Wall clock time and date at job start Mon Mar 30 2020 01:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47395 * 2 1 4 4 C 1.53000 * 109.46909 * 304.99903 * 3 2 1 5 5 O 1.42904 * 109.47256 * 64.99722 * 3 2 1 6 6 C 1.53000 * 109.47268 * 185.00083 * 3 2 1 7 7 N 1.46497 * 109.47087 * 179.97438 * 6 3 2 8 8 C 1.34774 * 120.00234 * 179.97438 * 7 6 3 9 9 O 1.21618 * 119.99610 * 359.97438 * 8 7 6 10 10 C 1.47428 * 120.00477 * 180.02562 * 8 7 6 11 11 C 1.39232 * 120.28289 * 357.04276 * 10 8 7 12 12 C 1.38217 * 120.09279 * 180.28468 * 11 10 8 13 13 C 1.38824 * 120.67978 * 359.71245 * 12 11 10 14 14 C 1.37600 * 120.56626 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.88544 * 0.02562 * 14 13 12 16 16 C 1.40884 * 120.33304 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00338 * 145.83971 * 16 15 14 18 18 C 1.40273 * 119.99682 * 325.85322 * 16 15 14 19 19 N 1.30628 * 120.00064 * 340.93042 * 18 16 15 20 20 Si 1.86803 * 120.00002 * 160.93839 * 18 16 15 21 21 H 1.48499 * 109.47112 * 269.99364 * 20 18 16 22 22 H 1.48503 * 109.46959 * 29.99348 * 20 18 16 23 23 H 1.48498 * 109.47156 * 149.99451 * 20 18 16 24 24 H 1.08999 * 109.46957 * 300.00516 * 1 2 3 25 25 H 1.09001 * 109.46802 * 59.99868 * 1 2 3 26 26 H 1.08992 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47212 * 239.99897 * 2 1 3 28 28 H 1.08999 * 109.47011 * 119.99636 * 2 1 3 29 29 H 1.08997 * 109.47127 * 300.00057 * 4 3 2 30 30 H 1.09008 * 109.47216 * 60.00446 * 4 3 2 31 31 H 1.09001 * 109.47043 * 179.97438 * 4 3 2 32 32 H 0.96703 * 113.99924 * 59.99938 * 5 3 2 33 33 H 1.08997 * 109.47147 * 59.99710 * 6 3 2 34 34 H 1.09003 * 109.46728 * 299.99500 * 6 3 2 35 35 H 0.97004 * 120.00040 * 0.02562 * 7 6 3 36 36 H 1.08006 * 119.95133 * 359.97438 * 11 10 8 37 37 H 1.08006 * 119.66116 * 179.73701 * 12 11 10 38 38 H 1.07994 * 119.72012 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.05845 * 180.02562 * 14 13 12 40 40 H 0.96992 * 119.99794 * 354.76404 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4300 2.1991 -1.1817 5 8 1.6620 2.0815 1.2210 6 6 3.5649 1.4443 -0.1257 7 7 4.0532 2.8255 -0.1264 8 6 5.3741 3.0733 -0.2277 9 8 6.1607 2.1501 -0.3181 10 6 5.8656 4.4632 -0.2277 11 6 4.9668 5.5257 -0.1853 12 6 5.4317 6.8273 -0.1915 13 6 6.7937 7.0928 -0.2337 14 6 7.7064 6.0638 -0.2698 15 6 7.2594 4.7296 -0.2644 16 6 8.1856 3.6687 -0.3017 17 1 7.9751 2.7493 0.2243 18 6 9.3815 3.8068 -1.0217 19 7 9.4868 4.7271 -1.9428 20 14 10.8234 2.6745 -0.6636 21 1 11.6781 3.2793 0.3894 22 1 10.3160 1.3599 -0.1948 23 1 11.6224 2.4841 -1.9008 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7184 1.7117 -2.1130 30 1 0.3437 2.1979 -1.0921 31 1 1.7931 3.2269 -1.1814 32 1 2.0142 1.6543 2.0139 33 1 3.8532 0.9569 -1.0571 34 1 3.9995 0.9053 0.7162 35 1 3.4259 3.5617 -0.0531 36 1 3.9047 5.3326 -0.1526 37 1 4.7282 7.6463 -0.1627 38 1 7.1399 8.1158 -0.2375 39 1 8.7641 6.2797 -0.3021 40 1 8.7155 5.2643 -2.1819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601260426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:25 Heat of formation + Delta-G solvation = -86.653186 kcal Electronic energy + Delta-G solvation = -21649.957167 eV Core-core repulsion = 18428.581261 eV Total energy + Delta-G solvation = -3221.375906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.48203 -38.35349 -36.79667 -34.14423 -33.61543 -33.13764 -30.31059 -29.50903 -29.05970 -26.88715 -25.18885 -23.60110 -21.98463 -20.87857 -20.34187 -19.39592 -18.13095 -16.86927 -16.28494 -15.58858 -15.03296 -14.96120 -14.58345 -14.37661 -14.04246 -13.85593 -13.60061 -13.37193 -12.64953 -12.50533 -12.33728 -12.25267 -12.15308 -12.10847 -11.73477 -11.63661 -11.12830 -11.11146 -10.88821 -10.73125 -10.63270 -10.37019 -10.15149 -10.00987 -9.58202 -9.06991 -8.49357 -8.37009 -7.77295 -7.59225 -7.12934 -4.44968 2.25747 2.74816 3.20263 3.31607 3.42093 3.80141 4.04818 4.08273 4.26068 4.60827 4.65940 4.71661 4.76880 5.12867 5.31011 5.42925 5.47751 5.66750 5.72776 5.75576 5.79241 5.85812 5.90517 5.92831 6.08224 6.09312 6.19217 6.22768 6.52567 6.73488 7.00508 7.12079 7.29611 7.51293 7.57182 7.62553 7.74056 7.90485 8.11245 8.23111 8.40721 8.75014 8.87779 9.37948 10.05634 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.004896 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.755853 B = 5717.141360 C = 6798.773996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.120 3.880 4 C -0.141 4.141 5 O -0.555 6.555 6 C 0.101 3.899 7 N -0.741 5.741 8 C 0.562 3.438 9 O -0.540 6.540 10 C -0.265 4.265 11 C -0.043 4.043 12 C -0.259 4.259 13 C -0.075 4.075 14 C -0.202 4.202 15 C 0.121 3.879 16 C -0.468 4.468 17 H 0.105 0.895 18 C 0.031 3.969 19 N -0.795 5.795 20 Si 1.073 2.927 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.276 1.276 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.376 0.624 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.637 -5.652 2.656 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.079 3.921 4 C -0.198 4.198 5 O -0.361 6.361 6 C -0.024 4.024 7 N -0.397 5.397 8 C 0.356 3.644 9 O -0.419 6.419 10 C -0.270 4.270 11 C -0.062 4.062 12 C -0.279 4.279 13 C -0.094 4.094 14 C -0.221 4.221 15 C 0.117 3.883 16 C -0.495 4.495 17 H 0.123 0.877 18 C -0.191 4.191 19 N -0.419 5.419 20 Si 0.896 3.104 21 H -0.201 1.201 22 H -0.198 1.198 23 H -0.202 1.202 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.224 0.776 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.231 0.769 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.784 -6.214 1.711 12.563 hybrid contribution -1.720 0.437 0.758 1.929 sum -12.503 -5.777 2.469 13.993 Atomic orbital electron populations 1.21754 0.95004 1.01295 1.02563 1.22127 0.97169 0.96175 1.03019 1.21481 0.92315 0.92223 0.86052 1.21806 1.01317 1.00965 0.95756 1.86529 1.76765 1.57470 1.15335 1.21789 0.92785 0.85560 1.02255 1.45914 1.08238 1.06991 1.78589 1.18397 0.80592 0.89843 0.75551 1.90675 1.54584 1.46499 1.50136 1.19401 0.94103 0.90371 1.23114 1.20733 0.96425 0.93018 0.95983 1.20247 0.94894 0.95162 1.17554 1.20743 0.93492 0.97246 0.97949 1.21254 0.98278 0.92667 1.09892 1.17508 0.90508 0.92468 0.87838 1.21209 1.00540 1.02290 1.25413 0.87679 1.27263 1.01411 0.97661 0.92719 1.70356 1.35810 1.14327 1.21358 0.83519 0.73956 0.75697 0.77182 1.20062 1.19793 1.20161 0.92113 0.92304 0.92984 0.90816 0.91473 0.91025 0.91446 0.91731 0.77634 0.91480 0.92133 0.76899 0.89105 0.88888 0.88881 0.87533 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.32 37.16 0.35 -0.90 16 2 C -0.15 -1.35 5.20 -26.73 -0.14 -1.49 16 3 C 0.12 1.36 0.74 -90.62 -0.07 1.30 16 4 C -0.14 -1.57 8.18 37.16 0.30 -1.26 16 5 O -0.56 -6.43 12.26 -35.23 -0.43 -6.86 16 6 C 0.10 1.51 4.78 -4.04 -0.02 1.49 16 7 N -0.74 -13.37 5.10 -61.38 -0.31 -13.68 16 8 C 0.56 13.22 7.73 -12.52 -0.10 13.12 16 9 O -0.54 -14.43 13.55 5.26 0.07 -14.36 16 10 C -0.26 -6.55 5.92 -104.37 -0.62 -7.17 16 11 C -0.04 -0.92 9.53 -39.22 -0.37 -1.30 16 12 C -0.26 -5.53 10.03 -39.37 -0.39 -5.92 16 13 C -0.08 -1.69 10.01 -39.60 -0.40 -2.09 16 14 C -0.20 -5.09 7.86 -38.88 -0.31 -5.39 16 15 C 0.12 3.27 5.18 -106.54 -0.55 2.71 16 16 C -0.47 -12.99 7.66 -37.82 -0.29 -13.28 16 17 H 0.11 3.06 5.91 -52.49 -0.31 2.75 16 18 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 19 N -0.80 -21.48 12.57 55.56 0.70 -20.78 16 20 Si 1.07 22.76 29.98 -169.99 -5.10 17.66 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H 0.06 0.53 7.82 -51.93 -0.41 0.13 16 25 H 0.06 0.48 6.34 -51.93 -0.33 0.15 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.67 6.35 -51.92 -0.33 0.34 16 31 H 0.06 0.79 6.86 -51.93 -0.36 0.43 16 32 H 0.38 3.37 9.05 45.56 0.41 3.78 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 6.53 5.23 -40.82 -0.21 6.32 16 36 H 0.09 1.66 6.41 -52.48 -0.34 1.33 16 37 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.11 2.73 6.93 -52.49 -0.36 2.37 16 40 H 0.30 8.25 6.54 -40.82 -0.27 7.98 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -30.72 324.37 -7.55 -38.27 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -4.68 Total: 14.32 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.69 Total: -19.46 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.39 Total: -34.46 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.36 Total: -21.22 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.10 Total: 17.66 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.72 -7.55 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601260426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.379 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds