Wall clock time and date at job start Mon Mar 30 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47346 * 2 1 4 4 C 1.52998 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47238 * 55.00182 * 4 3 2 6 6 O 1.42895 * 109.47601 * 295.00147 * 4 3 2 7 7 C 1.53002 * 109.47321 * 174.99913 * 4 3 2 8 8 C 1.50695 * 109.47363 * 185.00011 * 7 4 3 9 9 O 1.21290 * 120.00067 * 0.02562 * 8 7 4 10 10 N 1.34780 * 120.00159 * 180.02562 * 8 7 4 11 11 C 1.39932 * 119.99968 * 174.87535 * 10 8 7 12 12 C 1.39296 * 119.94772 * 146.38038 * 11 10 8 13 13 C 1.38482 * 120.42986 * 179.97438 * 12 11 10 14 14 C 1.37681 * 120.32042 * 0.02562 * 13 12 11 15 15 C 1.40741 * 119.88798 * 0.02562 * 14 13 12 16 16 C 1.41406 * 120.21145 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00744 * 151.73935 * 16 15 14 18 18 C 1.39933 * 119.99992 * 331.73909 * 16 15 14 19 19 N 1.30826 * 120.00044 * 349.00696 * 18 16 15 20 20 Si 1.86802 * 120.00166 * 169.00702 * 18 16 15 21 21 H 1.48508 * 109.47027 * 94.99053 * 20 18 16 22 22 H 1.48495 * 109.47239 * 214.98642 * 20 18 16 23 23 H 1.48494 * 109.47004 * 334.99448 * 20 18 16 24 24 C 1.38246 * 119.95138 * 326.10331 * 11 10 8 25 25 H 1.09003 * 109.47179 * 59.99530 * 1 2 3 26 26 H 1.08997 * 109.47618 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47179 * 299.99966 * 1 2 3 28 28 H 1.08998 * 109.47201 * 240.00165 * 2 1 3 29 29 H 1.09004 * 109.46993 * 119.99955 * 2 1 3 30 30 H 1.08998 * 109.46836 * 59.99942 * 3 2 1 31 31 H 1.08995 * 109.47060 * 299.99802 * 3 2 1 32 32 H 0.96696 * 114.00131 * 300.00336 * 6 4 3 33 33 H 1.08996 * 109.46927 * 305.00791 * 7 4 3 34 34 H 1.08997 * 109.46732 * 65.00341 * 7 4 3 35 35 H 0.97000 * 119.99661 * 354.86994 * 10 8 7 36 36 H 1.07996 * 119.78124 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.83991 * 180.02562 * 13 12 11 38 38 H 1.08005 * 120.05594 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00511 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.15245 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 8 4.0459 0.8732 1.2219 7 6 4.0801 2.8794 -0.1251 8 6 5.5820 2.8703 -0.2480 9 8 6.1851 1.8181 -0.2366 10 7 6.2552 4.0315 -0.3705 11 6 7.6545 4.0318 -0.3767 12 6 8.3463 4.9632 -1.1475 13 6 9.7311 4.9728 -1.1606 14 6 10.4396 4.0604 -0.4115 15 6 9.7542 3.1126 0.3713 16 6 10.4750 2.1720 1.1428 17 1 10.0430 1.7712 2.0478 18 6 11.7483 1.7603 0.7336 19 7 12.1846 2.0721 -0.4597 20 14 12.8252 0.7654 1.8912 21 1 12.6535 -0.6819 1.6059 22 1 14.2472 1.1437 1.6923 23 1 12.4307 1.0432 3.2956 24 6 8.3483 3.1113 0.3866 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7602 1.3477 2.0145 33 1 3.6458 3.3429 -1.0108 34 1 3.7915 3.4461 0.7601 35 1 5.7696 4.8671 -0.4545 36 1 7.7992 5.6826 -1.7386 37 1 10.2578 5.6995 -1.7613 38 1 11.5195 4.0714 -0.4253 39 1 13.0670 1.7865 -0.7435 40 1 7.8127 2.3919 0.9883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590884529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:58 Heat of formation + Delta-G solvation = -111.228605 kcal Electronic energy + Delta-G solvation = -20924.146633 eV Core-core repulsion = 17701.705057 eV Total energy + Delta-G solvation = -3222.441576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27490 -39.33785 -38.33523 -36.13762 -34.99079 -34.78940 -32.38247 -31.74953 -29.99688 -27.95038 -27.24341 -24.06121 -22.89123 -22.46073 -22.07133 -21.00922 -19.52028 -18.15016 -17.43799 -17.39273 -17.01544 -16.60943 -16.45662 -16.04174 -15.30631 -15.06348 -14.95742 -14.75160 -14.51629 -14.13960 -13.92008 -13.63303 -13.12330 -12.95415 -12.83338 -12.66525 -12.57282 -12.48991 -12.21901 -12.16418 -11.94978 -11.63470 -11.56620 -11.49530 -11.22465 -10.94726 -10.80705 -10.49381 -9.36703 -8.70279 -8.57915 -6.39561 0.88992 0.99543 1.34568 1.46256 1.50492 1.88624 2.20253 2.30005 2.75114 3.53076 3.70122 3.72872 3.78938 4.11084 4.21978 4.32062 4.43334 4.47251 4.62303 4.65032 4.70047 4.75603 4.95797 5.03162 5.06521 5.10396 5.12110 5.14570 5.26997 5.29692 5.33914 5.41865 5.50190 5.77894 5.86602 6.07189 6.12316 6.36326 6.68740 6.72407 6.93981 6.96909 7.00985 7.44781 8.36596 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.003823 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.853681 B = 7322.739680 C = 8403.424791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.137 4.137 4 C 0.119 3.881 5 H 0.070 0.930 6 O -0.575 6.575 7 C -0.156 4.156 8 C 0.492 3.508 9 O -0.561 6.561 10 N -0.662 5.662 11 C 0.157 3.843 12 C -0.249 4.249 13 C -0.094 4.094 14 C -0.195 4.195 15 C 0.086 3.914 16 C -0.502 4.502 17 H 0.063 0.937 18 C 0.031 3.969 19 N -0.833 5.833 20 Si 0.986 3.014 21 H -0.267 1.267 22 H -0.258 1.258 23 H -0.259 1.259 24 C -0.234 4.234 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.381 0.619 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.422 0.578 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.287 0.713 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.591 4.121 0.364 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.174 4.174 4 C 0.059 3.941 5 H 0.088 0.912 6 O -0.382 6.382 7 C -0.196 4.196 8 C 0.281 3.719 9 O -0.438 6.438 10 N -0.309 5.309 11 C 0.063 3.937 12 C -0.270 4.270 13 C -0.113 4.113 14 C -0.215 4.215 15 C 0.083 3.917 16 C -0.533 4.533 17 H 0.082 0.918 18 C -0.182 4.182 19 N -0.460 5.460 20 Si 0.806 3.194 21 H -0.192 1.192 22 H -0.182 1.182 23 H -0.183 1.183 24 C -0.256 4.256 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.229 0.771 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.260 0.740 36 H 0.152 0.848 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.768 2.908 -0.185 18.993 hybrid contribution 0.484 0.012 0.606 0.776 sum -18.284 2.920 0.421 18.521 Atomic orbital electron populations 1.21750 0.94522 1.01856 1.02385 1.21469 0.96597 0.96808 1.01527 1.22243 0.92851 0.97731 1.04604 1.21723 0.93602 0.91433 0.87342 0.91160 1.86729 1.77773 1.57415 1.16252 1.22515 0.88213 1.00880 1.08002 1.21745 0.92048 0.82852 0.75239 1.90809 1.71423 1.32746 1.48795 1.43475 1.04122 1.10593 1.72726 1.17545 0.82757 0.97187 0.96205 1.20521 0.93990 1.05323 1.07159 1.20871 0.94022 0.98072 0.98347 1.21361 0.99516 0.97163 1.03490 1.17867 0.91283 0.91190 0.91359 1.19758 1.01446 1.23003 1.09050 0.91829 1.26750 0.98574 0.96345 0.96547 1.69854 1.19121 1.38859 1.18134 0.85152 0.77362 0.78097 0.78785 1.19205 1.18203 1.18316 1.20936 0.93909 1.03903 1.06829 0.92004 0.92918 0.92010 0.93276 0.92838 0.89456 0.89045 0.77091 0.84501 0.85187 0.73997 0.84842 0.85866 0.87657 0.90225 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.13 -2.11 5.83 30.59 0.18 -1.93 16 3 C -0.14 -1.89 4.89 30.59 0.15 -1.74 16 4 C 0.12 2.65 2.51 30.59 0.08 2.73 16 5 H 0.07 2.03 7.95 -2.39 -0.02 2.01 16 6 O -0.58 -16.16 12.11 -135.20 -1.64 -17.79 16 7 C -0.16 -2.98 5.38 29.85 0.16 -2.82 16 8 C 0.49 16.93 7.44 87.65 0.65 17.58 16 9 O -0.56 -27.00 13.13 10.72 0.14 -26.86 16 10 N -0.66 -22.16 5.34 -303.64 -1.62 -23.78 16 11 C 0.16 7.13 6.26 38.10 0.24 7.37 16 12 C -0.25 -10.56 9.97 22.58 0.23 -10.33 16 13 C -0.09 -4.40 10.02 22.20 0.22 -4.18 16 14 C -0.20 -10.82 8.66 22.75 0.20 -10.63 16 15 C 0.09 5.09 5.55 -21.31 -0.12 4.97 16 16 C -0.50 -30.16 9.06 23.46 0.21 -29.95 16 17 H 0.06 3.78 7.87 -2.91 -0.02 3.76 16 18 C 0.03 1.70 5.25 85.25 0.45 2.15 16 19 N -0.83 -46.75 10.82 21.82 0.24 -46.51 16 20 Si 0.99 41.72 29.57 68.60 2.03 43.75 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 24 C -0.23 -13.01 8.39 22.85 0.19 -12.81 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.05 7.82 -2.38 -0.02 1.04 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.38 7.23 9.05 -74.06 -0.67 6.56 16 33 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.42 9.55 8.82 -92.71 -0.82 8.73 16 36 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 38 H 0.11 6.06 6.18 -2.91 -0.02 6.04 16 39 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 40 H 0.08 4.89 6.44 -2.91 -0.02 4.88 16 Total: -1.00 -80.13 335.11 2.26 -77.87 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.44 Total: 34.03 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 3.55 Total: -40.71 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -1.38 Total: -70.29 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.50 Total: -44.65 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -80.13 2.26 -77.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.355 kcal (2) G-P(sol) polarization free energy of solvation -80.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds