Wall clock time and date at job start Mon Mar 30 2020 01:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 C 1.53001 * 109.47170 * 119.99824 * 2 1 3 5 5 C 1.52998 * 109.46978 * 65.00147 * 4 2 1 6 6 O 1.42904 * 109.47142 * 179.97438 * 5 4 2 7 7 C 1.35931 * 117.00081 * 179.97438 * 6 5 4 8 8 C 1.38544 * 120.09533 * 359.95057 * 7 6 5 9 9 C 1.38242 * 120.02513 * 180.02562 * 8 7 6 10 10 C 1.38394 * 120.22348 * 0.02562 * 9 8 7 11 11 C 1.38087 * 120.19706 * 0.02562 * 10 9 8 12 12 C 1.38936 * 119.96901 * 359.97438 * 11 10 9 13 13 N 1.39568 * 120.11121 * 180.02562 * 12 11 10 14 14 C 1.34775 * 120.00175 * 24.84325 * 13 12 11 15 15 O 1.21772 * 119.99494 * 5.53170 * 14 13 12 16 16 C 1.41812 * 120.00079 * 185.52119 * 14 13 12 17 17 H 1.08002 * 120.00148 * 0.02562 * 16 14 13 18 18 C 1.40135 * 120.00024 * 179.97438 * 16 14 13 19 19 N 1.30637 * 119.99655 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00316 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47522 * 60.00189 * 20 18 16 22 22 H 1.48499 * 109.47375 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47000 * 300.00396 * 20 18 16 24 24 H 1.08999 * 109.46726 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46980 * 299.99974 * 1 2 3 26 26 H 1.08995 * 109.46876 * 59.99936 * 1 2 3 27 27 H 1.09000 * 109.47320 * 240.00055 * 2 1 3 28 28 H 1.09002 * 109.46770 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47374 * 299.99759 * 3 2 1 30 30 H 1.09000 * 109.47054 * 59.99892 * 3 2 1 31 31 H 1.09006 * 109.47190 * 305.00353 * 4 2 1 32 32 H 1.08996 * 109.47259 * 185.00236 * 4 2 1 33 33 H 1.08995 * 109.47428 * 60.00240 * 5 4 2 34 34 H 1.09004 * 109.47051 * 299.99854 * 5 4 2 35 35 H 1.08007 * 119.98682 * 0.03067 * 8 7 6 36 36 H 1.08005 * 119.88722 * 180.28743 * 9 8 7 37 37 H 1.08006 * 119.90297 * 179.97438 * 10 9 8 38 38 H 1.07993 * 120.01872 * 179.97438 * 11 10 9 39 39 H 0.97007 * 119.99989 * 204.83805 * 13 12 11 40 40 H 0.97004 * 119.99360 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 8 2.1122 -2.8692 2.3545 7 6 1.8349 -4.1959 2.4575 8 6 1.1189 -4.8356 1.4588 9 6 0.8373 -6.1849 1.5653 10 6 1.2680 -6.9015 2.6681 11 6 1.9814 -6.2729 3.6695 12 6 2.2690 -4.9172 3.5707 13 7 2.9903 -4.2791 4.5808 14 6 3.8215 -4.9905 5.3679 15 8 4.0204 -6.1691 5.1350 16 6 4.4645 -4.3665 6.4671 17 1 4.2879 -3.3213 6.6738 18 6 5.3283 -5.1064 7.2858 19 7 5.5415 -6.3708 7.0361 20 14 6.1747 -4.2848 8.7341 21 1 5.1511 -3.7609 9.6738 22 1 7.0297 -5.2760 9.4353 23 1 7.0168 -3.1639 8.2444 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0700 -2.6550 0.3003 34 1 0.5490 -2.2723 1.1421 35 1 0.7806 -4.2800 0.5966 36 1 0.2829 -6.6823 0.7832 37 1 1.0447 -7.9553 2.7463 38 1 2.3158 -6.8348 4.5290 39 1 2.8936 -3.3234 4.7164 40 1 6.1397 -6.8829 7.6026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594383103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:19 Heat of formation + Delta-G solvation = -68.758196 kcal Electronic energy + Delta-G solvation = -21093.612829 eV Core-core repulsion = 17873.012908 eV Total energy + Delta-G solvation = -3220.599921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86131 -38.07361 -36.85866 -36.01323 -33.45005 -32.37096 -30.16859 -29.46967 -28.33818 -27.40547 -26.27048 -23.99953 -22.03278 -21.37661 -20.24744 -19.64682 -17.79478 -17.27837 -16.12192 -16.06427 -15.65485 -15.08777 -14.84170 -14.37032 -14.14614 -13.89101 -13.51694 -13.29382 -13.27383 -12.60943 -12.48950 -12.39627 -12.21891 -11.75888 -11.58083 -11.37721 -11.15524 -11.08660 -11.04674 -10.90807 -10.86725 -10.63879 -10.47559 -10.35600 -10.33358 -9.35734 -8.84653 -7.98122 -7.57638 -6.73526 -6.33550 -4.86021 2.05361 2.08959 3.09475 3.14414 3.16547 3.48158 4.00865 4.29360 4.58622 4.64390 4.66528 4.74170 4.78026 5.06878 5.21615 5.30141 5.38673 5.43432 5.44910 5.56542 5.59759 5.67083 5.73312 5.76555 5.82699 5.84810 5.96531 6.08075 6.13579 6.18781 6.34557 6.58039 6.83841 6.92745 7.22402 7.26484 7.50258 7.76948 7.93435 8.10527 8.32627 8.83433 9.35738 10.41605 10.62329 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.004432 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.311921 B = 6316.045061 C = 7914.693153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.115 4.115 5 C 0.063 3.937 6 O -0.317 6.317 7 C 0.061 3.939 8 C -0.187 4.187 9 C -0.139 4.139 10 C -0.131 4.131 11 C -0.113 4.113 12 C 0.175 3.825 13 N -0.690 5.690 14 C 0.544 3.456 15 O -0.567 6.567 16 C -0.537 4.537 17 H 0.070 0.930 18 C 0.088 3.912 19 N -0.748 5.748 20 Si 0.913 3.087 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.158 0.842 39 H 0.395 0.605 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 10.276 -11.419 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.012 4.012 6 O -0.231 6.231 7 C 0.013 3.987 8 C -0.207 4.207 9 C -0.159 4.159 10 C -0.150 4.150 11 C -0.134 4.134 12 C 0.075 3.925 13 N -0.331 5.331 14 C 0.354 3.646 15 O -0.452 6.452 16 C -0.572 4.572 17 H 0.088 0.912 18 C -0.134 4.134 19 N -0.376 5.376 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.175 0.825 39 H 0.228 0.772 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.162 9.412 -11.284 16.809 hybrid contribution 0.249 0.849 0.419 0.979 sum -7.913 10.261 -10.865 16.910 Atomic orbital electron populations 1.21939 0.95163 1.01988 1.01871 1.21038 0.95967 0.96380 0.97814 1.21820 1.01187 0.95548 1.01810 1.21601 1.02287 0.92788 0.98601 1.22726 0.98538 0.92537 0.87422 1.85975 1.75094 1.19379 1.42691 1.18754 1.02044 0.83140 0.94742 1.20799 1.04635 0.96112 0.99107 1.20643 1.02952 0.93531 0.98804 1.20941 0.99874 0.99476 0.94745 1.21574 0.97396 0.93170 1.01262 1.17462 0.94781 0.92329 0.87962 1.43997 1.44468 1.11732 1.32935 1.17043 0.78548 0.86544 0.82502 1.90585 1.65379 1.16257 1.72941 1.20036 1.27712 0.98053 1.11449 0.91214 1.25755 0.95282 0.94385 0.98028 1.70006 1.26686 1.07212 1.33675 0.86338 0.79501 0.79618 0.80831 1.19043 1.20357 1.19071 0.92443 0.92426 0.92705 0.91040 0.92483 0.92643 0.92499 0.90802 0.90754 0.92709 0.92426 0.86545 0.87061 0.86645 0.82460 0.77157 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.95 37.16 0.33 -0.87 16 2 C -0.09 -0.79 2.92 -90.62 -0.26 -1.06 16 3 C -0.15 -1.12 9.19 37.16 0.34 -0.77 16 4 C -0.12 -1.24 5.05 -26.73 -0.14 -1.38 16 5 C 0.06 0.81 4.50 37.16 0.17 0.98 16 6 O -0.32 -5.56 9.55 -19.52 -0.19 -5.74 16 7 C 0.06 1.17 6.71 -38.97 -0.26 0.91 16 8 C -0.19 -3.13 9.03 -39.47 -0.36 -3.48 16 9 C -0.14 -2.30 10.04 -39.52 -0.40 -2.69 16 10 C -0.13 -2.44 10.04 -39.58 -0.40 -2.83 16 11 C -0.11 -2.54 8.71 -39.38 -0.34 -2.88 16 12 C 0.18 3.96 6.45 -83.58 -0.54 3.42 16 13 N -0.69 -16.69 5.26 -12.30 -0.06 -16.76 16 14 C 0.54 15.52 7.38 -14.89 -0.11 15.41 16 15 O -0.57 -17.83 12.04 5.12 0.06 -17.77 16 16 C -0.54 -14.96 9.32 -37.51 -0.35 -15.30 16 17 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 18 C 0.09 2.40 5.50 -17.35 -0.10 2.30 16 19 N -0.75 -21.70 11.73 55.55 0.65 -21.05 16 20 Si 0.91 19.58 29.56 -169.99 -5.02 14.56 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 34 H 0.06 0.67 6.08 -51.93 -0.32 0.36 16 35 H 0.12 1.59 6.30 -52.48 -0.33 1.26 16 36 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 37 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.16 4.02 5.78 -52.49 -0.30 3.72 16 39 H 0.40 8.66 8.30 -40.82 -0.34 8.32 16 40 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -32.35 331.33 -7.78 -40.13 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.80 Total: 9.90 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.41 Total: -8.25 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.59 Total: -37.81 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.12 Total: -23.52 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.35 -7.78 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594383103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.629 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds