Wall clock time and date at job start Mon Mar 30 2020 01:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47395 * 2 1 4 4 C 1.53000 * 109.46909 * 304.99903 * 3 2 1 5 5 O 1.42904 * 109.47256 * 64.99722 * 3 2 1 6 6 C 1.53000 * 109.47268 * 185.00083 * 3 2 1 7 7 N 1.46497 * 109.47087 * 179.97438 * 6 3 2 8 8 C 1.34774 * 120.00234 * 179.97438 * 7 6 3 9 9 O 1.21618 * 119.99610 * 359.97438 * 8 7 6 10 10 C 1.47428 * 120.00477 * 180.02562 * 8 7 6 11 11 C 1.39232 * 120.28289 * 357.04276 * 10 8 7 12 12 C 1.38217 * 120.09279 * 180.28468 * 11 10 8 13 13 C 1.38824 * 120.67978 * 359.71245 * 12 11 10 14 14 C 1.37600 * 120.56626 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.88544 * 0.02562 * 14 13 12 16 16 C 1.40884 * 120.33304 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00338 * 145.83971 * 16 15 14 18 18 C 1.40273 * 119.99682 * 325.85322 * 16 15 14 19 19 N 1.30628 * 120.00064 * 340.93042 * 18 16 15 20 20 Si 1.86803 * 120.00002 * 160.93839 * 18 16 15 21 21 H 1.48499 * 109.47112 * 269.99364 * 20 18 16 22 22 H 1.48503 * 109.46959 * 29.99348 * 20 18 16 23 23 H 1.48498 * 109.47156 * 149.99451 * 20 18 16 24 24 H 1.08999 * 109.46957 * 300.00516 * 1 2 3 25 25 H 1.09001 * 109.46802 * 59.99868 * 1 2 3 26 26 H 1.08992 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47212 * 239.99897 * 2 1 3 28 28 H 1.08999 * 109.47011 * 119.99636 * 2 1 3 29 29 H 1.08997 * 109.47127 * 300.00057 * 4 3 2 30 30 H 1.09008 * 109.47216 * 60.00446 * 4 3 2 31 31 H 1.09001 * 109.47043 * 179.97438 * 4 3 2 32 32 H 0.96703 * 113.99924 * 59.99938 * 5 3 2 33 33 H 1.08997 * 109.47147 * 59.99710 * 6 3 2 34 34 H 1.09003 * 109.46728 * 299.99500 * 6 3 2 35 35 H 0.97004 * 120.00040 * 0.02562 * 7 6 3 36 36 H 1.08006 * 119.95133 * 359.97438 * 11 10 8 37 37 H 1.08006 * 119.66116 * 179.73701 * 12 11 10 38 38 H 1.07994 * 119.72012 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.05845 * 180.02562 * 14 13 12 40 40 H 0.96992 * 119.99794 * 354.76404 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4300 2.1991 -1.1817 5 8 1.6620 2.0815 1.2210 6 6 3.5649 1.4443 -0.1257 7 7 4.0532 2.8255 -0.1264 8 6 5.3741 3.0733 -0.2277 9 8 6.1607 2.1501 -0.3181 10 6 5.8656 4.4632 -0.2277 11 6 4.9668 5.5257 -0.1853 12 6 5.4317 6.8273 -0.1915 13 6 6.7937 7.0928 -0.2337 14 6 7.7064 6.0638 -0.2698 15 6 7.2594 4.7296 -0.2644 16 6 8.1856 3.6687 -0.3017 17 1 7.9751 2.7493 0.2243 18 6 9.3815 3.8068 -1.0217 19 7 9.4868 4.7271 -1.9428 20 14 10.8234 2.6745 -0.6636 21 1 11.6781 3.2793 0.3894 22 1 10.3160 1.3599 -0.1948 23 1 11.6224 2.4841 -1.9008 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7184 1.7117 -2.1130 30 1 0.3437 2.1979 -1.0921 31 1 1.7931 3.2269 -1.1814 32 1 2.0142 1.6543 2.0139 33 1 3.8532 0.9569 -1.0571 34 1 3.9995 0.9053 0.7162 35 1 3.4259 3.5617 -0.0531 36 1 3.9047 5.3326 -0.1526 37 1 4.7282 7.6463 -0.1627 38 1 7.1399 8.1158 -0.2375 39 1 8.7641 6.2797 -0.3021 40 1 8.7155 5.2643 -2.1819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601260426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:24 Heat of formation + Delta-G solvation = -107.727401 kcal Electronic energy + Delta-G solvation = -21650.871014 eV Core-core repulsion = 18428.581261 eV Total energy + Delta-G solvation = -3222.289752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00379 -39.70540 -38.55925 -35.96896 -35.08630 -34.14416 -32.01097 -31.28304 -30.22536 -28.09894 -27.00305 -24.83001 -23.55242 -22.69957 -21.43120 -20.96550 -19.99351 -18.39624 -17.48908 -16.69051 -16.62861 -16.46175 -16.11151 -15.77869 -15.63114 -15.47892 -15.16189 -14.65564 -14.40014 -13.96102 -13.80054 -13.38156 -13.31157 -13.04639 -12.94232 -12.89459 -12.69600 -12.62284 -12.49499 -12.06358 -11.96158 -11.82951 -11.50078 -11.48073 -10.98595 -10.92497 -10.35537 -10.01629 -9.61902 -9.50817 -9.10823 -6.47392 0.38732 0.89263 1.45668 1.61658 1.76604 2.23881 2.30402 2.38189 2.73568 3.31317 3.54946 3.60711 3.82476 3.89502 4.19141 4.26062 4.32879 4.42756 4.53355 4.62217 4.66505 4.77285 4.81759 4.86868 4.92450 5.00305 5.05639 5.12450 5.13082 5.34431 5.41713 5.45502 5.56647 5.64847 5.70507 5.88478 5.95738 6.19244 6.32290 6.66876 6.77025 6.84742 6.91727 7.59167 8.03670 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.004896 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.755853 B = 5717.141360 C = 6798.773996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C 0.132 3.868 4 C -0.144 4.144 5 O -0.563 6.563 6 C 0.097 3.903 7 N -0.720 5.720 8 C 0.556 3.444 9 O -0.581 6.581 10 C -0.285 4.285 11 C -0.042 4.042 12 C -0.244 4.244 13 C -0.071 4.071 14 C -0.226 4.226 15 C 0.097 3.903 16 C -0.511 4.511 17 H 0.080 0.920 18 C -0.003 4.003 19 N -0.817 5.817 20 Si 1.118 2.882 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.267 1.267 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.388 0.612 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.405 0.595 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.071 -5.057 3.117 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.091 3.909 4 C -0.202 4.202 5 O -0.371 6.371 6 C -0.027 4.027 7 N -0.374 5.374 8 C 0.349 3.651 9 O -0.463 6.463 10 C -0.289 4.289 11 C -0.061 4.061 12 C -0.263 4.263 13 C -0.090 4.090 14 C -0.245 4.245 15 C 0.093 3.907 16 C -0.539 4.539 17 H 0.098 0.902 18 C -0.218 4.218 19 N -0.442 5.442 20 Si 0.936 3.064 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.191 1.191 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.237 0.763 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.243 0.757 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.278 -5.596 2.191 14.575 hybrid contribution -1.249 0.358 0.672 1.463 sum -14.527 -5.238 2.863 15.705 Atomic orbital electron populations 1.21728 0.93895 1.02116 1.02506 1.22107 0.97986 0.94485 1.03606 1.21384 0.89309 0.93840 0.86334 1.21860 1.02303 1.00180 0.95812 1.86507 1.76698 1.58018 1.15835 1.22049 0.95620 0.83392 1.01660 1.45682 1.06425 1.08902 1.76431 1.18448 0.82072 0.89168 0.75431 1.90654 1.56138 1.47419 1.52082 1.19823 0.94133 0.92209 1.22775 1.21123 0.97941 0.92415 0.94588 1.20805 0.95072 0.96239 1.14170 1.21158 0.93811 0.98093 0.95903 1.21221 0.98267 0.93022 1.11984 1.17898 0.91740 0.93171 0.87934 1.21131 1.02657 1.02080 1.28034 0.90182 1.28482 1.03398 0.98260 0.91637 1.70467 1.34985 1.15955 1.22747 0.82980 0.71589 0.73957 0.77881 1.17930 1.19997 1.19131 0.92429 0.92051 0.91795 0.90525 0.90752 0.90534 0.89888 0.92877 0.76319 0.92338 0.92577 0.75701 0.85271 0.84604 0.85643 0.89147 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.32 71.98 0.67 -1.34 16 2 C -0.14 -2.32 5.20 30.60 0.16 -2.16 16 3 C 0.13 2.73 0.74 -10.79 -0.01 2.72 16 4 C -0.14 -2.86 8.18 71.98 0.59 -2.27 16 5 O -0.56 -11.63 12.26 -148.98 -1.83 -13.46 16 6 C 0.10 2.82 4.78 86.38 0.41 3.23 16 7 N -0.72 -25.35 5.10 -466.37 -2.38 -27.72 16 8 C 0.56 26.53 7.73 86.66 0.67 27.20 16 9 O -0.58 -32.39 13.55 -4.09 -0.06 -32.45 16 10 C -0.28 -14.13 5.92 -19.70 -0.12 -14.25 16 11 C -0.04 -1.71 9.53 22.50 0.21 -1.49 16 12 C -0.24 -9.48 10.03 22.40 0.22 -9.25 16 13 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 14 C -0.23 -11.58 7.86 22.72 0.18 -11.40 16 15 C 0.10 5.37 5.18 -21.11 -0.11 5.26 16 16 C -0.51 -30.00 7.66 23.41 0.18 -29.82 16 17 H 0.08 4.99 5.91 -2.91 -0.02 4.97 16 18 C 0.00 -0.14 5.04 85.37 0.43 0.29 16 19 N -0.82 -46.13 12.57 21.88 0.27 -45.86 16 20 Si 1.12 47.62 29.98 68.60 2.06 49.68 16 21 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 H 0.06 0.85 7.82 -2.39 -0.02 0.83 16 25 H 0.06 0.82 6.34 -2.39 -0.02 0.81 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.40 6.35 -2.38 -0.02 1.38 16 31 H 0.05 1.16 6.86 -2.39 -0.02 1.15 16 32 H 0.39 6.06 9.05 -74.06 -0.67 5.39 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.41 12.52 5.23 -92.71 -0.49 12.03 16 36 H 0.13 4.19 6.41 -2.91 -0.02 4.18 16 37 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.09 4.84 6.93 -2.91 -0.02 4.82 16 40 H 0.28 16.45 6.54 -92.71 -0.61 15.85 16 Total: -1.00 -70.02 324.37 1.87 -68.15 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.07 Total: 37.76 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 3.72 Total: -36.11 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.10 Total: -73.58 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -1.88 Total: -45.91 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.06 Total: 49.68 kcal Total: -70.02 1.87 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601260426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.573 kcal (2) G-P(sol) polarization free energy of solvation -70.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds