Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00221 * 2 1 4 4 C 1.53007 * 109.46754 * 60.00405 * 3 2 1 5 5 C 1.52991 * 109.47310 * 300.00681 * 3 2 1 6 6 C 1.52995 * 109.46970 * 180.02562 * 3 2 1 7 7 N 1.46494 * 109.47394 * 65.00380 * 6 3 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 3 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39228 * 120.28351 * 356.69605 * 10 8 7 12 12 C 1.38221 * 120.09201 * 180.27756 * 11 10 8 13 13 C 1.38823 * 120.67851 * 359.70494 * 12 11 10 14 14 C 1.37599 * 120.56664 * 359.97438 * 13 12 11 15 15 C 1.40702 * 119.88265 * 0.02646 * 14 13 12 16 16 C 1.40897 * 120.32846 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99803 * 145.79157 * 16 15 14 18 18 C 1.40271 * 120.00033 * 325.80567 * 16 15 14 19 19 N 1.30627 * 120.00020 * 340.74697 * 18 16 15 20 20 Si 1.86798 * 119.99977 * 160.74828 * 18 16 15 21 21 H 1.48496 * 109.47395 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.47435 * 299.99860 * 20 18 16 23 23 H 1.48501 * 109.47419 * 59.99597 * 20 18 16 24 24 H 1.09004 * 109.46478 * 299.99553 * 1 2 3 25 25 H 1.08997 * 109.47369 * 59.99447 * 1 2 3 26 26 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46968 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.47035 * 299.99891 * 4 3 2 29 29 H 1.08998 * 109.46802 * 60.00019 * 4 3 2 30 30 H 1.09006 * 109.47472 * 299.99801 * 5 3 2 31 31 H 1.08997 * 109.47779 * 59.99902 * 5 3 2 32 32 H 1.09005 * 109.47324 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.47250 * 305.00238 * 6 3 2 34 34 H 1.09005 * 109.47069 * 185.00414 * 6 3 2 35 35 H 0.96994 * 119.99831 * 359.97438 * 7 6 3 36 36 H 1.08002 * 119.95273 * 0.02562 * 11 10 8 37 37 H 1.08003 * 119.65934 * 179.71811 * 12 11 10 38 38 H 1.08002 * 119.72079 * 180.02562 * 13 12 11 39 39 H 1.08009 * 120.05652 * 180.02562 * 14 13 12 40 40 H 0.97000 * 120.00078 * 354.83235 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5589 2.0646 1.2494 5 6 1.5588 2.0648 -1.2491 6 6 3.5355 1.1845 -0.0006 7 7 3.9757 0.5644 -1.2527 8 6 5.2884 0.3565 -1.4767 9 8 6.1073 0.6832 -0.6392 10 6 5.7314 -0.2672 -2.7370 11 6 4.7958 -0.7061 -3.6700 12 6 5.2155 -1.2954 -4.8478 13 6 6.5680 -1.4518 -5.1189 14 6 7.5162 -1.0221 -4.2191 15 6 7.1155 -0.4190 -3.0128 16 6 8.0785 0.0240 -2.0845 17 1 7.8909 0.9070 -1.4916 18 6 9.2811 -0.6816 -1.9308 19 7 9.3691 -1.9190 -2.3399 20 14 10.7565 0.1483 -1.1410 21 1 11.8948 -0.8043 -1.0957 22 1 11.1398 1.3407 -1.9390 23 1 10.4078 0.5683 0.2400 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 2.0026 3.0602 1.2496 28 1 0.4724 2.1507 1.2494 29 1 1.8806 1.5236 2.1393 30 1 1.8803 1.5239 -2.1392 31 1 0.4722 2.1509 -1.2491 32 1 2.0018 3.0607 -1.2488 33 1 3.8515 0.5680 0.8409 34 1 3.9786 2.1764 0.0890 35 1 3.3225 0.3034 -1.9205 36 1 3.7406 -0.5896 -3.4714 37 1 4.4837 -1.6374 -5.5646 38 1 6.8787 -1.9140 -6.0442 39 1 8.5663 -1.1476 -4.4386 40 1 8.5834 -2.3742 -2.6809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601253666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -92.151093 kcal Electronic energy + Delta-G solvation = -21745.515240 eV Core-core repulsion = 18523.900927 eV Total energy + Delta-G solvation = -3221.614313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02405 -39.95082 -38.66201 -36.08324 -35.53571 -33.36220 -31.77164 -31.16459 -28.56562 -28.28611 -27.31406 -26.38553 -23.94257 -22.75417 -21.28027 -20.98815 -19.95292 -18.35760 -17.55058 -16.96797 -16.59642 -16.22243 -16.06811 -15.94913 -15.68197 -15.52978 -15.28035 -14.45751 -14.27869 -14.18899 -13.93895 -13.65892 -13.49617 -13.20567 -12.91802 -12.87556 -12.69702 -12.51493 -12.48094 -12.26990 -12.01619 -11.94703 -11.58250 -11.40840 -10.95803 -10.57154 -10.35406 -10.00294 -9.60850 -9.49586 -9.10068 -6.45986 0.40025 0.90527 1.46843 1.62498 1.77391 2.24789 2.31801 2.42112 2.73245 2.77309 3.56169 3.63045 3.86017 3.94919 4.20721 4.26671 4.43632 4.45577 4.51858 4.55377 4.62457 4.66107 4.70958 4.80774 4.85847 4.87806 4.89384 4.98077 5.13703 5.15210 5.29136 5.42635 5.57167 5.65610 5.71334 5.89192 5.96482 6.20340 6.28052 6.33383 6.68669 6.85422 6.92483 7.60080 8.04425 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.005065 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.740173 B = 5526.739982 C = 6557.950421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.403 6.403 3 C 0.105 3.895 4 C -0.172 4.172 5 C -0.176 4.176 6 C 0.136 3.864 7 N -0.721 5.721 8 C 0.556 3.444 9 O -0.581 6.581 10 C -0.283 4.283 11 C -0.042 4.042 12 C -0.244 4.244 13 C -0.071 4.071 14 C -0.225 4.225 15 C 0.096 3.904 16 C -0.511 4.511 17 H 0.081 0.919 18 C -0.003 4.003 19 N -0.817 5.817 20 Si 1.117 2.883 21 H -0.264 1.264 22 H -0.258 1.258 23 H -0.272 1.272 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.405 0.595 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.742 6.023 1.775 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.323 6.323 3 C 0.066 3.934 4 C -0.229 4.229 5 C -0.234 4.234 6 C 0.012 3.988 7 N -0.376 5.376 8 C 0.349 3.651 9 O -0.463 6.463 10 C -0.288 4.288 11 C -0.061 4.061 12 C -0.263 4.263 13 C -0.090 4.090 14 C -0.244 4.244 15 C 0.092 3.908 16 C -0.539 4.539 17 H 0.099 0.901 18 C -0.218 4.218 19 N -0.441 5.441 20 Si 0.934 3.066 21 H -0.188 1.188 22 H -0.182 1.182 23 H -0.197 1.197 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.242 0.758 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.492 5.815 2.762 15.857 hybrid contribution -1.863 -0.008 -0.635 1.969 sum -16.355 5.807 2.127 17.485 Atomic orbital electron populations 1.23003 0.79764 1.03597 1.01390 1.88016 1.21518 1.27501 1.95288 1.21704 0.90667 0.84087 0.96974 1.22327 1.03232 1.01042 0.96321 1.22406 1.03158 1.01030 0.96783 1.21302 0.92975 0.97991 0.86504 1.45731 1.06574 1.64344 1.20904 1.18460 0.82062 0.77835 0.86767 1.90648 1.53632 1.53650 1.48354 1.19808 0.94286 1.17343 0.97389 1.21117 0.97709 0.94341 0.92938 1.20800 0.95330 1.10390 0.99733 1.21158 0.93604 0.96328 0.97895 1.21213 0.98228 1.09422 0.95548 1.17899 0.91848 0.88892 0.92170 1.21109 1.01411 1.12279 1.19085 0.90125 1.28499 1.04111 0.94878 0.94332 1.70497 1.34654 1.10714 1.28257 0.83016 0.71394 0.75734 0.76467 1.18808 1.18224 1.19739 0.92423 0.92445 0.89167 0.90142 0.89585 0.92106 0.92475 0.89598 0.90596 0.93538 0.90719 0.75753 0.85308 0.84546 0.85612 0.89143 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.21 113.37 1.16 1.44 16 2 O -0.40 -9.86 10.29 -148.98 -1.53 -11.40 16 3 C 0.11 2.35 0.80 -10.80 -0.01 2.34 16 4 C -0.17 -2.90 8.25 71.98 0.59 -2.30 16 5 C -0.18 -3.22 8.02 71.98 0.58 -2.64 16 6 C 0.14 4.31 4.84 86.38 0.42 4.73 16 7 N -0.72 -26.63 5.14 -466.37 -2.40 -29.02 16 8 C 0.56 27.21 7.73 86.67 0.67 27.88 16 9 O -0.58 -33.07 13.56 -4.06 -0.06 -33.12 16 10 C -0.28 -14.27 5.92 -19.70 -0.12 -14.39 16 11 C -0.04 -1.74 9.53 22.50 0.21 -1.53 16 12 C -0.24 -9.51 10.03 22.41 0.22 -9.28 16 13 C -0.07 -3.06 10.01 22.26 0.22 -2.84 16 14 C -0.22 -11.61 7.87 22.72 0.18 -11.43 16 15 C 0.10 5.39 5.17 -21.11 -0.11 5.28 16 16 C -0.51 -30.27 7.65 23.42 0.18 -30.09 16 17 H 0.08 5.04 5.93 -2.91 -0.02 5.03 16 18 C 0.00 -0.17 5.04 85.37 0.43 0.26 16 19 N -0.82 -46.66 12.57 21.88 0.28 -46.38 16 20 Si 1.12 48.01 29.98 68.60 2.06 50.07 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H 0.06 0.72 6.42 -2.39 -0.02 0.71 16 25 H 0.06 0.73 6.42 -2.39 -0.02 0.72 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.07 6.54 -2.39 -0.02 1.05 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.16 6.57 -2.38 -0.02 1.14 16 31 H 0.09 1.15 6.54 -2.39 -0.02 1.13 16 32 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.40 12.90 5.03 -92.71 -0.47 12.43 16 36 H 0.13 4.22 6.41 -2.91 -0.02 4.20 16 37 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.09 4.87 6.94 -2.91 -0.02 4.85 16 40 H 0.28 16.62 6.55 -92.71 -0.61 16.01 16 Total: -1.00 -71.74 322.26 3.73 -68.01 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.75 Total: 34.42 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 4.63 Total: -32.57 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -2.12 Total: -75.40 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.59 Total: -44.52 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.06 Total: 50.07 kcal Total: -71.74 3.73 -68.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601253666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.141 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds