Wall clock time and date at job start Mon Mar 30 2020 01:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47329 * 2 1 4 4 C 1.53003 * 109.47040 * 59.99855 * 3 2 1 5 5 O 1.42905 * 109.47098 * 300.00167 * 3 2 1 6 6 C 1.52991 * 109.47450 * 179.97438 * 3 2 1 7 7 N 1.46504 * 109.47284 * 184.99725 * 6 3 2 8 8 C 1.34780 * 119.99817 * 180.02562 * 7 6 3 9 9 O 1.21607 * 120.00278 * 359.97438 * 8 7 6 10 10 C 1.47436 * 119.99696 * 180.02562 * 8 7 6 11 11 C 1.39222 * 120.28141 * 5.53775 * 10 8 7 12 12 C 1.38226 * 120.09288 * 179.97438 * 11 10 8 13 13 C 1.38823 * 120.67323 * 0.02562 * 12 11 10 14 14 C 1.37601 * 120.56977 * 359.97438 * 13 12 11 15 15 C 1.40697 * 119.88445 * 0.02562 * 14 13 12 16 16 C 1.40893 * 120.33141 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00136 * 213.39565 * 16 15 14 18 18 C 1.40279 * 119.99632 * 33.40168 * 16 15 14 19 19 N 1.30622 * 119.99782 * 8.70708 * 18 16 15 20 20 Si 1.86795 * 119.99676 * 188.70956 * 18 16 15 21 21 H 1.48498 * 109.47192 * 59.99885 * 20 18 16 22 22 H 1.48502 * 109.47004 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47069 * 299.99670 * 20 18 16 24 24 H 1.08997 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46955 * 299.99653 * 1 2 3 26 26 H 1.08996 * 109.46945 * 59.99775 * 1 2 3 27 27 H 1.08997 * 109.47075 * 239.99950 * 2 1 3 28 28 H 1.08999 * 109.47603 * 119.99895 * 2 1 3 29 29 H 1.08997 * 109.47216 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47119 * 300.00334 * 4 3 2 31 31 H 1.08996 * 109.46949 * 59.99949 * 4 3 2 32 32 H 0.96702 * 113.99802 * 299.99869 * 5 3 2 33 33 H 1.09006 * 109.47285 * 65.00167 * 6 3 2 34 34 H 1.08997 * 109.47438 * 305.00307 * 6 3 2 35 35 H 0.97001 * 119.99988 * 0.02562 * 7 6 3 36 36 H 1.07998 * 119.95790 * 0.26344 * 11 10 8 37 37 H 1.07995 * 119.66195 * 180.02562 * 12 11 10 38 38 H 1.07995 * 119.71828 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.05402 * 180.02562 * 14 13 12 40 40 H 0.97013 * 119.99771 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 8 1.5637 2.1162 -1.1668 6 6 3.5700 1.4426 0.0006 7 7 4.0583 2.8186 0.1210 8 6 5.3834 3.0639 0.1424 9 8 6.1737 2.1431 0.0624 10 6 5.8748 4.4486 0.2641 11 6 4.9805 5.4951 0.4726 12 6 5.4455 6.7918 0.5866 13 6 6.8029 7.0680 0.4949 14 6 7.7109 6.0548 0.2891 15 6 7.2636 4.7262 0.1696 16 6 8.1851 3.6815 -0.0418 17 1 7.9050 2.8272 -0.6400 18 6 9.4664 3.7512 0.5250 19 7 9.7503 4.6937 1.3837 20 14 10.7665 2.4962 0.0517 21 1 11.0164 2.5697 -1.4103 22 1 12.0253 2.7873 0.7838 23 1 10.2915 1.1342 0.4048 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8930 3.1915 1.2491 30 1 0.4400 2.1638 1.2493 31 1 1.8933 1.6499 2.1392 32 1 1.8490 1.7127 -1.9980 33 1 3.9338 1.0081 -0.9306 34 1 3.9330 0.8532 0.8426 35 1 3.4279 3.5530 0.1852 36 1 3.9225 5.2930 0.5500 37 1 4.7457 7.5982 0.7487 38 1 7.1493 8.0869 0.5858 39 1 8.7651 6.2791 0.2195 40 1 10.6365 4.7421 1.7754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601260425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:22 Heat of formation + Delta-G solvation = -80.272309 kcal Electronic energy + Delta-G solvation = -21607.641619 eV Core-core repulsion = 18386.542409 eV Total energy + Delta-G solvation = -3221.099210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.42776 -38.24412 -36.61276 -33.99198 -33.52008 -33.04640 -30.20646 -29.73234 -29.03411 -26.83747 -25.34350 -23.54436 -21.84496 -20.78108 -20.29789 -19.30762 -17.60802 -16.72951 -16.21706 -15.56744 -15.26604 -14.88420 -14.72795 -14.33264 -14.12423 -13.62886 -13.42969 -13.06175 -12.68166 -12.49921 -12.32169 -12.18378 -12.11650 -12.04284 -11.68241 -11.49317 -11.10703 -11.09142 -10.94288 -10.67753 -10.59649 -10.51474 -10.06100 -9.97760 -9.64018 -9.24318 -8.40083 -8.30049 -7.55296 -7.33375 -6.77265 -4.36421 2.39573 2.84927 3.10111 3.16128 3.27111 3.86277 3.99054 4.19307 4.28709 4.64511 4.71080 4.74715 4.80188 5.17089 5.33319 5.45692 5.64595 5.70234 5.75416 5.79494 5.82789 5.89386 5.96387 6.03400 6.12148 6.20586 6.25766 6.33745 6.65408 6.99035 7.11338 7.19399 7.26308 7.49597 7.60648 7.66195 7.92510 8.01396 8.21012 8.43074 8.69013 8.85255 8.92704 9.44646 10.17507 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.004921 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.121618 B = 5688.572224 C = 6820.697572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.120 3.880 4 C -0.141 4.141 5 O -0.555 6.555 6 C 0.101 3.899 7 N -0.742 5.742 8 C 0.563 3.437 9 O -0.541 6.541 10 C -0.262 4.262 11 C -0.056 4.056 12 C -0.246 4.246 13 C -0.096 4.096 14 C -0.149 4.149 15 C 0.146 3.854 16 C -0.417 4.417 17 H 0.105 0.895 18 C 0.069 3.931 19 N -0.794 5.794 20 Si 0.917 3.083 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.262 1.262 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.376 0.624 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 -5.303 -1.641 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.079 3.921 4 C -0.198 4.198 5 O -0.361 6.361 6 C -0.024 4.024 7 N -0.398 5.398 8 C 0.357 3.643 9 O -0.420 6.420 10 C -0.267 4.267 11 C -0.075 4.075 12 C -0.266 4.266 13 C -0.114 4.114 14 C -0.168 4.168 15 C 0.141 3.859 16 C -0.445 4.445 17 H 0.122 0.878 18 C -0.149 4.149 19 N -0.419 5.419 20 Si 0.742 3.258 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.187 1.187 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.223 0.777 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.827 -5.519 -1.087 13.097 hybrid contribution 0.559 -0.497 -0.345 0.823 sum -11.268 -6.015 -1.432 12.853 Atomic orbital electron populations 1.21728 0.94989 1.01213 1.02587 1.22130 0.97149 0.96231 1.03025 1.21474 0.91693 0.91828 0.87092 1.21789 1.01708 1.01211 0.95106 1.86537 1.76702 1.57222 1.15597 1.21785 0.92717 0.85800 1.02063 1.45972 1.07799 1.07424 1.78617 1.18451 0.80582 0.89808 0.75424 1.90665 1.54534 1.46498 1.50314 1.19453 0.95023 0.90541 1.21691 1.20650 0.96262 0.93089 0.97518 1.20281 0.95107 0.95351 1.15827 1.20802 0.93477 0.97530 0.99639 1.21380 0.98919 0.91970 1.04570 1.17474 0.89867 0.92631 0.85892 1.20163 0.94565 1.04781 1.24974 0.87751 1.26126 0.99282 0.96105 0.93387 1.69713 1.22226 1.29666 1.20303 0.86205 0.78482 0.81423 0.79711 1.18786 1.20468 1.18663 0.93028 0.92394 0.92078 0.91497 0.90826 0.91669 0.91540 0.90998 0.77681 0.92122 0.91504 0.76878 0.89322 0.89131 0.89111 0.86332 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.41 37.16 0.35 -0.89 16 2 C -0.15 -1.37 5.17 -26.73 -0.14 -1.50 16 3 C 0.12 1.37 0.75 -90.62 -0.07 1.30 16 4 C -0.14 -1.58 8.26 37.16 0.31 -1.27 16 5 O -0.55 -6.44 12.25 -35.23 -0.43 -6.87 16 6 C 0.10 1.51 4.82 -4.04 -0.02 1.49 16 7 N -0.74 -13.42 5.14 -61.38 -0.32 -13.74 16 8 C 0.56 13.25 7.72 -12.51 -0.10 13.15 16 9 O -0.54 -14.40 13.57 5.27 0.07 -14.33 16 10 C -0.26 -6.53 5.92 -104.37 -0.62 -7.15 16 11 C -0.06 -1.23 9.52 -39.22 -0.37 -1.61 16 12 C -0.25 -5.35 10.03 -39.37 -0.39 -5.74 16 13 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 14 C -0.15 -3.84 8.62 -38.89 -0.34 -4.18 16 15 C 0.15 3.96 5.52 -106.54 -0.59 3.37 16 16 C -0.42 -11.59 7.71 -37.81 -0.29 -11.88 16 17 H 0.10 3.00 5.87 -52.49 -0.31 2.69 16 18 C 0.07 1.80 5.27 -17.30 -0.09 1.70 16 19 N -0.79 -20.77 11.06 55.56 0.61 -20.15 16 20 Si 0.92 19.82 29.57 -169.99 -5.03 14.79 16 21 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 26 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.80 6.57 -51.93 -0.34 0.45 16 30 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.38 3.34 9.05 45.56 0.41 3.76 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.40 6.55 5.05 -40.82 -0.21 6.34 16 36 H 0.09 1.64 6.44 -52.49 -0.34 1.30 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 3.11 6.51 -52.49 -0.34 2.77 16 40 H 0.28 6.72 8.29 -40.81 -0.34 6.38 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -30.62 324.94 -7.65 -38.28 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -4.71 Total: 12.91 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.76 Total: -15.79 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.30 Total: -33.89 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.36 Total: -21.20 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.62 -7.65 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601260425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.997 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds