Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47329 * 2 1 4 4 C 1.53003 * 109.47040 * 59.99855 * 3 2 1 5 5 O 1.42905 * 109.47098 * 300.00167 * 3 2 1 6 6 C 1.52991 * 109.47450 * 179.97438 * 3 2 1 7 7 N 1.46504 * 109.47284 * 184.99725 * 6 3 2 8 8 C 1.34780 * 119.99817 * 180.02562 * 7 6 3 9 9 O 1.21607 * 120.00278 * 359.97438 * 8 7 6 10 10 C 1.47436 * 119.99696 * 180.02562 * 8 7 6 11 11 C 1.39222 * 120.28141 * 5.53775 * 10 8 7 12 12 C 1.38226 * 120.09288 * 179.97438 * 11 10 8 13 13 C 1.38823 * 120.67323 * 0.02562 * 12 11 10 14 14 C 1.37601 * 120.56977 * 359.97438 * 13 12 11 15 15 C 1.40697 * 119.88445 * 0.02562 * 14 13 12 16 16 C 1.40893 * 120.33141 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00136 * 213.39565 * 16 15 14 18 18 C 1.40279 * 119.99632 * 33.40168 * 16 15 14 19 19 N 1.30622 * 119.99782 * 8.70708 * 18 16 15 20 20 Si 1.86795 * 119.99676 * 188.70956 * 18 16 15 21 21 H 1.48498 * 109.47192 * 59.99885 * 20 18 16 22 22 H 1.48502 * 109.47004 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47069 * 299.99670 * 20 18 16 24 24 H 1.08997 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46955 * 299.99653 * 1 2 3 26 26 H 1.08996 * 109.46945 * 59.99775 * 1 2 3 27 27 H 1.08997 * 109.47075 * 239.99950 * 2 1 3 28 28 H 1.08999 * 109.47603 * 119.99895 * 2 1 3 29 29 H 1.08997 * 109.47216 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47119 * 300.00334 * 4 3 2 31 31 H 1.08996 * 109.46949 * 59.99949 * 4 3 2 32 32 H 0.96702 * 113.99802 * 299.99869 * 5 3 2 33 33 H 1.09006 * 109.47285 * 65.00167 * 6 3 2 34 34 H 1.08997 * 109.47438 * 305.00307 * 6 3 2 35 35 H 0.97001 * 119.99988 * 0.02562 * 7 6 3 36 36 H 1.07998 * 119.95790 * 0.26344 * 11 10 8 37 37 H 1.07995 * 119.66195 * 180.02562 * 12 11 10 38 38 H 1.07995 * 119.71828 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.05402 * 180.02562 * 14 13 12 40 40 H 0.97013 * 119.99771 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 8 1.5637 2.1162 -1.1668 6 6 3.5700 1.4426 0.0006 7 7 4.0583 2.8186 0.1210 8 6 5.3834 3.0639 0.1424 9 8 6.1737 2.1431 0.0624 10 6 5.8748 4.4486 0.2641 11 6 4.9805 5.4951 0.4726 12 6 5.4455 6.7918 0.5866 13 6 6.8029 7.0680 0.4949 14 6 7.7109 6.0548 0.2891 15 6 7.2636 4.7262 0.1696 16 6 8.1851 3.6815 -0.0418 17 1 7.9050 2.8272 -0.6400 18 6 9.4664 3.7512 0.5250 19 7 9.7503 4.6937 1.3837 20 14 10.7665 2.4962 0.0517 21 1 11.0164 2.5697 -1.4103 22 1 12.0253 2.7873 0.7838 23 1 10.2915 1.1342 0.4048 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8930 3.1915 1.2491 30 1 0.4400 2.1638 1.2493 31 1 1.8933 1.6499 2.1392 32 1 1.8490 1.7127 -1.9980 33 1 3.9338 1.0081 -0.9306 34 1 3.9330 0.8532 0.8426 35 1 3.4279 3.5530 0.1852 36 1 3.9225 5.2930 0.5500 37 1 4.7457 7.5982 0.7487 38 1 7.1493 8.0869 0.5858 39 1 8.7651 6.2791 0.2195 40 1 10.6365 4.7421 1.7754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601260425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -101.192012 kcal Electronic energy + Delta-G solvation = -21608.548765 eV Core-core repulsion = 18386.542409 eV Total energy + Delta-G solvation = -3222.006357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91452 -39.59541 -38.38794 -35.75397 -35.04845 -34.04630 -31.91940 -31.49601 -30.19835 -28.07107 -27.14334 -24.73383 -23.44979 -22.58052 -21.36061 -20.89841 -19.43943 -18.28510 -17.41470 -17.11599 -16.63354 -16.36234 -16.05853 -15.82035 -15.57145 -15.20131 -14.87292 -14.57850 -14.48372 -13.90857 -13.57035 -13.35556 -13.26493 -13.03382 -12.88649 -12.84441 -12.76826 -12.61214 -12.48727 -12.30243 -11.91812 -11.82593 -11.51460 -11.44211 -11.14519 -10.91698 -10.24989 -9.94779 -9.39089 -9.23733 -8.67074 -6.36457 0.52233 1.02030 1.33119 1.44836 1.51307 2.20800 2.35296 2.45469 2.79222 3.33851 3.64343 3.72984 3.87205 3.91507 4.30261 4.36231 4.37687 4.56421 4.58093 4.66790 4.71114 4.80290 4.91938 4.95643 5.03403 5.08776 5.10833 5.14398 5.24875 5.34457 5.37620 5.48018 5.61992 5.67113 5.83081 6.05874 6.10852 6.34350 6.64242 6.78187 6.82088 6.92494 7.01221 7.66430 8.29734 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.004921 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.121618 B = 5688.572224 C = 6820.697572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C 0.132 3.868 4 C -0.144 4.144 5 O -0.563 6.563 6 C 0.097 3.903 7 N -0.721 5.721 8 C 0.558 3.442 9 O -0.581 6.581 10 C -0.283 4.283 11 C -0.054 4.054 12 C -0.237 4.237 13 C -0.092 4.092 14 C -0.178 4.178 15 C 0.115 3.885 16 C -0.458 4.458 17 H 0.082 0.918 18 C 0.031 3.969 19 N -0.822 5.822 20 Si 0.980 3.020 21 H -0.257 1.257 22 H -0.259 1.259 23 H -0.273 1.273 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.387 0.613 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.405 0.595 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 -4.957 -1.498 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.091 3.909 4 C -0.202 4.202 5 O -0.371 6.371 6 C -0.027 4.027 7 N -0.376 5.376 8 C 0.351 3.649 9 O -0.463 6.463 10 C -0.288 4.288 11 C -0.073 4.073 12 C -0.256 4.256 13 C -0.110 4.110 14 C -0.198 4.198 15 C 0.111 3.889 16 C -0.487 4.487 17 H 0.100 0.900 18 C -0.184 4.184 19 N -0.449 5.449 20 Si 0.801 3.199 21 H -0.181 1.181 22 H -0.182 1.182 23 H -0.198 1.198 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.237 0.763 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.120 0.880 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.028 -5.150 -0.952 14.974 hybrid contribution 1.011 -0.517 -0.391 1.201 sum -13.017 -5.667 -1.343 14.261 Atomic orbital electron populations 1.21703 0.93909 1.02024 1.02509 1.22107 0.97938 0.94540 1.03615 1.21377 0.88725 0.93427 0.87387 1.21844 1.02738 1.00483 0.95086 1.86514 1.76549 1.57761 1.16238 1.22045 0.95530 0.83625 1.01506 1.45745 1.06019 1.09307 1.76541 1.18469 0.82054 0.89088 0.75318 1.90641 1.56064 1.47373 1.52244 1.19852 0.95012 0.92328 1.21573 1.21031 0.97754 0.92508 0.96001 1.20791 0.95194 0.96375 1.13273 1.21182 0.93874 0.98250 0.97724 1.21336 0.98907 0.92426 1.07085 1.17859 0.91203 0.93245 0.86617 1.20137 0.96450 1.04920 1.27158 0.90013 1.26815 1.00586 0.97983 0.92975 1.69740 1.23027 1.31064 1.21043 0.85292 0.76570 0.78202 0.79820 1.18144 1.18243 1.19832 0.91834 0.92206 0.92379 0.90825 0.90475 0.92751 0.90008 0.90527 0.76338 0.92566 0.92268 0.75710 0.85538 0.85023 0.86163 0.87956 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.41 71.98 0.68 -1.35 16 2 C -0.14 -2.34 5.17 30.60 0.16 -2.19 16 3 C 0.13 2.74 0.75 -10.79 -0.01 2.74 16 4 C -0.14 -2.89 8.26 71.98 0.59 -2.29 16 5 O -0.56 -11.77 12.25 -148.98 -1.83 -13.60 16 6 C 0.10 2.83 4.82 86.38 0.42 3.25 16 7 N -0.72 -25.56 5.14 -466.36 -2.40 -27.95 16 8 C 0.56 26.66 7.72 86.67 0.67 27.33 16 9 O -0.58 -32.23 13.57 -4.05 -0.06 -32.29 16 10 C -0.28 -14.20 5.92 -19.70 -0.12 -14.31 16 11 C -0.05 -2.26 9.52 22.50 0.21 -2.05 16 12 C -0.24 -9.54 10.03 22.41 0.22 -9.31 16 13 C -0.09 -4.06 10.01 22.26 0.22 -3.84 16 14 C -0.18 -9.37 8.62 22.72 0.20 -9.17 16 15 C 0.11 6.45 5.52 -21.11 -0.12 6.33 16 16 C -0.46 -26.84 7.71 23.42 0.18 -26.66 16 17 H 0.08 5.03 5.87 -2.91 -0.02 5.01 16 18 C 0.03 1.69 5.27 85.37 0.45 2.14 16 19 N -0.82 -44.52 11.06 21.88 0.24 -44.28 16 20 Si 0.98 42.11 29.57 68.60 2.03 44.14 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.82 6.43 -2.39 -0.02 0.81 16 26 H 0.06 0.86 7.68 -2.39 -0.02 0.84 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.19 6.57 -2.39 -0.02 1.18 16 30 H 0.08 1.40 6.43 -2.39 -0.02 1.38 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.39 6.09 9.05 -74.06 -0.67 5.42 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.40 12.63 5.05 -92.71 -0.47 12.16 16 36 H 0.13 4.21 6.44 -2.91 -0.02 4.19 16 37 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.10 5.60 6.51 -2.91 -0.02 5.58 16 40 H 0.29 14.14 8.29 -92.70 -0.77 13.37 16 Total: -1.00 -69.10 324.94 1.69 -67.42 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.07 Total: 35.95 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 3.76 Total: -29.38 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -2.15 Total: -72.23 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -1.88 Total: -45.89 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -69.10 1.69 -67.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601260425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.774 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds