Wall clock time and date at job start Mon Mar 30 2020 01:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46969 * 2 1 4 4 C 1.53001 * 109.47170 * 119.99824 * 2 1 3 5 5 C 1.52998 * 109.46978 * 65.00147 * 4 2 1 6 6 O 1.42904 * 109.47142 * 179.97438 * 5 4 2 7 7 C 1.35931 * 117.00081 * 179.97438 * 6 5 4 8 8 C 1.38544 * 120.09533 * 359.95057 * 7 6 5 9 9 C 1.38242 * 120.02513 * 180.02562 * 8 7 6 10 10 C 1.38394 * 120.22348 * 0.02562 * 9 8 7 11 11 C 1.38087 * 120.19706 * 0.02562 * 10 9 8 12 12 C 1.38936 * 119.96901 * 359.97438 * 11 10 9 13 13 N 1.39568 * 120.11121 * 180.02562 * 12 11 10 14 14 C 1.34775 * 120.00175 * 24.84325 * 13 12 11 15 15 O 1.21772 * 119.99494 * 5.53170 * 14 13 12 16 16 C 1.41812 * 120.00079 * 185.52119 * 14 13 12 17 17 H 1.08002 * 120.00148 * 0.02562 * 16 14 13 18 18 C 1.40135 * 120.00024 * 179.97438 * 16 14 13 19 19 N 1.30637 * 119.99655 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00316 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47522 * 60.00189 * 20 18 16 22 22 H 1.48499 * 109.47375 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47000 * 300.00396 * 20 18 16 24 24 H 1.08999 * 109.46726 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46980 * 299.99974 * 1 2 3 26 26 H 1.08995 * 109.46876 * 59.99936 * 1 2 3 27 27 H 1.09000 * 109.47320 * 240.00055 * 2 1 3 28 28 H 1.09002 * 109.46770 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47374 * 299.99759 * 3 2 1 30 30 H 1.09000 * 109.47054 * 59.99892 * 3 2 1 31 31 H 1.09006 * 109.47190 * 305.00353 * 4 2 1 32 32 H 1.08996 * 109.47259 * 185.00236 * 4 2 1 33 33 H 1.08995 * 109.47428 * 60.00240 * 5 4 2 34 34 H 1.09004 * 109.47051 * 299.99854 * 5 4 2 35 35 H 1.08007 * 119.98682 * 0.03067 * 8 7 6 36 36 H 1.08005 * 119.88722 * 180.28743 * 9 8 7 37 37 H 1.08006 * 119.90297 * 179.97438 * 10 9 8 38 38 H 1.07993 * 120.01872 * 179.97438 * 11 10 9 39 39 H 0.97007 * 119.99989 * 204.83805 * 13 12 11 40 40 H 0.97004 * 119.99360 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 8 2.1122 -2.8692 2.3545 7 6 1.8349 -4.1959 2.4575 8 6 1.1189 -4.8356 1.4588 9 6 0.8373 -6.1849 1.5653 10 6 1.2680 -6.9015 2.6681 11 6 1.9814 -6.2729 3.6695 12 6 2.2690 -4.9172 3.5707 13 7 2.9903 -4.2791 4.5808 14 6 3.8215 -4.9905 5.3679 15 8 4.0204 -6.1691 5.1350 16 6 4.4645 -4.3665 6.4671 17 1 4.2879 -3.3213 6.6738 18 6 5.3283 -5.1064 7.2858 19 7 5.5415 -6.3708 7.0361 20 14 6.1747 -4.2848 8.7341 21 1 5.1511 -3.7609 9.6738 22 1 7.0297 -5.2760 9.4353 23 1 7.0168 -3.1639 8.2444 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0700 -2.6550 0.3003 34 1 0.5490 -2.2723 1.1421 35 1 0.7806 -4.2800 0.5966 36 1 0.2829 -6.6823 0.7832 37 1 1.0447 -7.9553 2.7463 38 1 2.3158 -6.8348 4.5290 39 1 2.8936 -3.3234 4.7164 40 1 6.1397 -6.8829 7.6026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594383103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:18 Heat of formation + Delta-G solvation = -89.198806 kcal Electronic energy + Delta-G solvation = -21094.499200 eV Core-core repulsion = 17873.012908 eV Total energy + Delta-G solvation = -3221.486292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36561 -39.72823 -38.26056 -37.07053 -35.34792 -34.46198 -31.30768 -31.03356 -29.79285 -28.23010 -28.00497 -25.11576 -23.66191 -22.76633 -21.64825 -20.83923 -19.53824 -18.87234 -17.71841 -17.62216 -17.14614 -16.55624 -15.84881 -15.80883 -15.63269 -15.05557 -14.97094 -14.62084 -14.56586 -14.38930 -13.87365 -13.48508 -13.23246 -13.04883 -12.90099 -12.75333 -12.68549 -12.62540 -12.44078 -12.13228 -12.06200 -11.81840 -11.74628 -11.50521 -11.34743 -11.15079 -10.83911 -9.84703 -9.36661 -8.44773 -8.38649 -7.02276 0.53636 0.57664 1.38149 1.41373 1.53923 2.19963 2.25876 2.36130 2.92112 3.02397 3.64559 3.84229 3.88792 4.01690 4.06894 4.16875 4.24968 4.31464 4.45529 4.50515 4.64212 4.73245 4.80134 4.82946 4.91346 4.99579 5.04435 5.10913 5.12152 5.19414 5.29102 5.35734 5.44849 5.45850 5.49635 5.71128 5.87318 5.95023 6.15685 6.23568 6.67524 6.72177 7.38546 8.37011 8.55257 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.004432 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.311921 B = 6316.045061 C = 7914.693153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.112 4.112 5 C 0.055 3.945 6 O -0.335 6.335 7 C 0.067 3.933 8 C -0.180 4.180 9 C -0.117 4.117 10 C -0.138 4.138 11 C -0.139 4.139 12 C 0.127 3.873 13 N -0.688 5.688 14 C 0.529 3.471 15 O -0.610 6.610 16 C -0.568 4.568 17 H 0.086 0.914 18 C 0.033 3.967 19 N -0.800 5.800 20 Si 1.003 2.997 21 H -0.253 1.253 22 H -0.269 1.269 23 H -0.254 1.254 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.402 0.598 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 11.964 -13.178 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.019 4.019 6 O -0.250 6.250 7 C 0.019 3.981 8 C -0.199 4.199 9 C -0.136 4.136 10 C -0.156 4.156 11 C -0.161 4.161 12 C 0.029 3.971 13 N -0.331 5.331 14 C 0.339 3.661 15 O -0.498 6.498 16 C -0.602 4.602 17 H 0.105 0.895 18 C -0.186 4.186 19 N -0.428 5.428 20 Si 0.821 3.179 21 H -0.177 1.177 22 H -0.194 1.194 23 H -0.178 1.178 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.131 0.869 39 H 0.236 0.764 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.359 11.130 -13.093 19.567 hybrid contribution 0.482 0.343 0.779 0.978 sum -8.877 11.473 -12.313 19.028 Atomic orbital electron populations 1.21943 0.94421 1.02176 1.02404 1.21022 0.96519 0.96532 0.96610 1.21824 1.01036 0.95118 1.02397 1.21622 1.01675 0.91859 0.99799 1.23093 0.99679 0.93056 0.86100 1.85971 1.75456 1.18600 1.45014 1.18797 1.01275 0.83976 0.94024 1.21288 1.02915 0.96504 0.99221 1.21165 1.00811 0.93360 0.98278 1.21185 0.99241 1.00730 0.94465 1.21333 0.99672 0.93527 1.01563 1.17745 0.97021 0.93014 0.89362 1.43562 1.44428 1.11713 1.33362 1.17415 0.79089 0.86349 0.83295 1.90548 1.67025 1.17949 1.74291 1.20562 1.28526 0.99110 1.12039 0.89548 1.27029 0.95448 0.94822 1.01260 1.70158 1.27727 1.09377 1.35548 0.84996 0.78293 0.78527 0.76063 1.17709 1.19360 1.17800 0.92394 0.92719 0.91429 0.90356 0.92796 0.91338 0.92658 0.91335 0.91837 0.91580 0.90623 0.82436 0.82322 0.84526 0.86947 0.76394 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.95 71.98 0.64 -1.31 16 2 C -0.09 -1.29 2.92 -10.79 -0.03 -1.32 16 3 C -0.15 -1.94 9.19 71.98 0.66 -1.28 16 4 C -0.11 -2.24 5.05 30.59 0.15 -2.09 16 5 C 0.06 1.28 4.50 71.98 0.32 1.60 16 6 O -0.34 -11.50 9.55 -92.77 -0.89 -12.39 16 7 C 0.07 2.54 6.71 22.66 0.15 2.69 16 8 C -0.18 -5.41 9.03 22.34 0.20 -5.21 16 9 C -0.12 -3.43 10.04 22.31 0.22 -3.20 16 10 C -0.14 -5.01 10.04 22.27 0.22 -4.79 16 11 C -0.14 -6.62 8.71 22.40 0.20 -6.42 16 12 C 0.13 5.97 6.45 38.40 0.25 6.22 16 13 N -0.69 -35.25 5.26 -311.03 -1.64 -36.88 16 14 C 0.53 32.08 7.38 85.13 0.63 32.71 16 15 O -0.61 -41.24 12.04 -4.58 -0.06 -41.29 16 16 C -0.57 -32.87 9.32 23.61 0.22 -32.65 16 17 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 18 C 0.03 1.82 5.50 85.33 0.47 2.29 16 19 N -0.80 -48.50 11.73 21.85 0.26 -48.24 16 20 Si 1.00 40.61 29.56 68.60 2.03 42.64 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 24 H 0.06 0.73 6.57 -2.39 -0.02 0.72 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.40 7.67 -2.39 -0.02 1.38 16 34 H 0.08 1.50 6.08 -2.38 -0.01 1.49 16 35 H 0.16 3.43 6.30 -2.91 -0.02 3.41 16 36 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.11 6.32 5.78 -2.91 -0.02 6.30 16 39 H 0.40 18.56 8.30 -92.70 -0.77 17.79 16 40 H 0.28 15.25 8.29 -92.71 -0.77 14.48 16 Total: -1.00 -75.96 331.33 4.29 -71.66 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: 0.27 Total: 37.26 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.31 Total: -12.76 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.38 Total: -85.12 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.94 Total: -53.68 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -75.96 4.29 -71.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594383103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.534 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds