49 16.95 7.55 87.66 0.66 17.61 16 9 O -0.56 -27.03 12.90 10.74 0.14 -26.90 16 10 N -0.66 -22.25 5.33 -303.65 -1.62 -23.87 16 11 C 0.16 7.15 6.28 38.10 0.24 7.39 16 12 C -0.25 -10.72 9.97 22.58 0.23 -10.49 16 13 C -0.09 -4.37 10.02 22.20 0.22 -4.15 16 14 C -0.20 -11.18 8.69 22.75 0.20 -10.98 16 15 C 0.08 5.04 5.58 -21.31 -0.12 4.92 16 16 C -0.50 -30.16 9.06 23.46 0.21 -29.95 16 17 H 0.06 3.79 7.89 -2.91 -0.02 3.77 16 18 C 0.03 1.81 5.19 85.25 0.44 2.25 16 19 N -0.83 -46.11 10.82 21.82 0.24 -45.88 16 20 Si 0.99 41.38 29.59 68.60 2.03 43.41 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 24 C -0.24 -13.33 8.43 22.85 0.19 -13.14 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 1.06 7.82 -2.38 -0.02 1.04 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.38 6.98 9.05 -74.06 -0.67 6.31 16 33 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.42 9.63 8.82 -92.71 -0.82 8.82 16 36 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.11 6.11 6.07 -2.91 -0.02 6.09 16 39 H 0.29 14.46 8.30 -92.71 -0.77 13.69 16 40 H 0.09 5.08 6.28 -2.91 -0.02 5.07 16 Total: -1.00 -80.05 334.80 2.27 -77.78 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -0.44 Total: 34.46 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 3.55 Total: -41.43 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -1.38 Total: -69.75 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.50 Total: -44.48 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -80.05 2.27 -77.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.825 kcal (2) G-P(sol) polarization free energy of solvation -80.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds