Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00221 * 2 1 4 4 C 1.53007 * 109.46754 * 60.00405 * 3 2 1 5 5 C 1.52991 * 109.47310 * 300.00681 * 3 2 1 6 6 C 1.52995 * 109.46970 * 180.02562 * 3 2 1 7 7 N 1.46494 * 109.47394 * 65.00380 * 6 3 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 3 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39228 * 120.28351 * 356.69605 * 10 8 7 12 12 C 1.38221 * 120.09201 * 180.27756 * 11 10 8 13 13 C 1.38823 * 120.67851 * 359.70494 * 12 11 10 14 14 C 1.37599 * 120.56664 * 359.97438 * 13 12 11 15 15 C 1.40702 * 119.88265 * 0.02646 * 14 13 12 16 16 C 1.40897 * 120.32846 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99803 * 145.79157 * 16 15 14 18 18 C 1.40271 * 120.00033 * 325.80567 * 16 15 14 19 19 N 1.30627 * 120.00020 * 340.74697 * 18 16 15 20 20 Si 1.86798 * 119.99977 * 160.74828 * 18 16 15 21 21 H 1.48496 * 109.47395 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.47435 * 299.99860 * 20 18 16 23 23 H 1.48501 * 109.47419 * 59.99597 * 20 18 16 24 24 H 1.09004 * 109.46478 * 299.99553 * 1 2 3 25 25 H 1.08997 * 109.47369 * 59.99447 * 1 2 3 26 26 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46968 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47035 * 299.99891 * 4 3 2 29 29 H 1.08998 * 109.46802 * 60.00019 * 4 3 2 30 30 H 1.09006 * 109.47472 * 299.99801 * 5 3 2 31 31 H 1.08997 * 109.47779 * 59.99902 * 5 3 2 32 32 H 1.09005 * 109.47324 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.47250 * 305.00238 * 6 3 2 34 34 H 1.09005 * 109.47069 * 185.00414 * 6 3 2 35 35 H 0.96994 * 119.99831 * 359.97438 * 7 6 3 36 36 H 1.08002 * 119.95273 * 0.02562 * 11 10 8 37 37 H 1.08003 * 119.65934 * 179.71811 * 12 11 10 38 38 H 1.08002 * 119.72079 * 180.02562 * 13 12 11 39 39 H 1.08009 * 120.05652 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00078 * 354.83235 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5589 2.0646 1.2494 5 6 1.5588 2.0648 -1.2491 6 6 3.5355 1.1845 -0.0006 7 7 3.9757 0.5644 -1.2527 8 6 5.2884 0.3565 -1.4767 9 8 6.1073 0.6832 -0.6392 10 6 5.7314 -0.2672 -2.7370 11 6 4.7958 -0.7061 -3.6700 12 6 5.2155 -1.2954 -4.8478 13 6 6.5680 -1.4518 -5.1189 14 6 7.5162 -1.0221 -4.2191 15 6 7.1155 -0.4190 -3.0128 16 6 8.0785 0.0240 -2.0845 17 1 7.8909 0.9070 -1.4916 18 6 9.2811 -0.6816 -1.9308 19 7 9.3691 -1.9190 -2.3399 20 14 10.7565 0.1483 -1.1410 21 1 11.8948 -0.8043 -1.0957 22 1 11.1398 1.3407 -1.9390 23 1 10.4078 0.5683 0.2400 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 2.0026 3.0602 1.2496 28 1 0.4724 2.1507 1.2494 29 1 1.8806 1.5236 2.1393 30 1 1.8803 1.5239 -2.1392 31 1 0.4722 2.1509 -1.2491 32 1 2.0018 3.0607 -1.2488 33 1 3.8515 0.5680 0.8409 34 1 3.9786 2.1764 0.0890 35 1 3.3225 0.3034 -1.9205 36 1 3.7406 -0.5896 -3.4714 37 1 4.4837 -1.6374 -5.5646 38 1 6.8787 -1.9140 -6.0442 39 1 8.5663 -1.1476 -4.4386 40 1 8.5834 -2.3742 -2.6809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601253666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -71.984089 kcal Electronic energy + Delta-G solvation = -21744.640733 eV Core-core repulsion = 18523.900927 eV Total energy + Delta-G solvation = -3220.739806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58616 -38.54183 -36.85647 -34.46384 -33.82933 -32.06689 -29.97293 -29.30952 -27.68471 -27.37828 -25.80294 -24.78834 -22.16830 -20.89571 -20.08725 -19.39409 -18.08701 -16.85456 -16.35426 -15.60397 -15.23654 -14.90253 -14.59953 -14.24102 -14.03786 -13.96333 -13.64934 -13.19875 -13.08087 -12.67062 -12.51740 -12.21340 -12.15181 -12.06663 -11.65652 -11.60285 -11.42924 -11.09224 -10.86948 -10.71031 -10.60528 -10.33629 -10.12046 -9.71262 -9.56711 -9.03588 -8.46147 -8.31040 -7.74552 -7.56251 -7.10291 -4.41777 2.29063 2.77742 3.23075 3.34104 3.43760 3.62386 3.97414 4.07807 4.13322 4.60384 4.68723 4.78624 4.85934 5.15505 5.19725 5.36105 5.40924 5.50111 5.56424 5.59044 5.68484 5.88138 5.89455 5.91831 5.98671 6.05008 6.15072 6.25151 6.55476 6.75866 7.03095 7.09721 7.19849 7.32321 7.53777 7.65351 7.76360 7.93088 8.13940 8.25655 8.44332 8.77865 8.90452 9.42259 10.08423 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.005065 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.740173 B = 5526.739982 C = 6557.950421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.099 3.901 4 C -0.175 4.175 5 C -0.178 4.178 6 C 0.142 3.858 7 N -0.742 5.742 8 C 0.563 3.437 9 O -0.540 6.540 10 C -0.263 4.263 11 C -0.043 4.043 12 C -0.260 4.260 13 C -0.076 4.076 14 C -0.202 4.202 15 C 0.121 3.879 16 C -0.467 4.467 17 H 0.105 0.895 18 C 0.031 3.969 19 N -0.794 5.794 20 Si 1.071 2.929 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.273 1.273 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.393 0.607 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 5.593 2.790 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.059 3.941 4 C -0.233 4.233 5 C -0.236 4.236 6 C 0.017 3.983 7 N -0.398 5.398 8 C 0.357 3.643 9 O -0.418 6.418 10 C -0.268 4.268 11 C -0.062 4.062 12 C -0.279 4.279 13 C -0.095 4.095 14 C -0.221 4.221 15 C 0.116 3.884 16 C -0.494 4.494 17 H 0.123 0.877 18 C -0.190 4.190 19 N -0.418 5.418 20 Si 0.894 3.106 21 H -0.200 1.200 22 H -0.200 1.200 23 H -0.198 1.198 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.229 0.771 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.537 5.384 3.801 13.287 hybrid contribution -2.447 0.160 -0.850 2.595 sum -13.984 5.544 2.951 15.329 Atomic orbital electron populations 1.22788 0.81876 1.02574 0.99970 1.88070 1.19188 1.26957 1.94969 1.21794 0.93734 0.83696 0.94837 1.22343 1.01728 1.01149 0.98064 1.22414 1.01463 1.01344 0.98361 1.21100 0.89558 0.98862 0.88753 1.45952 1.08262 1.65772 1.19808 1.18369 0.80676 0.78002 0.87261 1.90671 1.52045 1.51876 1.47252 1.19403 0.94161 1.17215 0.96058 1.20722 0.96290 0.95559 0.93603 1.20233 0.95024 1.13053 0.99638 1.20735 0.93403 0.97794 0.97528 1.21244 0.98128 1.07667 0.95034 1.17502 0.90676 0.88497 0.91679 1.21168 0.99348 1.11542 1.17321 0.87728 1.27260 1.01949 0.95096 0.94740 1.70382 1.35608 1.10235 1.25547 0.83555 0.74022 0.75877 0.77140 1.19973 1.19990 1.19819 0.93948 0.93866 0.89820 0.91087 0.91917 0.91360 0.91426 0.92134 0.91072 0.91401 0.90770 0.77090 0.89184 0.88949 0.88919 0.87556 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.21 101.05 1.03 1.26 16 2 O -0.37 -4.95 10.29 -35.23 -0.36 -5.32 16 3 C 0.10 1.20 0.80 -90.62 -0.07 1.13 16 4 C -0.18 -1.69 8.25 37.16 0.31 -1.38 16 5 C -0.18 -1.90 8.02 37.15 0.30 -1.60 16 6 C 0.14 2.25 4.84 -4.05 -0.02 2.23 16 7 N -0.74 -13.87 5.14 -61.38 -0.32 -14.18 16 8 C 0.56 13.47 7.73 -12.52 -0.10 13.38 16 9 O -0.54 -14.61 13.56 5.27 0.07 -14.54 16 10 C -0.26 -6.58 5.92 -104.37 -0.62 -7.20 16 11 C -0.04 -0.93 9.53 -39.22 -0.37 -1.31 16 12 C -0.26 -5.58 10.03 -39.37 -0.39 -5.97 16 13 C -0.08 -1.70 10.01 -39.60 -0.40 -2.10 16 14 C -0.20 -5.11 7.87 -38.88 -0.31 -5.41 16 15 C 0.12 3.28 5.17 -106.54 -0.55 2.73 16 16 C -0.47 -13.06 7.65 -37.81 -0.29 -13.35 16 17 H 0.10 3.05 5.93 -52.49 -0.31 2.74 16 18 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 19 N -0.79 -21.64 12.57 55.56 0.70 -20.95 16 20 Si 1.07 22.87 29.98 -169.99 -5.10 17.77 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H 0.04 0.34 6.42 -51.93 -0.33 0.01 16 25 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.79 6.57 -51.93 -0.34 0.44 16 31 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.39 6.63 5.03 -40.82 -0.21 6.43 16 36 H 0.09 1.66 6.41 -52.49 -0.34 1.32 16 37 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 2.74 6.94 -52.48 -0.36 2.37 16 40 H 0.30 8.33 6.55 -40.82 -0.27 8.06 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -30.98 322.26 -7.07 -38.05 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.35 Total: 11.16 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.57 Total: -16.86 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.38 Total: -35.13 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.29 Total: -19.86 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.10 Total: 17.77 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.98 -7.07 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601253666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.934 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds