Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47682 * 2 1 4 4 C 1.50704 * 109.46834 * 239.99611 * 2 1 3 5 5 H 1.07998 * 120.00036 * 240.00199 * 4 2 1 6 6 C 1.37875 * 119.99623 * 60.00612 * 4 2 1 7 7 N 1.31508 * 120.00179 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46805 * 59.99615 * 8 6 4 10 10 H 1.48499 * 109.47159 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47155 * 300.00247 * 8 6 4 12 12 C 1.53007 * 109.46922 * 120.00009 * 2 1 3 13 13 N 1.46498 * 109.47194 * 300.00083 * 12 2 1 14 14 C 1.34774 * 120.00159 * 180.02562 * 13 12 2 15 15 O 1.21555 * 119.99766 * 359.97438 * 14 13 12 16 16 C 1.47842 * 120.00091 * 179.97438 * 14 13 12 17 17 C 1.39577 * 120.14253 * 179.97438 * 16 14 13 18 18 C 1.37961 * 119.85136 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.14408 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.85322 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47152 * 90.00527 * 20 19 18 22 22 C 1.38360 * 120.29536 * 0.23424 * 19 18 17 23 23 C 1.37958 * 120.14241 * 359.48587 * 22 19 18 24 24 H 1.08999 * 109.46993 * 300.00298 * 1 2 3 25 25 H 1.09005 * 109.47192 * 59.99959 * 1 2 3 26 26 H 1.08998 * 109.47809 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47388 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46841 * 300.00256 * 3 2 1 29 29 H 1.08999 * 109.47150 * 59.99798 * 3 2 1 30 30 H 0.97004 * 119.99754 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.46942 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.46561 * 59.99890 * 12 2 1 33 33 H 0.97005 * 119.99327 * 359.97438 * 13 12 2 34 34 H 1.07994 * 120.07744 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.92867 * 180.02562 * 18 17 16 36 36 H 1.08997 * 109.47198 * 330.00204 * 20 19 18 37 37 H 1.09008 * 109.47393 * 209.99921 * 20 19 18 38 38 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.93147 * 179.74152 * 22 19 18 40 40 H 1.08003 * 120.07281 * 180.24846 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3224 -1.1197 -4.0080 9 1 1.8278 -2.5200 -4.0081 10 1 1.8268 -0.4201 -5.2205 11 1 3.8074 -1.1193 -4.0077 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 6 1.8775 -0.4909 3.6696 15 8 2.5764 -1.4792 3.7811 16 6 1.3852 0.2064 4.8767 17 6 1.7205 -0.2679 6.1458 18 6 1.2573 0.3871 7.2682 19 6 0.4616 1.5115 7.1377 20 6 -0.0412 2.2215 8.3681 21 8 0.8995 3.2244 8.7573 22 6 0.1211 1.9837 5.8826 23 6 0.5824 1.3414 4.7521 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 3.1300 1.4423 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.7082 1.1608 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6765 -1.7489 1.2492 33 1 0.9942 0.7582 2.3563 34 1 2.3411 -1.1456 6.2491 35 1 1.5163 0.0214 8.2509 36 1 -0.1622 1.5027 9.1785 37 1 -1.0016 2.6892 8.1509 38 1 0.6404 3.7225 9.5446 39 1 -0.5038 2.8594 5.7875 40 1 0.3192 1.7134 3.7729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597764317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -70.251256 kcal Electronic energy + Delta-G solvation = -21027.352559 eV Core-core repulsion = 17806.687894 eV Total energy + Delta-G solvation = -3220.664665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.08514 -38.59924 -36.81321 -36.28342 -33.43107 -32.00784 -31.16428 -30.60282 -26.97715 -25.73876 -25.51050 -24.73202 -22.74010 -22.19218 -20.08790 -18.87558 -17.82094 -17.78641 -16.16633 -15.82168 -15.65918 -15.00726 -14.80487 -14.77222 -14.44844 -13.90975 -13.64547 -13.41752 -13.08030 -12.92152 -12.79072 -12.32873 -12.18757 -11.46881 -11.38325 -11.25320 -11.15814 -10.85340 -10.73513 -10.42787 -10.39595 -10.21121 -9.65981 -9.64663 -9.27897 -9.08811 -8.99789 -8.80840 -8.45371 -8.31241 -6.02568 -4.12748 0.75493 1.28182 2.98664 3.30241 3.34448 3.37831 3.68173 3.84064 4.17337 4.39951 4.56360 4.68672 4.81540 4.93453 5.05008 5.12256 5.24207 5.27054 5.48945 5.68925 5.87526 6.15384 6.20591 6.31642 6.34444 6.35881 6.49778 6.74806 6.76508 6.80723 6.93014 6.99955 7.00867 7.24957 7.34185 7.54488 7.68670 7.99917 8.01732 8.13963 8.37475 8.64659 8.87684 9.53097 10.98907 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038519 B = 0.003347 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.737947 B = 8364.157363 C = 8823.654142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.545 3.455 15 O -0.548 6.548 16 C -0.118 4.118 17 C -0.066 4.066 18 C -0.109 4.109 19 C -0.080 4.080 20 C 0.116 3.884 21 O -0.566 6.566 22 C -0.106 4.106 23 C -0.089 4.089 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.398 0.602 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.380 0.620 39 H 0.128 0.872 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 4.802 19.248 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.008 3.992 13 N -0.360 5.360 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.121 4.121 17 C -0.085 4.085 18 C -0.127 4.127 19 C -0.080 4.080 20 C 0.039 3.961 21 O -0.372 6.372 22 C -0.124 4.124 23 C -0.108 4.108 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.227 0.773 39 H 0.146 0.854 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.847 3.978 18.593 19.399 hybrid contribution -0.290 0.149 -0.453 0.559 sum -4.137 4.127 18.140 19.058 Atomic orbital electron populations 1.21838 0.97746 0.99250 1.00056 1.18359 0.92810 0.92777 0.90526 1.21838 0.98688 0.98318 1.00061 1.20947 1.31588 1.12146 0.89873 0.92437 1.24874 0.94832 0.94912 0.98844 1.69790 1.36600 1.22748 1.23352 0.86624 0.79255 0.79786 0.82139 1.20274 1.21320 1.20262 1.21775 0.98302 0.95869 0.83215 1.46268 1.52172 1.31614 1.05910 1.18279 0.80834 0.84281 0.83508 1.90734 1.38645 1.26458 1.86956 1.20224 1.00422 0.97072 0.94364 1.21278 0.97337 0.99180 0.90732 1.20997 0.97387 0.95569 0.98747 1.19768 0.98448 0.95641 0.94150 1.21010 0.91225 0.89962 0.93937 1.86594 1.48378 1.51903 1.50342 1.20966 1.00321 0.99639 0.91502 1.21390 0.95920 0.94303 0.99193 0.97595 0.89517 0.95362 0.95352 0.89522 0.97582 0.92930 0.92493 0.92496 0.76604 0.84464 0.85472 0.92599 0.92539 0.77309 0.85394 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 4 C -0.51 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 13 N -0.71 -13.12 4.91 -61.25 -0.30 -13.42 16 14 C 0.54 10.09 7.77 -12.33 -0.10 10.00 16 15 O -0.55 -11.90 16.35 5.32 0.09 -11.81 16 16 C -0.12 -1.77 5.87 -104.97 -0.62 -2.39 16 17 C -0.07 -0.90 9.60 -39.18 -0.38 -1.28 16 18 C -0.11 -1.22 9.68 -39.64 -0.38 -1.60 16 19 C -0.08 -0.85 5.52 -104.53 -0.58 -1.43 16 20 C 0.12 0.89 7.16 36.01 0.26 1.15 16 21 O -0.57 -4.85 13.64 -35.23 -0.48 -5.33 16 22 C -0.11 -1.18 9.68 -39.64 -0.38 -1.56 16 23 C -0.09 -1.14 9.54 -39.18 -0.37 -1.52 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.40 6.61 4.20 -40.82 -0.17 6.44 16 34 H 0.14 1.85 7.65 -52.49 -0.40 1.45 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.06 0.34 8.08 -51.92 -0.42 -0.08 16 38 H 0.38 1.28 9.12 45.56 0.42 1.70 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.13 1.51 6.41 -52.48 -0.34 1.17 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -30.92 328.39 -7.41 -38.34 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.75 Total: 6.49 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.41 Total: -11.87 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.22 Total: -36.50 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.39 Total: -17.15 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.92 -7.41 -38.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597764317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.916 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds