Wall clock time and date at job start Mon Mar 30 2020 01:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47682 * 2 1 4 4 C 1.50704 * 109.46834 * 239.99611 * 2 1 3 5 5 H 1.07998 * 120.00036 * 240.00199 * 4 2 1 6 6 C 1.37875 * 119.99623 * 60.00612 * 4 2 1 7 7 N 1.31508 * 120.00179 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46805 * 59.99615 * 8 6 4 10 10 H 1.48499 * 109.47159 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47155 * 300.00247 * 8 6 4 12 12 C 1.53007 * 109.46922 * 120.00009 * 2 1 3 13 13 N 1.46498 * 109.47194 * 300.00083 * 12 2 1 14 14 C 1.34774 * 120.00159 * 180.02562 * 13 12 2 15 15 O 1.21555 * 119.99766 * 359.97438 * 14 13 12 16 16 C 1.47842 * 120.00091 * 179.97438 * 14 13 12 17 17 C 1.39577 * 120.14253 * 179.97438 * 16 14 13 18 18 C 1.37961 * 119.85136 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.14408 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.85322 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47152 * 90.00527 * 20 19 18 22 22 C 1.38360 * 120.29536 * 0.23424 * 19 18 17 23 23 C 1.37958 * 120.14241 * 359.48587 * 22 19 18 24 24 H 1.08999 * 109.46993 * 300.00298 * 1 2 3 25 25 H 1.09005 * 109.47192 * 59.99959 * 1 2 3 26 26 H 1.08998 * 109.47809 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47388 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46841 * 300.00256 * 3 2 1 29 29 H 1.08999 * 109.47150 * 59.99798 * 3 2 1 30 30 H 0.97004 * 119.99754 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.46942 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.46561 * 59.99890 * 12 2 1 33 33 H 0.97005 * 119.99327 * 359.97438 * 13 12 2 34 34 H 1.07994 * 120.07744 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.92867 * 180.02562 * 18 17 16 36 36 H 1.08997 * 109.47198 * 330.00204 * 20 19 18 37 37 H 1.09008 * 109.47393 * 209.99921 * 20 19 18 38 38 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.93147 * 179.74152 * 22 19 18 40 40 H 1.08003 * 120.07281 * 180.24846 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3224 -1.1197 -4.0080 9 1 1.8278 -2.5200 -4.0081 10 1 1.8268 -0.4201 -5.2205 11 1 3.8074 -1.1193 -4.0077 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 6 1.8775 -0.4909 3.6696 15 8 2.5764 -1.4792 3.7811 16 6 1.3852 0.2064 4.8767 17 6 1.7205 -0.2679 6.1458 18 6 1.2573 0.3871 7.2682 19 6 0.4616 1.5115 7.1377 20 6 -0.0412 2.2215 8.3681 21 8 0.8995 3.2244 8.7573 22 6 0.1211 1.9837 5.8826 23 6 0.5824 1.3414 4.7521 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 3.1300 1.4423 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.7082 1.1608 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6765 -1.7489 1.2492 33 1 0.9942 0.7582 2.3563 34 1 2.3411 -1.1456 6.2491 35 1 1.5163 0.0214 8.2509 36 1 -0.1622 1.5027 9.1785 37 1 -1.0016 2.6892 8.1509 38 1 0.6404 3.7225 9.5446 39 1 -0.5038 2.8594 5.7875 40 1 0.3192 1.7134 3.7729 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597764317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:38 Heat of formation + Delta-G solvation = -91.135423 kcal Electronic energy + Delta-G solvation = -21028.258164 eV Core-core repulsion = 17806.687894 eV Total energy + Delta-G solvation = -3221.570270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31491 -39.76087 -38.15153 -37.37691 -35.13528 -33.25120 -32.40760 -31.89028 -28.09541 -27.58797 -27.33993 -26.27022 -23.66940 -23.29717 -21.36632 -20.66346 -19.17154 -18.32389 -17.83959 -17.16610 -16.77617 -16.45923 -16.32796 -16.06041 -15.74318 -14.87538 -14.79890 -14.66797 -14.57489 -14.35572 -13.99501 -13.83223 -13.41569 -13.18763 -13.10782 -12.69150 -12.63639 -12.27381 -12.22136 -12.13183 -12.10435 -11.51193 -11.34399 -10.98617 -10.92706 -10.72523 -10.41290 -10.15793 -9.99823 -9.81371 -8.03297 -6.19247 -0.26050 0.36941 1.44031 1.44994 1.51758 1.78548 2.22028 2.47933 2.77499 3.20337 3.50558 3.75225 3.78299 3.96218 4.16215 4.26567 4.36520 4.41083 4.47509 4.57262 4.65361 4.67912 4.81146 4.95148 5.01055 5.02597 5.09167 5.16719 5.24359 5.31760 5.35268 5.49845 5.53172 5.64916 5.66036 5.86119 6.12756 6.18812 6.41638 6.57504 6.84149 6.95836 7.18932 7.48444 8.95691 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038519 B = 0.003347 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.737947 B = 8364.157363 C = 8823.654142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.532 4.532 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.146 3.854 13 N -0.703 5.703 14 C 0.544 3.456 15 O -0.589 6.589 16 C -0.144 4.144 17 C -0.078 4.078 18 C -0.108 4.108 19 C -0.077 4.077 20 C 0.116 3.884 21 O -0.590 6.590 22 C -0.107 4.107 23 C -0.091 4.091 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.261 0.739 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.408 0.592 34 H 0.128 0.872 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.402 0.598 39 H 0.156 0.844 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 6.256 21.171 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.022 3.978 13 N -0.354 5.354 14 C 0.333 3.667 15 O -0.471 6.471 16 C -0.147 4.147 17 C -0.097 4.097 18 C -0.126 4.126 19 C -0.077 4.077 20 C 0.039 3.961 21 O -0.400 6.400 22 C -0.125 4.125 23 C -0.109 4.109 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.247 0.753 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.253 0.747 39 H 0.173 0.827 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.059 5.465 20.539 21.848 hybrid contribution 0.059 -0.257 -0.929 0.966 sum -5.000 5.209 19.610 20.897 Atomic orbital electron populations 1.21683 0.97001 0.98776 1.00457 1.18355 0.93348 0.93017 0.90138 1.21685 0.97973 0.97846 1.00437 1.21242 1.31939 1.12288 0.91565 0.93701 1.25445 0.95081 0.95580 1.00942 1.69891 1.36847 1.23241 1.23747 0.85810 0.78612 0.78817 0.79526 1.20255 1.20692 1.20297 1.21354 0.97163 0.95226 0.84022 1.46065 1.52386 1.31797 1.05180 1.18853 0.79819 0.83735 0.84279 1.90702 1.40521 1.28373 1.87547 1.19989 1.03003 0.98678 0.93035 1.21342 0.97802 0.99407 0.91167 1.21276 0.96876 0.95502 0.98940 1.20273 0.96832 0.95070 0.95554 1.21094 0.91542 0.90411 0.93093 1.86520 1.49152 1.52399 1.51927 1.21318 1.00047 1.00078 0.91009 1.21528 0.95376 0.93511 1.00528 0.94529 0.91637 0.96230 0.96319 0.91626 0.94577 0.92934 0.94173 0.94057 0.75348 0.85428 0.82991 0.90558 0.90398 0.74746 0.82657 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 4 C -0.53 -28.46 8.01 25.60 0.21 -28.26 16 5 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.56 5.15 84.66 0.44 2.00 16 7 N -0.90 -47.99 9.35 21.45 0.20 -47.79 16 8 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.44 4.50 86.38 0.39 6.83 16 13 N -0.70 -25.96 4.91 -465.97 -2.29 -28.24 16 14 C 0.54 20.45 7.77 86.79 0.67 21.13 16 15 O -0.59 -26.48 16.35 -3.89 -0.06 -26.55 16 16 C -0.14 -4.27 5.87 -20.09 -0.12 -4.39 16 17 C -0.08 -2.08 9.60 22.53 0.22 -1.86 16 18 C -0.11 -2.18 9.68 22.23 0.22 -1.96 16 19 C -0.08 -1.39 5.52 -19.81 -0.11 -1.50 16 20 C 0.12 1.29 7.16 71.24 0.51 1.80 16 21 O -0.59 -7.92 13.64 -148.98 -2.03 -9.95 16 22 C -0.11 -2.02 9.68 22.23 0.22 -1.81 16 23 C -0.09 -2.14 9.54 22.53 0.21 -1.93 16 24 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 25 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 3.26 6.07 -2.38 -0.01 3.24 16 29 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 30 H 0.26 13.44 8.31 -92.71 -0.77 12.66 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.41 13.05 4.20 -92.70 -0.39 12.66 16 34 H 0.13 3.53 7.65 -2.91 -0.02 3.51 16 35 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 37 H 0.08 0.56 8.08 -2.38 -0.02 0.54 16 38 H 0.40 1.24 9.12 -74.06 -0.68 0.56 16 39 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.14 2.91 6.41 -2.91 -0.02 2.89 16 Total: -1.00 -67.43 328.39 1.83 -65.60 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.00 Total: 19.37 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 3.99 Total: -17.28 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.09 Total: -76.04 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -2.10 Total: -36.50 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.43 1.83 -65.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597764317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.535 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds